Wall clock time and date at job start Tue Mar 31 2020 19:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46608 * 2 1 4 4 H 1.08992 * 109.29837 * 305.41478 * 3 2 1 5 5 C 1.52976 * 109.29883 * 186.07545 * 3 2 1 6 6 C 1.53354 * 108.64828 * 188.97727 * 5 3 2 7 7 H 1.08996 * 109.67190 * 187.25058 * 6 5 3 8 8 C 1.50704 * 109.67116 * 307.74346 * 6 5 3 9 9 O 1.21275 * 119.99856 * 98.07705 * 8 6 5 10 10 N 1.34774 * 119.99822 * 278.07293 * 8 6 5 11 11 C 1.46926 * 120.62961 * 175.09635 * 10 8 6 12 12 C 1.53190 * 108.77684 * 126.41373 * 11 10 8 13 13 C 1.53042 * 109.31308 * 54.63560 * 12 11 10 14 14 N 1.46498 * 109.46276 * 178.62705 * 13 12 11 15 15 C 1.46500 * 119.99613 * 60.03168 * 14 13 12 16 16 C 1.36933 * 120.00200 * 240.02436 * 14 13 12 17 17 H 1.08005 * 120.00024 * 22.70113 * 16 14 13 18 18 C 1.38815 * 120.00507 * 202.69461 * 16 14 13 19 19 N 1.31618 * 119.99540 * 13.53868 * 18 16 14 20 20 Si 1.86789 * 120.00306 * 193.54200 * 18 16 14 21 21 H 1.48507 * 109.47255 * 59.99870 * 20 18 16 22 22 H 1.48503 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47305 * 299.99920 * 20 18 16 24 24 C 1.53046 * 109.52709 * 298.64455 * 13 12 11 25 25 C 1.46923 * 120.63506 * 355.12299 * 10 8 6 26 26 C 1.53071 * 108.45542 * 67.49340 * 6 5 3 27 27 C 1.50176 * 109.89284 * 311.08418 * 26 6 5 28 28 O 1.21281 * 118.24834 * 197.60684 * 27 26 6 29 29 N 1.33353 * 123.50770 * 17.57878 * 27 26 6 30 30 H 1.09002 * 109.47066 * 299.99387 * 1 2 3 31 31 H 1.08996 * 109.47354 * 59.99727 * 1 2 3 32 32 H 1.09002 * 109.46789 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47318 * 240.00716 * 2 1 3 34 34 H 1.09000 * 109.47381 * 119.99753 * 2 1 3 35 35 H 1.08997 * 109.66287 * 69.20316 * 5 3 2 36 36 H 1.08992 * 109.57288 * 308.69476 * 5 3 2 37 37 H 1.09006 * 109.58585 * 6.63026 * 11 10 8 38 38 H 1.09003 * 109.58914 * 246.20422 * 11 10 8 39 39 H 1.08996 * 109.49952 * 294.68847 * 12 11 10 40 40 H 1.09001 * 109.50226 * 174.58447 * 12 11 10 41 41 H 1.09007 * 109.45948 * 58.65379 * 13 12 11 42 42 H 1.08998 * 109.47231 * 95.11623 * 15 14 13 43 43 H 1.09007 * 109.46706 * 215.10867 * 15 14 13 44 44 H 1.08992 * 109.47365 * 335.11050 * 15 14 13 45 45 H 0.96996 * 120.00009 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.49416 * 181.30677 * 24 13 12 47 47 H 1.08995 * 109.49736 * 301.40459 * 24 13 12 48 48 H 1.09000 * 109.58408 * 353.36993 * 25 10 8 49 49 H 1.08995 * 109.59024 * 113.79565 * 25 10 8 50 50 H 1.08999 * 109.39944 * 71.21245 * 26 6 5 51 51 H 1.08993 * 109.39705 * 191.03863 * 26 6 5 52 52 H 0.97003 * 117.94875 * 177.78033 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5979 1.9809 -0.8384 5 6 3.5620 1.4408 -0.1528 6 6 4.0792 2.8666 0.0739 7 1 5.1436 2.9118 -0.1565 8 6 3.3272 3.8260 -0.8123 9 8 2.3962 4.4616 -0.3652 10 7 3.6894 3.9775 -2.1016 11 6 2.9016 4.8265 -3.0056 12 6 3.8355 5.8494 -3.6601 13 6 4.9947 5.1154 -4.3381 14 7 5.8722 6.0886 -4.9930 15 6 6.5290 7.1317 -4.2014 16 6 6.0787 6.0231 -6.3451 17 1 5.3561 5.5301 -6.9785 18 6 7.2167 6.5906 -6.9019 19 7 8.2181 6.9516 -6.1277 20 14 7.3268 6.8420 -8.7495 21 1 6.2265 7.7348 -9.1941 22 1 8.6335 7.4613 -9.0878 23 1 7.2078 5.5304 -9.4355 24 6 5.7907 4.3364 -3.2884 25 6 4.8792 3.2964 -2.6300 26 6 3.8535 3.2363 1.5420 27 6 2.4420 2.9123 1.9393 28 8 1.9960 3.4260 2.9434 29 7 1.6524 2.0906 1.2468 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8295 1.1100 -1.1563 36 1 4.0023 0.7705 0.5853 37 1 2.1299 5.3468 -2.4383 38 1 2.4386 4.2094 -3.7756 39 1 4.2275 6.5236 -2.8986 40 1 3.2828 6.4226 -4.4045 41 1 4.6006 4.4233 -5.0823 42 1 7.5321 6.8036 -3.9288 43 1 6.5936 8.0474 -4.7892 44 1 5.9502 7.3203 -3.2973 45 1 9.0134 7.3477 -6.5167 46 1 6.6297 3.8326 -3.7682 47 1 6.1643 5.0248 -2.5304 48 1 5.4123 2.8072 -1.8148 49 1 4.5775 2.5545 -3.3693 50 1 4.5445 2.6715 2.1679 51 1 4.0309 4.3030 1.6781 52 1 0.7646 1.9126 1.5947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985549794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:51 Heat of formation + Delta-G solvation = -79.481705 kcal Electronic energy + Delta-G solvation = -31244.780231 eV Core-core repulsion = 27243.401528 eV Total energy + Delta-G solvation = -4001.378703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.17285 -40.55814 -38.94461 -37.90819 -36.67357 -34.99216 -33.85896 -32.98862 -31.95043 -31.43337 -29.97857 -28.02195 -27.01738 -25.91816 -24.48253 -24.00603 -23.36015 -22.50495 -21.52764 -20.54303 -19.23689 -18.74806 -18.23850 -17.96400 -17.29726 -16.94872 -16.65170 -16.55332 -16.04951 -15.73748 -15.43336 -15.15414 -15.03480 -14.76230 -14.71675 -14.63926 -14.48724 -14.16369 -13.97273 -13.64781 -13.43094 -13.17002 -13.08027 -12.90781 -12.85791 -12.71661 -12.59059 -12.35242 -12.31887 -12.23079 -12.13761 -11.99290 -11.84327 -11.80376 -11.71510 -11.58044 -11.21615 -10.82591 -10.62494 -10.55614 -10.02067 -9.61046 -8.74194 -7.79266 -5.26886 1.47859 1.50832 1.56434 1.60722 1.72618 2.01957 2.40422 2.52890 3.33386 3.37679 3.54263 3.57601 3.65652 3.76651 3.78583 3.98386 4.13390 4.21126 4.21333 4.23554 4.33113 4.41652 4.46138 4.53010 4.60422 4.62229 4.71843 4.76670 4.78235 4.84414 4.86201 4.90451 4.93516 4.96514 5.04548 5.07705 5.14616 5.15727 5.25705 5.27650 5.41413 5.42767 5.53492 5.62503 5.69300 5.73954 5.86485 6.36029 6.43288 6.47537 7.18122 7.19349 7.26934 7.91699 8.36428 9.23470 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.002604 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.514145 B =10750.198185 C =11198.403606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.133 3.867 4 H 0.056 0.944 5 C -0.116 4.116 6 C -0.111 4.111 7 H 0.141 0.859 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.602 5.602 11 C 0.124 3.876 12 C -0.134 4.134 13 C 0.174 3.826 14 N -0.611 5.611 15 C 0.182 3.818 16 C -0.260 4.260 17 H 0.073 0.927 18 C -0.053 4.053 19 N -0.938 5.938 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.272 1.272 24 C -0.138 4.138 25 C 0.114 3.886 26 C -0.116 4.116 27 C 0.529 3.471 28 O -0.620 6.620 29 N -0.702 5.702 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.020 0.980 45 H 0.246 0.754 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.117 0.883 49 H 0.094 0.906 50 H 0.140 0.860 51 H 0.083 0.917 52 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -19.125 11.147 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C 0.029 3.971 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.131 4.131 7 H 0.158 0.842 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.334 5.334 11 C 0.001 3.999 12 C -0.174 4.174 13 C 0.067 3.933 14 N -0.333 5.333 15 C 0.037 3.963 16 C -0.390 4.390 17 H 0.090 0.910 18 C -0.248 4.248 19 N -0.585 5.585 20 Si 0.793 3.207 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.197 1.197 24 C -0.178 4.178 25 C -0.008 4.008 26 C -0.156 4.156 27 C 0.318 3.682 28 O -0.504 6.504 29 N -0.352 5.352 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.135 0.865 49 H 0.113 0.887 50 H 0.158 0.842 51 H 0.101 0.899 52 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.675 -18.417 11.695 23.865 hybrid contribution -0.065 1.224 -1.027 1.599 sum -9.741 -17.193 10.668 22.456 Atomic orbital electron populations 1.21826 0.95956 1.02563 1.01332 1.21879 0.96115 0.93703 1.04632 1.21211 0.96488 0.94316 0.85115 0.92568 1.22064 0.93018 0.93451 1.06870 1.21624 1.03313 0.95576 0.92637 0.84178 1.21076 0.83957 0.82726 0.82106 1.90725 1.32258 1.49026 1.74137 1.48208 1.28146 1.47563 1.09468 1.21458 0.93388 0.92525 0.92563 1.22281 0.97603 0.98316 0.99208 1.20523 0.89540 0.90033 0.93167 1.44163 1.53815 1.31109 1.04255 1.20392 0.93907 0.90430 0.91545 1.19529 1.02042 1.33572 0.83905 0.90960 1.25729 0.95144 1.02408 1.01538 1.70217 1.05785 1.47428 1.35074 0.85380 0.76140 0.78144 0.81002 1.21005 1.22459 1.19720 1.22317 0.98857 0.98317 0.98312 1.22026 0.84445 0.94073 1.00238 1.21544 0.93193 1.04333 0.96537 1.20383 0.89297 0.76718 0.81838 1.90698 1.76184 1.53782 1.29756 1.45539 1.17908 1.46697 1.25060 0.93670 0.92984 0.91095 0.88150 0.90245 0.86329 0.86729 0.90946 0.89678 0.93954 0.92028 0.91626 0.97585 0.97428 0.96130 0.94461 0.91645 0.93708 0.86488 0.88742 0.84210 0.89859 0.77024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.76 71.98 0.70 -0.83 16 2 C -0.13 -0.96 5.57 30.60 0.17 -0.79 16 3 C 0.13 1.71 2.40 45.12 0.11 1.82 16 4 H 0.06 0.97 7.31 -2.39 -0.02 0.95 16 5 C -0.12 -0.94 4.91 30.70 0.15 -0.79 16 6 C -0.11 -1.57 2.22 -11.40 -0.03 -1.59 16 7 H 0.14 1.23 6.25 -2.39 -0.01 1.22 16 8 C 0.51 11.87 5.43 87.66 0.48 12.35 16 9 O -0.58 -18.95 14.17 -3.01 -0.04 -18.99 16 10 N -0.60 -13.28 2.97 -818.97 -2.43 -15.72 16 11 C 0.12 3.20 6.44 86.36 0.56 3.76 16 12 C -0.13 -4.32 5.32 30.67 0.16 -4.16 16 13 C 0.17 6.20 2.55 45.02 0.11 6.32 16 14 N -0.61 -29.01 2.81 -702.61 -1.97 -30.98 16 15 C 0.18 8.95 8.04 127.77 1.03 9.98 16 16 C -0.26 -13.68 9.59 84.03 0.81 -12.88 16 17 H 0.07 3.64 7.82 -2.91 -0.02 3.62 16 18 C -0.05 -2.90 5.09 84.86 0.43 -2.47 16 19 N -0.94 -54.47 10.72 21.65 0.23 -54.24 16 20 Si 0.96 43.98 29.57 68.60 2.03 46.01 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C -0.14 -4.00 5.34 30.66 0.16 -3.84 16 25 C 0.11 2.03 6.02 86.35 0.52 2.55 16 26 C -0.12 -2.18 5.19 29.71 0.15 -2.03 16 27 C 0.53 13.62 6.40 87.71 0.56 14.18 16 28 O -0.62 -22.24 17.78 -3.03 -0.05 -22.30 16 29 N -0.70 -13.80 4.96 -446.55 -2.21 -16.02 16 30 H 0.04 0.51 6.67 -2.39 -0.02 0.49 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.12 0.44 7.87 -2.39 -0.02 0.42 16 36 H 0.11 0.43 8.11 -2.39 -0.02 0.41 16 37 H 0.07 2.11 7.00 -2.38 -0.02 2.09 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.51 6.72 -2.39 -0.02 1.50 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 2.30 7.86 -2.38 -0.02 2.28 16 42 H 0.01 0.32 7.35 -2.39 -0.02 0.30 16 43 H 0.01 0.38 7.33 -2.38 -0.02 0.36 16 44 H 0.02 0.89 6.46 -2.39 -0.02 0.87 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 1.44 7.72 -2.39 -0.02 1.42 16 48 H 0.12 1.26 5.44 -2.39 -0.01 1.24 16 49 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 52 H 0.39 7.81 7.04 -92.71 -0.65 7.16 16 Total: -1.00 -78.33 391.20 1.88 -76.44 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.26 Total: 14.21 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 6.08 Total: 21.58 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -6.39 Total: -116.96 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -78.33 1.88 -76.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.037 kcal (2) G-P(sol) polarization free energy of solvation -78.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds