Wall clock time and date at job start Tue Mar 31 2020 19:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46738 * 2 1 4 4 H 1.08997 * 109.30379 * 54.58050 * 3 2 1 5 5 C 1.52910 * 109.14012 * 174.05310 * 3 2 1 6 6 C 1.53346 * 108.68705 * 170.93830 * 5 3 2 7 7 H 1.08999 * 109.70597 * 52.23135 * 6 5 3 8 8 C 1.50695 * 109.67539 * 172.74497 * 6 5 3 9 9 O 1.21282 * 120.00175 * 97.12680 * 8 6 5 10 10 N 1.34773 * 120.00364 * 277.13222 * 8 6 5 11 11 C 1.46926 * 120.63391 * 175.20869 * 10 8 6 12 12 C 1.53188 * 108.77653 * 233.62853 * 11 10 8 13 13 C 1.53042 * 109.31461 * 305.36556 * 12 11 10 14 14 N 1.46500 * 109.46077 * 181.38462 * 13 12 11 15 15 C 1.46494 * 120.00094 * 300.00629 * 14 13 12 16 16 C 1.36938 * 120.00085 * 119.99703 * 14 13 12 17 17 H 1.07998 * 119.99822 * 337.74544 * 16 14 13 18 18 C 1.38806 * 120.00139 * 157.73784 * 16 14 13 19 19 N 1.31618 * 119.99962 * 348.05679 * 18 16 14 20 20 Si 1.86803 * 120.00060 * 168.05711 * 18 16 14 21 21 H 1.48507 * 109.46841 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47296 * 300.00161 * 20 18 16 23 23 H 1.48501 * 109.46973 * 60.00595 * 20 18 16 24 24 C 1.53041 * 109.53578 * 61.36488 * 13 12 11 25 25 C 1.46931 * 120.62788 * 355.23508 * 10 8 6 26 26 C 1.53073 * 108.42555 * 292.47859 * 6 5 3 27 27 C 1.50179 * 109.88719 * 48.90020 * 26 6 5 28 28 O 1.21286 * 118.23930 * 162.44143 * 27 26 6 29 29 N 1.33348 * 123.51253 * 342.41999 * 27 26 6 30 30 H 1.08999 * 109.47365 * 60.00404 * 1 2 3 31 31 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47646 * 300.00189 * 1 2 3 33 33 H 1.08995 * 109.47296 * 239.99771 * 2 1 3 34 34 H 1.08999 * 109.46878 * 119.99386 * 2 1 3 35 35 H 1.09002 * 109.58856 * 51.18117 * 5 3 2 36 36 H 1.08999 * 109.60292 * 290.70028 * 5 3 2 37 37 H 1.09005 * 109.58160 * 113.83997 * 11 10 8 38 38 H 1.08996 * 109.70483 * 353.49405 * 11 10 8 39 39 H 1.09001 * 109.49604 * 185.41654 * 12 11 10 40 40 H 1.08997 * 109.49802 * 65.31963 * 12 11 10 41 41 H 1.09001 * 109.45871 * 301.35639 * 13 12 11 42 42 H 1.09004 * 109.46563 * 269.26141 * 15 14 13 43 43 H 1.08999 * 109.47444 * 29.26099 * 15 14 13 44 44 H 1.08998 * 109.47601 * 149.26386 * 15 14 13 45 45 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49902 * 58.58742 * 24 13 12 47 47 H 1.09007 * 109.49442 * 178.68469 * 24 13 12 48 48 H 1.09004 * 109.58306 * 246.16162 * 25 10 8 49 49 H 1.08995 * 109.58665 * 6.58093 * 25 10 8 50 50 H 1.08996 * 109.40074 * 169.02970 * 26 6 5 51 51 H 1.08996 * 109.39927 * 288.86411 * 26 6 5 52 52 H 0.97001 * 117.94777 * 182.22989 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5979 1.9809 0.8383 5 6 3.5616 1.4364 0.1497 6 6 4.0835 2.8601 -0.0785 7 1 3.5434 3.5567 0.5626 8 6 5.5559 2.9175 0.2373 9 8 6.3716 2.8274 -0.6556 10 7 5.9663 3.0688 1.5121 11 6 7.3956 3.0217 1.8490 12 6 7.6081 1.9803 2.9522 13 6 6.6936 2.3033 4.1361 14 7 6.9181 1.3285 5.2064 15 6 6.6873 -0.0968 4.9592 16 6 7.3438 1.7497 6.4379 17 1 7.8506 2.6981 6.5388 18 6 7.1239 0.9578 7.5565 19 7 6.3100 -0.0739 7.4827 20 14 7.9830 1.3565 9.1667 21 1 7.5832 0.3669 10.1992 22 1 9.4538 1.2995 8.9703 23 1 7.5952 2.7196 9.6103 24 6 5.2322 2.2392 3.6863 25 6 4.9928 3.2835 2.5914 26 6 3.8566 3.2291 -1.5467 27 6 2.4434 2.9091 -1.9413 28 8 1.9978 3.4225 -2.9458 29 7 1.6524 2.0905 -1.2468 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.9987 0.7639 -0.5885 36 1 3.8291 1.1053 1.1531 37 1 7.7200 4.0004 2.2028 38 1 7.9721 2.7426 0.9671 39 1 8.6478 2.0033 3.2788 40 1 7.3689 0.9889 2.5676 41 1 6.9164 3.3048 4.5044 42 1 5.6569 -0.3471 5.2117 43 1 6.8673 -0.3170 3.9070 44 1 7.3659 -0.6870 5.5751 45 1 6.1566 -0.6276 8.2643 46 1 5.0153 1.2453 3.2948 47 1 4.5808 2.4464 4.5354 48 1 5.1212 4.2835 3.0058 49 1 3.9818 3.1757 2.1985 50 1 4.0386 4.2949 -1.6845 51 1 4.5437 2.6604 -2.1732 52 1 0.7635 1.9149 -1.5933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985549800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:54 Heat of formation + Delta-G solvation = -81.061445 kcal Electronic energy + Delta-G solvation = -31040.305378 eV Core-core repulsion = 27038.858172 eV Total energy + Delta-G solvation = -4001.447206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01002 -40.79094 -38.98876 -38.09573 -36.68564 -34.98527 -33.85158 -33.06985 -31.93951 -31.41285 -30.02442 -27.98846 -27.17109 -25.89379 -24.46909 -23.97254 -23.43915 -22.58094 -21.13023 -20.33002 -19.54400 -18.72524 -18.35930 -18.19817 -17.37365 -16.94089 -16.80837 -16.29705 -16.16782 -15.70903 -15.37611 -15.32161 -14.98722 -14.93717 -14.77193 -14.64027 -14.38194 -14.25427 -14.00564 -13.71014 -13.64214 -13.13641 -13.09743 -12.94626 -12.76090 -12.60888 -12.41171 -12.33470 -12.30148 -12.19594 -12.09690 -11.98503 -11.88218 -11.79158 -11.76850 -11.54069 -11.22478 -11.12808 -10.60558 -10.54831 -10.10437 -9.64247 -8.71457 -7.78922 -5.24052 1.49038 1.50199 1.51404 1.56840 1.59467 1.96958 2.27692 2.53877 3.26080 3.35859 3.53804 3.55184 3.64637 3.67227 3.85755 3.99114 4.06267 4.18361 4.19612 4.23114 4.26347 4.39520 4.43920 4.48244 4.58921 4.61782 4.67530 4.75859 4.81061 4.81505 4.85552 4.88640 4.92076 4.97359 5.07052 5.10625 5.15870 5.20413 5.27708 5.31418 5.43848 5.44598 5.55635 5.63270 5.71373 5.77782 5.81479 6.29729 6.38032 6.43514 7.12503 7.16416 7.21015 7.94683 8.37752 9.24679 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.002877 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.700206 B = 9731.636783 C =10954.861879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.145 3.855 4 H 0.104 0.896 5 C -0.121 4.121 6 C -0.102 4.102 7 H 0.128 0.872 8 C 0.522 3.478 9 O -0.581 6.581 10 N -0.602 5.602 11 C 0.122 3.878 12 C -0.132 4.132 13 C 0.172 3.828 14 N -0.611 5.611 15 C 0.184 3.816 16 C -0.259 4.259 17 H 0.070 0.930 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.298 1.298 22 H -0.283 1.283 23 H -0.275 1.275 24 C -0.134 4.134 25 C 0.112 3.888 26 C -0.114 4.114 27 C 0.527 3.473 28 O -0.604 6.604 29 N -0.702 5.702 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.001 0.999 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.246 0.754 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.102 0.898 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 3.772 -13.473 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.041 3.959 4 H 0.122 0.878 5 C -0.159 4.159 6 C -0.124 4.124 7 H 0.146 0.854 8 C 0.311 3.689 9 O -0.461 6.461 10 N -0.334 5.334 11 C -0.001 4.001 12 C -0.173 4.173 13 C 0.065 3.935 14 N -0.333 5.333 15 C 0.039 3.961 16 C -0.389 4.389 17 H 0.088 0.912 18 C -0.246 4.246 19 N -0.584 5.584 20 Si 0.791 3.209 21 H -0.224 1.224 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.174 4.174 25 C -0.010 4.010 26 C -0.154 4.154 27 C 0.315 3.685 28 O -0.487 6.487 29 N -0.354 5.354 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.019 0.981 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.131 0.869 50 H 0.122 0.878 51 H 0.120 0.880 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.977 3.903 -14.181 17.773 hybrid contribution 0.388 -0.417 1.108 1.246 sum -9.589 3.486 -13.073 16.583 Atomic orbital electron populations 1.21812 0.94658 1.02615 1.02245 1.21909 0.97064 0.94513 1.03787 1.21183 0.93988 0.94648 0.86096 0.87842 1.21947 0.94837 0.94157 1.04935 1.21448 0.92371 1.00912 0.97621 0.85378 1.20750 0.91351 0.75025 0.81775 1.90676 1.56671 1.52116 1.46607 1.48201 1.07893 1.70289 1.06977 1.21504 0.81292 0.99456 0.97854 1.22267 1.00519 0.98641 0.95825 1.20521 0.93169 0.92531 0.87258 1.44151 1.78251 1.02185 1.08746 1.20392 0.97521 0.84183 0.93971 1.19519 1.29519 1.04778 0.85123 0.91232 1.25662 0.99427 0.99036 1.00481 1.70205 1.38490 1.20304 1.29413 0.85419 0.78321 0.77234 0.79908 1.22396 1.20965 1.20078 1.22287 0.98116 0.99119 0.97842 1.22001 0.93014 0.99388 0.86629 1.21447 0.92738 1.04914 0.96290 1.20190 0.88240 0.77716 0.82384 1.90748 1.75510 1.53956 1.28476 1.45687 1.18125 1.46336 1.25260 0.92682 0.91992 0.91595 0.91625 0.89270 0.90806 0.88004 0.90294 0.90223 0.91875 0.93045 0.92236 0.98110 0.96056 0.96613 0.94466 0.92536 0.91789 0.89720 0.86852 0.87817 0.88025 0.75913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.76 71.98 0.70 -0.59 16 2 C -0.13 -1.27 5.56 30.59 0.17 -1.10 16 3 C 0.14 1.49 3.08 45.10 0.14 1.63 16 4 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 5 C -0.12 -1.62 4.37 30.68 0.13 -1.48 16 6 C -0.10 -1.62 1.72 -11.40 -0.02 -1.64 16 7 H 0.13 1.41 6.42 -2.39 -0.02 1.39 16 8 C 0.52 11.97 6.85 87.66 0.60 12.57 16 9 O -0.58 -17.80 15.26 -3.04 -0.05 -17.85 16 10 N -0.60 -13.34 2.97 -818.93 -2.43 -15.77 16 11 C 0.12 3.07 6.41 86.36 0.55 3.62 16 12 C -0.13 -4.02 5.31 30.67 0.16 -3.85 16 13 C 0.17 5.93 2.55 45.02 0.12 6.05 16 14 N -0.61 -28.02 2.81 -702.64 -1.98 -29.99 16 15 C 0.18 8.58 8.06 127.77 1.03 9.61 16 16 C -0.26 -13.39 9.60 84.03 0.81 -12.58 16 17 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 18 C -0.05 -2.74 5.09 84.86 0.43 -2.30 16 19 N -0.94 -53.08 10.63 21.65 0.23 -52.85 16 20 Si 0.96 43.45 29.57 68.60 2.03 45.48 16 21 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 C -0.13 -3.68 5.34 30.67 0.16 -3.51 16 25 C 0.11 2.08 6.10 86.36 0.53 2.61 16 26 C -0.11 -2.19 5.07 29.71 0.15 -2.04 16 27 C 0.53 11.03 7.71 87.72 0.68 11.71 16 28 O -0.60 -18.03 17.78 -3.05 -0.05 -18.09 16 29 N -0.70 -10.04 5.12 -446.65 -2.29 -12.33 16 30 H 0.05 0.43 6.67 -2.39 -0.02 0.41 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.10 1.33 7.79 -2.39 -0.02 1.31 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.08 2.16 7.04 -2.39 -0.02 2.14 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.66 6.72 -2.39 -0.02 1.64 16 41 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 42 H 0.00 0.03 7.62 -2.38 -0.02 0.01 16 43 H 0.02 0.86 6.45 -2.39 -0.02 0.84 16 44 H 0.02 0.80 6.96 -2.39 -0.02 0.78 16 45 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 46 H 0.06 1.61 7.72 -2.39 -0.02 1.59 16 47 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.11 1.37 5.21 -2.39 -0.01 1.36 16 50 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.10 2.28 7.46 -2.39 -0.02 2.26 16 52 H 0.40 5.28 7.04 -92.71 -0.65 4.63 16 Total: -1.00 -70.51 394.68 2.07 -68.45 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.26 Total: 14.26 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.34 Total: 18.69 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -6.47 Total: -110.95 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.10 Total: -35.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -70.51 2.07 -68.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.615 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds