Wall clock time and date at job start Tue Mar 31 2020 20:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 H 1.09004 * 109.12558 * 55.51549 * 3 2 1 5 5 C 1.52913 * 109.29884 * 174.99665 * 3 2 1 6 6 C 1.53348 * 108.67628 * 171.06568 * 5 3 2 7 7 H 1.08995 * 109.67762 * 172.70464 * 6 5 3 8 8 C 1.50699 * 109.67367 * 52.19851 * 6 5 3 9 9 O 1.21275 * 120.00629 * 262.92888 * 8 6 5 10 10 N 1.34780 * 119.99599 * 82.92418 * 8 6 5 11 11 C 1.46924 * 120.63008 * 175.07346 * 10 8 6 12 12 C 1.53189 * 108.77983 * 233.58845 * 11 10 8 13 13 C 1.53038 * 109.31443 * 305.37165 * 12 11 10 14 14 N 1.46495 * 109.46189 * 181.38380 * 13 12 11 15 15 C 1.46508 * 120.00043 * 299.99582 * 14 13 12 16 16 C 1.36939 * 120.00372 * 120.00088 * 14 13 12 17 17 H 1.08004 * 119.99298 * 339.86913 * 16 14 13 18 18 C 1.38812 * 120.00343 * 160.15295 * 16 14 13 19 19 N 1.31618 * 119.99704 * 343.85880 * 18 16 14 20 20 Si 1.86794 * 119.99958 * 163.85744 * 18 16 14 21 21 H 1.48506 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47222 * 119.99905 * 20 18 16 23 23 H 1.48506 * 109.47078 * 240.00037 * 20 18 16 24 24 C 1.53042 * 109.54066 * 61.35811 * 13 12 11 25 25 C 1.46933 * 120.62922 * 355.05944 * 10 8 6 26 26 C 1.53071 * 108.42157 * 292.47162 * 6 5 3 27 27 C 1.50176 * 109.88982 * 48.91617 * 26 6 5 28 28 O 1.21282 * 118.25007 * 162.42644 * 27 26 6 29 29 N 1.33354 * 123.50531 * 342.37535 * 27 26 6 30 30 H 1.08992 * 109.47426 * 299.99839 * 1 2 3 31 31 H 1.09004 * 109.47177 * 60.00535 * 1 2 3 32 32 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47426 * 240.00161 * 2 1 3 34 34 H 1.08995 * 109.46996 * 119.99253 * 2 1 3 35 35 H 1.09007 * 109.60409 * 51.31222 * 5 3 2 36 36 H 1.09000 * 109.60545 * 290.82045 * 5 3 2 37 37 H 1.09007 * 109.58391 * 113.80054 * 11 10 8 38 38 H 1.09000 * 109.59008 * 353.38335 * 11 10 8 39 39 H 1.08997 * 109.50110 * 185.41714 * 12 11 10 40 40 H 1.09003 * 109.49534 * 65.31452 * 12 11 10 41 41 H 1.09003 * 109.46079 * 301.35298 * 13 12 11 42 42 H 1.08999 * 109.46931 * 264.87973 * 15 14 13 43 43 H 1.08997 * 109.46459 * 24.87931 * 15 14 13 44 44 H 1.08997 * 109.47112 * 144.87599 * 15 14 13 45 45 H 0.96998 * 119.99624 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.49556 * 58.58972 * 24 13 12 47 47 H 1.09005 * 109.49907 * 178.68605 * 24 13 12 48 48 H 1.09003 * 109.58068 * 246.19537 * 25 10 8 49 49 H 1.08999 * 109.58717 * 6.62366 * 25 10 8 50 50 H 1.09002 * 109.40210 * 169.02675 * 26 6 5 51 51 H 1.08999 * 109.40354 * 288.76630 * 26 6 5 52 52 H 0.97002 * 117.94827 * 182.24299 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6092 1.9736 0.8489 5 6 3.5639 1.4399 0.1259 6 6 4.0777 2.8670 -0.0998 7 1 5.1458 2.9104 0.1129 8 6 3.3409 3.8206 0.8050 9 8 2.3914 4.4460 0.3829 10 7 3.7372 3.9784 2.0836 11 6 3.0988 4.9815 2.9467 12 6 4.1853 5.8806 3.5448 13 6 5.2270 5.0124 4.2542 14 7 6.2502 5.8711 4.8557 15 6 7.0486 6.7620 4.0099 16 6 6.4605 5.8411 6.2085 17 1 5.6943 5.4568 6.8656 18 6 7.6559 6.3101 6.7357 19 7 8.6980 6.4838 5.9508 20 14 7.7854 6.6947 8.5590 21 1 6.4833 6.4175 9.2172 22 1 8.8399 5.8465 9.1702 23 1 8.1355 8.1266 8.7392 24 6 5.8828 4.0701 3.2422 25 6 4.8155 3.1503 2.6407 26 6 3.8269 3.2459 -1.5615 27 6 2.4086 2.9247 -1.9364 28 8 1.9457 3.4442 -2.9298 29 7 1.6312 2.0980 -1.2360 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.9916 0.7744 -0.6240 36 1 3.8479 1.1024 1.1226 37 1 2.5562 4.4811 3.7488 38 1 2.4087 5.5850 2.3571 39 1 3.7354 6.5676 4.2615 40 1 4.6666 6.4485 2.7485 41 1 4.7408 4.4261 5.0339 42 1 7.9867 6.2718 3.7498 43 1 6.4944 6.9921 3.1000 44 1 7.2585 7.6848 4.5507 45 1 9.5334 6.8111 6.3193 46 1 6.3480 4.6550 2.4488 47 1 6.6409 3.4683 3.7435 48 1 4.4128 2.5007 3.4179 49 1 5.2581 2.5457 1.8492 50 1 4.0033 4.3134 -1.6943 51 1 4.5071 2.6854 -2.2028 52 1 0.7376 1.9221 -1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985549809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:02 Heat of formation + Delta-G solvation = -56.739787 kcal Electronic energy + Delta-G solvation = -31258.266451 eV Core-core repulsion = 27257.873911 eV Total energy + Delta-G solvation = -4000.392540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.29841 -39.50088 -37.65385 -37.04247 -35.13250 -34.23487 -32.40392 -32.04697 -30.80212 -29.78537 -29.33083 -26.08199 -25.96412 -24.83388 -23.51449 -22.82172 -22.08195 -21.81430 -20.48215 -19.34827 -18.24511 -17.42523 -16.99956 -16.76878 -16.45743 -15.72625 -15.61437 -15.21152 -15.02092 -14.61285 -14.12765 -14.07965 -13.99245 -13.85121 -13.72318 -13.50844 -13.37613 -12.95174 -12.86589 -12.36616 -12.30767 -12.25333 -12.10526 -11.74809 -11.64634 -11.60878 -11.50709 -11.31988 -11.13861 -11.02333 -10.89717 -10.81412 -10.43383 -10.24843 -10.20791 -9.88836 -9.82808 -9.71658 -9.56400 -9.16281 -8.61056 -8.50741 -6.82716 -5.76547 -3.19523 2.55868 2.68777 2.98615 3.19477 3.34593 3.42658 3.44030 4.10036 4.19922 4.23269 4.43840 4.45831 4.56130 4.70751 4.78185 4.90331 5.02548 5.06956 5.18687 5.21953 5.27095 5.29027 5.33963 5.36154 5.42082 5.46931 5.51536 5.54386 5.59872 5.63375 5.67663 5.74283 5.84037 5.85949 5.96437 6.10447 6.19543 6.33011 6.44134 6.56201 6.69633 6.74434 6.91295 6.93031 7.28310 7.35895 7.45020 7.67877 7.77324 8.16507 8.20079 8.34479 9.19335 9.84033 10.32051 11.28379 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002604 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.898370 B =10751.328888 C =11168.821753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.139 3.861 4 H 0.075 0.925 5 C -0.122 4.122 6 C -0.117 4.117 7 H 0.111 0.889 8 C 0.515 3.485 9 O -0.538 6.538 10 N -0.603 5.603 11 C 0.116 3.884 12 C -0.147 4.147 13 C 0.181 3.819 14 N -0.596 5.596 15 C 0.163 3.837 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.906 5.906 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C -0.147 4.147 25 C 0.105 3.895 26 C -0.117 4.117 27 C 0.539 3.461 28 O -0.564 6.564 29 N -0.708 5.708 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.028 0.972 43 H -0.001 1.001 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 -14.641 -11.293 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.034 3.966 4 H 0.093 0.907 5 C -0.160 4.160 6 C -0.139 4.139 7 H 0.129 0.871 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.187 4.187 13 C 0.072 3.928 14 N -0.318 5.318 15 C 0.018 3.982 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.198 4.198 19 N -0.551 5.551 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.188 4.188 25 C -0.018 4.018 26 C -0.157 4.157 27 C 0.327 3.673 28 O -0.443 6.443 29 N -0.361 5.361 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.017 0.983 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.123 0.877 51 H 0.124 0.876 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.940 -13.892 -11.862 21.292 hybrid contribution 0.122 0.196 1.134 1.157 sum -10.817 -13.696 -10.728 20.486 Atomic orbital electron populations 1.21798 0.95338 1.02119 1.02108 1.21921 0.96696 0.95380 1.03272 1.20984 0.94792 0.93341 0.87532 0.90695 1.21954 0.94587 0.95029 1.04439 1.21533 1.02326 0.95239 0.94790 0.87105 1.20366 0.84271 0.82972 0.82121 1.90728 1.28052 1.48172 1.74564 1.48164 1.36786 1.37585 1.11007 1.21645 0.95687 0.90193 0.93154 1.22481 0.96986 0.98811 1.00407 1.20258 0.89387 0.90300 0.92864 1.43986 1.40219 1.43393 1.04163 1.20742 0.92907 0.93950 0.90554 1.19258 0.98407 1.38614 0.82080 0.91336 1.24934 0.95052 1.02129 0.97650 1.70101 1.00972 1.50011 1.34010 0.86231 0.77478 0.77836 0.85260 1.20368 1.21824 1.21667 1.22538 0.97556 0.98670 1.00013 1.21948 0.88131 0.93395 0.98323 1.21502 0.94227 1.05078 0.94888 1.19795 0.88216 0.77151 0.82186 1.90733 1.74339 1.51399 1.27823 1.45440 1.17937 1.47265 1.25469 0.92259 0.92733 0.92169 0.91084 0.90219 0.89438 0.88955 0.91792 0.89702 0.90844 0.92040 0.91950 0.95365 0.98280 0.94084 0.93844 0.92108 0.90487 0.91242 0.90297 0.87659 0.87579 0.76774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.75 37.16 0.36 -0.54 16 2 C -0.13 -0.76 5.58 -26.73 -0.15 -0.91 16 3 C 0.14 1.10 2.39 -68.37 -0.16 0.94 16 4 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 5 C -0.12 -0.81 4.74 -26.60 -0.13 -0.94 16 6 C -0.12 -1.07 2.18 -91.56 -0.20 -1.27 16 7 H 0.11 0.83 6.65 -51.93 -0.35 0.49 16 8 C 0.52 6.55 5.46 -10.98 -0.06 6.49 16 9 O -0.54 -8.80 14.13 5.56 0.08 -8.72 16 10 N -0.60 -7.50 2.97 -172.76 -0.51 -8.02 16 11 C 0.12 1.59 6.42 -3.71 -0.02 1.57 16 12 C -0.15 -2.38 5.32 -26.61 -0.14 -2.53 16 13 C 0.18 3.29 2.55 -67.89 -0.17 3.12 16 14 N -0.60 -14.00 2.81 -173.43 -0.49 -14.48 16 15 C 0.16 3.87 8.04 59.85 0.48 4.35 16 16 C -0.25 -6.66 9.61 -15.06 -0.14 -6.81 16 17 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 18 C 0.00 0.01 5.04 -17.43 -0.09 -0.07 16 19 N -0.91 -25.65 10.71 55.49 0.59 -25.06 16 20 Si 0.90 21.27 29.58 -169.99 -5.03 16.24 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.15 -2.26 5.34 -26.61 -0.14 -2.40 16 25 C 0.11 1.16 5.83 -3.71 -0.02 1.13 16 26 C -0.12 -1.22 5.20 -28.10 -0.15 -1.36 16 27 C 0.54 7.09 6.39 -11.87 -0.08 7.02 16 28 O -0.56 -9.80 17.78 5.56 0.10 -9.70 16 29 N -0.71 -7.37 4.94 -54.85 -0.27 -7.65 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.33 6.63 -51.93 -0.34 -0.01 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.45 8.11 -51.92 -0.42 0.03 16 36 H 0.09 0.49 7.12 -51.93 -0.37 0.12 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.08 1.25 7.04 -51.93 -0.37 0.89 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 41 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 42 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 43 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 44 H 0.04 1.07 7.21 -51.93 -0.37 0.69 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.06 1.00 7.72 -51.93 -0.40 0.59 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.66 4.95 -51.93 -0.26 0.40 16 50 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 51 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.40 3.96 6.98 -40.82 -0.28 3.67 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -33.64 389.72 -9.26 -42.90 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.79 Total: 0.82 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.81 Total: 7.79 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.68 Total: -55.20 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.64 -9.26 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.841 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds