Wall clock time and date at job start Tue Mar 31 2020 20:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 H 1.09004 * 109.12558 * 55.51549 * 3 2 1 5 5 C 1.52913 * 109.29884 * 174.99665 * 3 2 1 6 6 C 1.53348 * 108.67628 * 171.06568 * 5 3 2 7 7 H 1.08995 * 109.67762 * 172.70464 * 6 5 3 8 8 C 1.50699 * 109.67367 * 52.19851 * 6 5 3 9 9 O 1.21275 * 120.00629 * 262.92888 * 8 6 5 10 10 N 1.34780 * 119.99599 * 82.92418 * 8 6 5 11 11 C 1.46924 * 120.63008 * 175.07346 * 10 8 6 12 12 C 1.53189 * 108.77983 * 233.58845 * 11 10 8 13 13 C 1.53038 * 109.31443 * 305.37165 * 12 11 10 14 14 N 1.46495 * 109.46189 * 181.38380 * 13 12 11 15 15 C 1.46508 * 120.00043 * 299.99582 * 14 13 12 16 16 C 1.36939 * 120.00372 * 120.00088 * 14 13 12 17 17 H 1.08004 * 119.99298 * 339.86913 * 16 14 13 18 18 C 1.38812 * 120.00343 * 160.15295 * 16 14 13 19 19 N 1.31618 * 119.99704 * 343.85880 * 18 16 14 20 20 Si 1.86794 * 119.99958 * 163.85744 * 18 16 14 21 21 H 1.48506 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47222 * 119.99905 * 20 18 16 23 23 H 1.48506 * 109.47078 * 240.00037 * 20 18 16 24 24 C 1.53042 * 109.54066 * 61.35811 * 13 12 11 25 25 C 1.46933 * 120.62922 * 355.05944 * 10 8 6 26 26 C 1.53071 * 108.42157 * 292.47162 * 6 5 3 27 27 C 1.50176 * 109.88982 * 48.91617 * 26 6 5 28 28 O 1.21282 * 118.25007 * 162.42644 * 27 26 6 29 29 N 1.33354 * 123.50531 * 342.37535 * 27 26 6 30 30 H 1.08992 * 109.47426 * 299.99839 * 1 2 3 31 31 H 1.09004 * 109.47177 * 60.00535 * 1 2 3 32 32 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47426 * 240.00161 * 2 1 3 34 34 H 1.08995 * 109.46996 * 119.99253 * 2 1 3 35 35 H 1.09007 * 109.60409 * 51.31222 * 5 3 2 36 36 H 1.09000 * 109.60545 * 290.82045 * 5 3 2 37 37 H 1.09007 * 109.58391 * 113.80054 * 11 10 8 38 38 H 1.09000 * 109.59008 * 353.38335 * 11 10 8 39 39 H 1.08997 * 109.50110 * 185.41714 * 12 11 10 40 40 H 1.09003 * 109.49534 * 65.31452 * 12 11 10 41 41 H 1.09003 * 109.46079 * 301.35298 * 13 12 11 42 42 H 1.08999 * 109.46931 * 264.87973 * 15 14 13 43 43 H 1.08997 * 109.46459 * 24.87931 * 15 14 13 44 44 H 1.08997 * 109.47112 * 144.87599 * 15 14 13 45 45 H 0.96998 * 119.99624 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.49556 * 58.58972 * 24 13 12 47 47 H 1.09005 * 109.49907 * 178.68605 * 24 13 12 48 48 H 1.09003 * 109.58068 * 246.19537 * 25 10 8 49 49 H 1.08999 * 109.58717 * 6.62366 * 25 10 8 50 50 H 1.09002 * 109.40210 * 169.02675 * 26 6 5 51 51 H 1.08999 * 109.40354 * 288.76630 * 26 6 5 52 52 H 0.97002 * 117.94827 * 182.24299 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6092 1.9736 0.8489 5 6 3.5639 1.4399 0.1259 6 6 4.0777 2.8670 -0.0998 7 1 5.1458 2.9104 0.1129 8 6 3.3409 3.8206 0.8050 9 8 2.3914 4.4460 0.3829 10 7 3.7372 3.9784 2.0836 11 6 3.0988 4.9815 2.9467 12 6 4.1853 5.8806 3.5448 13 6 5.2270 5.0124 4.2542 14 7 6.2502 5.8711 4.8557 15 6 7.0486 6.7620 4.0099 16 6 6.4605 5.8411 6.2085 17 1 5.6943 5.4568 6.8656 18 6 7.6559 6.3101 6.7357 19 7 8.6980 6.4838 5.9508 20 14 7.7854 6.6947 8.5590 21 1 6.4833 6.4175 9.2172 22 1 8.8399 5.8465 9.1702 23 1 8.1355 8.1266 8.7392 24 6 5.8828 4.0701 3.2422 25 6 4.8155 3.1503 2.6407 26 6 3.8269 3.2459 -1.5615 27 6 2.4086 2.9247 -1.9364 28 8 1.9457 3.4442 -2.9298 29 7 1.6312 2.0980 -1.2360 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.9916 0.7744 -0.6240 36 1 3.8479 1.1024 1.1226 37 1 2.5562 4.4811 3.7488 38 1 2.4087 5.5850 2.3571 39 1 3.7354 6.5676 4.2615 40 1 4.6666 6.4485 2.7485 41 1 4.7408 4.4261 5.0339 42 1 7.9867 6.2718 3.7498 43 1 6.4944 6.9921 3.1000 44 1 7.2585 7.6848 4.5507 45 1 9.5334 6.8111 6.3193 46 1 6.3480 4.6550 2.4488 47 1 6.6409 3.4683 3.7435 48 1 4.4128 2.5007 3.4179 49 1 5.2581 2.5457 1.8492 50 1 4.0033 4.3134 -1.6943 51 1 4.5071 2.6854 -2.2028 52 1 0.7376 1.9221 -1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985549809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:01 Heat of formation + Delta-G solvation = -79.242218 kcal Electronic energy + Delta-G solvation = -31259.242229 eV Core-core repulsion = 27257.873911 eV Total energy + Delta-G solvation = -4001.368318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.18472 -40.55788 -38.94930 -37.91597 -36.68265 -35.00031 -33.86012 -32.98683 -31.94585 -31.42068 -29.98694 -28.02392 -27.02613 -25.93317 -24.46443 -24.01890 -23.34279 -22.50924 -21.52666 -20.52635 -19.29031 -18.74954 -18.24514 -17.93721 -17.29878 -16.95141 -16.65027 -16.52302 -16.08516 -15.72632 -15.45201 -15.18377 -15.02619 -14.76368 -14.72577 -14.61891 -14.49079 -14.14323 -13.95494 -13.64516 -13.44927 -13.16356 -13.08022 -12.93716 -12.86061 -12.74677 -12.61825 -12.34311 -12.31850 -12.20283 -12.08509 -11.99226 -11.84011 -11.79371 -11.72171 -11.58613 -11.21355 -10.82331 -10.63461 -10.56896 -10.01936 -9.61516 -8.77096 -7.79994 -5.23879 1.46661 1.49847 1.58537 1.59997 1.72504 2.01955 2.40382 2.52865 3.32984 3.37099 3.54212 3.57068 3.64912 3.76129 3.79720 3.98509 4.13555 4.20569 4.21164 4.23133 4.33604 4.41631 4.45606 4.52850 4.60120 4.61857 4.72369 4.75725 4.77815 4.82286 4.85941 4.89077 4.93254 4.96239 5.04614 5.07754 5.14617 5.15685 5.27042 5.27675 5.41300 5.42961 5.53369 5.62444 5.70106 5.74366 5.86574 6.34946 6.43240 6.47033 7.17945 7.18592 7.26902 7.92269 8.35563 9.23535 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002604 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.898370 B =10751.328888 C =11168.821753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.126 4.126 3 C 0.134 3.866 4 H 0.057 0.943 5 C -0.119 4.119 6 C -0.110 4.110 7 H 0.139 0.861 8 C 0.513 3.487 9 O -0.580 6.580 10 N -0.602 5.602 11 C 0.124 3.876 12 C -0.134 4.134 13 C 0.174 3.826 14 N -0.612 5.612 15 C 0.182 3.818 16 C -0.256 4.256 17 H 0.073 0.927 18 C -0.055 4.055 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.293 1.293 23 H -0.298 1.298 24 C -0.138 4.138 25 C 0.114 3.886 26 C -0.116 4.116 27 C 0.529 3.471 28 O -0.620 6.620 29 N -0.702 5.702 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.005 0.995 43 H 0.022 0.978 44 H 0.008 0.992 45 H 0.246 0.754 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.118 0.882 50 H 0.083 0.917 51 H 0.140 0.860 52 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 -17.721 -10.956 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.164 4.164 3 C 0.029 3.971 4 H 0.075 0.925 5 C -0.156 4.156 6 C -0.131 4.131 7 H 0.157 0.843 8 C 0.302 3.698 9 O -0.460 6.460 10 N -0.334 5.334 11 C 0.001 3.999 12 C -0.174 4.174 13 C 0.067 3.933 14 N -0.334 5.334 15 C 0.037 3.963 16 C -0.386 4.386 17 H 0.091 0.909 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.225 1.225 24 C -0.178 4.178 25 C -0.008 4.008 26 C -0.156 4.156 27 C 0.318 3.682 28 O -0.504 6.504 29 N -0.352 5.352 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.041 0.959 44 H 0.027 0.973 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.102 0.898 51 H 0.157 0.843 52 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.128 -17.033 -11.491 23.366 hybrid contribution 0.061 1.174 1.029 1.563 sum -11.066 -15.858 -10.461 21.986 Atomic orbital electron populations 1.21824 0.95949 1.02575 1.01328 1.21884 0.96131 0.93722 1.04641 1.21192 0.96215 0.94233 0.85438 0.92525 1.22092 0.93079 0.93518 1.06935 1.21604 1.03298 0.95667 0.92575 0.84350 1.21056 0.83786 0.82850 0.82109 1.90723 1.30127 1.49978 1.75197 1.48213 1.36905 1.37304 1.10994 1.21444 0.94560 0.90313 0.93573 1.22283 0.97018 0.98650 0.99414 1.20515 0.88553 0.90470 0.93771 1.44211 1.40920 1.44577 1.03679 1.20398 0.92503 0.92411 0.90956 1.19596 0.98122 1.37280 0.83609 0.90898 1.25639 0.95071 1.02983 1.01283 1.70247 1.01233 1.51551 1.35454 0.85278 0.77667 0.76822 0.81125 1.19052 1.21985 1.22485 1.22327 0.98369 0.98428 0.98670 1.22037 0.86391 0.92357 1.00050 1.21536 0.93047 1.04339 0.96649 1.20366 0.89451 0.76775 0.81608 1.90698 1.75656 1.53669 1.30379 1.45536 1.17592 1.46307 1.25737 0.92997 0.93640 0.91083 0.90235 0.88163 0.86710 0.86342 0.90056 0.90924 0.91981 0.93639 0.91795 0.97673 0.95935 0.97295 0.94502 0.93352 0.91624 0.89002 0.86388 0.89819 0.84254 0.77002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.75 71.98 0.70 -0.84 16 2 C -0.13 -0.97 5.58 30.60 0.17 -0.80 16 3 C 0.13 1.73 2.39 45.11 0.11 1.83 16 4 H 0.06 0.98 7.30 -2.39 -0.02 0.96 16 5 C -0.12 -0.98 4.74 30.68 0.15 -0.84 16 6 C -0.11 -1.59 2.18 -11.40 -0.02 -1.62 16 7 H 0.14 1.31 6.65 -2.39 -0.02 1.29 16 8 C 0.51 11.85 5.46 87.66 0.48 12.33 16 9 O -0.58 -18.71 14.13 -3.01 -0.04 -18.75 16 10 N -0.60 -13.28 2.97 -818.89 -2.43 -15.72 16 11 C 0.12 3.23 6.42 86.36 0.55 3.78 16 12 C -0.13 -4.24 5.32 30.67 0.16 -4.08 16 13 C 0.17 6.11 2.55 45.02 0.11 6.23 16 14 N -0.61 -28.72 2.81 -702.62 -1.98 -30.70 16 15 C 0.18 8.83 8.04 127.77 1.03 9.86 16 16 C -0.26 -13.38 9.61 84.03 0.81 -12.57 16 17 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 18 C -0.05 -2.99 5.04 84.86 0.43 -2.56 16 19 N -0.94 -54.20 10.71 21.65 0.23 -53.97 16 20 Si 0.96 44.00 29.58 68.60 2.03 46.03 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 C -0.14 -3.90 5.34 30.67 0.16 -3.74 16 25 C 0.11 2.01 5.83 86.36 0.50 2.51 16 26 C -0.12 -2.18 5.20 29.71 0.15 -2.03 16 27 C 0.53 13.62 6.39 87.71 0.56 14.18 16 28 O -0.62 -22.18 17.78 -3.03 -0.05 -22.23 16 29 N -0.70 -13.80 4.94 -446.64 -2.21 -16.01 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.51 6.63 -2.39 -0.02 0.50 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 0.46 8.11 -2.38 -0.02 0.44 16 36 H 0.12 0.45 7.12 -2.39 -0.02 0.44 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 2.11 7.04 -2.39 -0.02 2.09 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.04 1.58 6.72 -2.39 -0.02 1.56 16 41 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 42 H 0.01 0.26 7.41 -2.39 -0.02 0.25 16 43 H 0.02 0.95 6.46 -2.39 -0.02 0.94 16 44 H 0.01 0.45 7.21 -2.39 -0.02 0.43 16 45 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.05 1.49 7.72 -2.39 -0.02 1.47 16 47 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.12 1.23 4.95 -2.39 -0.01 1.22 16 50 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 51 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.39 7.80 6.98 -92.71 -0.65 7.16 16 Total: -1.00 -77.62 389.72 1.87 -75.75 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.27 Total: 13.96 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.06 Total: 21.64 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.39 Total: -116.39 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.10 Total: -40.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -77.62 1.87 -75.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985549809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.494 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds