Wall clock time and date at job start Tue Mar 31 2020 19:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 H 1.08997 * 109.87700 * 305.08772 * 3 2 1 5 5 C 1.54326 * 109.88187 * 66.10711 * 3 2 1 6 6 C 1.55157 * 102.94091 * 141.61055 * 5 3 2 7 7 C 1.54908 * 101.58608 * 324.49620 * 6 5 3 8 8 N 1.47030 * 109.88317 * 184.07601 * 3 2 1 9 9 C 1.34769 * 125.64845 * 61.61097 * 8 3 2 10 10 O 1.21344 * 120.00128 * 6.27469 * 9 8 3 11 11 C 1.49452 * 119.99814 * 186.27925 * 9 8 3 12 12 O 1.21347 * 120.00235 * 6.79257 * 11 9 8 13 13 N 1.34776 * 120.00063 * 186.79127 * 11 9 8 14 14 C 1.46928 * 120.63179 * 188.38490 * 13 11 9 15 15 C 1.52755 * 109.00876 * 233.58520 * 14 13 11 16 16 C 1.53048 * 109.38311 * 305.58652 * 15 14 13 17 17 N 1.46496 * 109.46014 * 181.25890 * 16 15 14 18 18 C 1.46500 * 120.00326 * 299.93473 * 17 16 15 19 19 C 1.36935 * 120.00188 * 119.93237 * 17 16 15 20 20 H 1.08006 * 119.99733 * 8.08302 * 19 17 16 21 21 C 1.38811 * 120.00581 * 188.08285 * 19 17 16 22 22 N 1.31616 * 119.99926 * 30.37911 * 21 19 17 23 23 Si 1.86803 * 120.00005 * 210.37872 * 21 19 17 24 24 H 1.48504 * 109.47142 * 94.99790 * 23 21 19 25 25 H 1.48498 * 109.46861 * 214.99401 * 23 21 19 26 26 H 1.48498 * 109.47211 * 334.99673 * 23 21 19 27 27 C 1.53040 * 109.53575 * 61.24025 * 16 15 14 28 28 C 1.46930 * 120.62862 * 8.66399 * 13 11 9 29 29 H 1.09002 * 109.47604 * 64.68004 * 1 2 3 30 30 H 1.08994 * 109.47627 * 184.68533 * 1 2 3 31 31 H 1.09001 * 109.46903 * 304.68737 * 1 2 3 32 32 H 1.09008 * 109.46524 * 240.00428 * 2 1 3 33 33 H 1.08995 * 109.47590 * 120.00495 * 2 1 3 34 34 H 1.09001 * 110.72085 * 259.97198 * 5 3 2 35 35 H 1.09001 * 110.72061 * 23.06862 * 5 3 2 36 36 H 1.08996 * 111.00370 * 82.57621 * 6 5 3 37 37 H 1.09007 * 111.00291 * 206.38793 * 6 5 3 38 38 H 1.08999 * 110.36874 * 155.85009 * 7 6 5 39 39 H 1.09002 * 110.36808 * 278.06584 * 7 6 5 40 40 H 1.08996 * 109.58469 * 353.41797 * 14 13 11 41 41 H 1.08999 * 109.58239 * 113.84166 * 14 13 11 42 42 H 1.08997 * 109.56788 * 185.55614 * 15 14 13 43 43 H 1.08998 * 109.39082 * 65.51008 * 15 14 13 44 44 H 1.08997 * 109.46012 * 301.22010 * 16 15 14 45 45 H 1.08998 * 109.47344 * 95.79236 * 18 17 16 46 46 H 1.09003 * 109.47606 * 215.79469 * 18 17 16 47 47 H 1.08999 * 109.47216 * 335.78827 * 18 17 16 48 48 H 0.96996 * 120.00171 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.49828 * 178.68263 * 27 16 15 50 50 H 1.09003 * 109.49839 * 58.58816 * 27 16 15 51 51 H 1.08999 * 109.58776 * 246.15310 * 28 13 11 52 52 H 1.08999 * 109.58575 * 6.58159 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6080 1.9883 -0.8388 5 6 1.6608 2.1332 1.3269 6 6 2.9104 2.9989 1.6375 7 6 4.0538 2.0928 1.1167 8 7 3.5070 1.4541 -0.0983 9 6 4.2294 0.9626 -1.1244 10 8 3.6693 0.5603 -2.1228 11 6 5.7202 0.9131 -1.0324 12 8 6.2738 1.1987 0.0090 13 7 6.4500 0.5512 -2.1062 14 6 7.8959 0.3199 -1.9853 15 6 8.6246 1.1732 -3.0218 16 6 8.0550 0.8805 -4.4118 17 7 8.7731 1.6758 -5.4109 18 6 8.7647 3.1383 -5.3269 19 6 9.4522 1.0521 -6.4233 20 1 9.3529 -0.0143 -6.5633 21 6 10.2682 1.7902 -7.2695 22 7 10.8722 2.8712 -6.8236 23 14 10.5090 1.2492 -9.0412 24 1 9.5500 1.9725 -9.9144 25 1 11.8973 1.5578 -9.4686 26 1 10.2712 -0.2127 -9.1491 27 6 6.5688 1.2443 -4.4428 28 6 5.8157 0.3864 -3.4213 29 1 -0.3634 0.4395 -0.9289 30 1 -0.3634 -1.0241 0.0839 31 1 -0.3633 0.5849 0.8450 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.7794 2.7611 1.1967 35 1 1.4945 1.3955 2.1119 36 1 2.8786 3.9412 1.0906 37 1 3.0076 3.1745 2.7089 38 1 4.9292 2.6924 0.8671 39 1 4.3105 1.3398 1.8618 40 1 8.2282 0.5991 -0.9854 41 1 8.1137 -0.7329 -2.1644 42 1 9.6883 0.9359 -3.0073 43 1 8.4839 2.2280 -2.7857 44 1 8.1743 -0.1792 -4.6374 45 1 9.6622 3.4777 -4.8098 46 1 8.7430 3.5599 -6.3318 47 1 7.8826 3.4656 -4.7766 48 1 11.4422 3.3871 -7.4150 49 1 6.1693 1.0576 -5.4397 50 1 6.4469 2.2983 -4.1931 51 1 5.8605 -0.6610 -3.7199 52 1 4.7760 0.7093 -3.3685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985743554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:32 Heat of formation + Delta-G solvation = -26.408657 kcal Electronic energy + Delta-G solvation = -30824.313202 eV Core-core repulsion = 26825.235919 eV Total energy + Delta-G solvation = -3999.077283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.12153 -39.47735 -37.83258 -37.57493 -35.11587 -33.79168 -32.25041 -31.84788 -30.80293 -29.79116 -28.21828 -26.24411 -25.97545 -24.56529 -23.45564 -22.87853 -22.32330 -21.68795 -20.61703 -19.55442 -18.65210 -17.36942 -17.00852 -16.73614 -16.57774 -15.79109 -15.50633 -14.99970 -14.94813 -14.44213 -14.16212 -13.98907 -13.86135 -13.75387 -13.52501 -13.45395 -13.28503 -13.03983 -12.73734 -12.45194 -12.42961 -12.23446 -11.98838 -11.72306 -11.63867 -11.58523 -11.52662 -11.07648 -11.07009 -11.00180 -10.84393 -10.79609 -10.67260 -10.39175 -10.21434 -10.13779 -9.78891 -9.64645 -9.17381 -8.91354 -8.55349 -8.36528 -6.89088 -5.77985 -3.01505 1.40135 2.18187 3.15781 3.32910 3.42349 3.51146 3.51496 4.03122 4.19951 4.34608 4.44370 4.53512 4.76137 4.83735 4.92683 5.02992 5.14609 5.21818 5.28730 5.31337 5.33774 5.38022 5.48147 5.50839 5.51636 5.57294 5.60599 5.70705 5.72888 5.74461 5.79713 5.81071 5.90697 5.94708 6.06311 6.13644 6.24616 6.29415 6.36117 6.52133 6.56702 6.75726 6.96580 6.98791 7.01932 7.33110 7.39048 7.63288 7.63997 7.85411 7.99813 8.33285 9.21912 9.90942 10.36895 11.30029 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.002461 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.903762 B =11373.740834 C =11819.794954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.135 3.865 4 H 0.081 0.919 5 C -0.127 4.127 6 C -0.138 4.138 7 C 0.104 3.896 8 N -0.590 5.590 9 C 0.524 3.476 10 O -0.509 6.509 11 C 0.506 3.494 12 O -0.529 6.529 13 N -0.570 5.570 14 C 0.111 3.889 15 C -0.146 4.146 16 C 0.179 3.821 17 N -0.597 5.597 18 C 0.160 3.840 19 C -0.258 4.258 20 H 0.074 0.926 21 C 0.002 3.998 22 N -0.894 5.894 23 Si 0.887 3.113 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.280 1.280 27 C -0.146 4.146 28 C 0.073 3.927 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.022 0.978 46 H 0.045 0.955 47 H 0.003 0.997 48 H 0.252 0.748 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.732 -2.417 18.546 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.032 3.968 4 H 0.099 0.901 5 C -0.165 4.165 6 C -0.176 4.176 7 C -0.018 4.018 8 N -0.325 5.325 9 C 0.309 3.691 10 O -0.386 6.386 11 C 0.288 3.712 12 O -0.407 6.407 13 N -0.303 5.303 14 C -0.011 4.011 15 C -0.186 4.186 16 C 0.070 3.930 17 N -0.318 5.318 18 C 0.015 3.985 19 C -0.386 4.386 20 H 0.092 0.908 21 C -0.196 4.196 22 N -0.538 5.538 23 Si 0.717 3.283 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.205 1.205 27 C -0.186 4.186 28 C -0.048 4.048 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.021 0.979 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.525 -2.398 18.378 26.921 hybrid contribution 0.422 -0.192 -1.079 1.174 sum -19.104 -2.590 17.299 25.902 Atomic orbital electron populations 1.21711 0.94818 1.01987 1.01997 1.21898 0.96453 0.95914 1.03192 1.21758 0.79277 0.97013 0.98744 0.90068 1.22743 0.98471 0.99133 0.96139 1.22874 0.94188 0.98451 1.02086 1.22571 0.97141 0.96059 0.86011 1.48460 1.07079 1.57434 1.19478 1.19998 0.88300 0.78569 0.82256 1.90517 1.72248 1.47508 1.28343 1.19848 0.87557 0.79290 0.84510 1.90703 1.72435 1.48119 1.29431 1.48078 1.09072 1.64287 1.08851 1.21767 0.77936 1.00084 1.01333 1.22453 1.00340 0.99676 0.96119 1.20283 0.89548 0.95552 0.87576 1.44098 1.57670 1.01593 1.28466 1.20758 0.95346 0.82961 0.99435 1.19233 1.21836 0.93195 1.04371 0.90806 1.24668 0.97668 0.98056 0.99252 1.70270 1.29896 1.19909 1.33741 0.86481 0.76786 0.78160 0.86876 1.21672 1.22142 1.20504 1.22488 0.98052 0.99603 0.98476 1.22880 1.00615 1.00881 0.80469 0.92446 0.92425 0.92505 0.90577 0.91761 0.89832 0.90182 0.90435 0.89497 0.88974 0.90663 0.89418 0.91141 0.90390 0.92145 0.91814 0.95983 0.93669 0.97889 0.93813 0.90514 0.92257 0.91445 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.82 37.15 0.36 -0.57 16 2 C -0.14 -1.15 5.39 -26.74 -0.14 -1.29 16 3 C 0.13 1.17 2.87 -66.95 -0.19 0.97 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.13 -0.73 5.48 -24.90 -0.14 -0.87 16 6 C -0.14 -0.86 7.08 -24.58 -0.17 -1.03 16 7 C 0.10 0.97 5.78 -2.35 -0.01 0.96 16 8 N -0.59 -6.56 3.08 -163.25 -0.50 -7.06 16 9 C 0.52 7.24 7.48 -11.59 -0.09 7.16 16 10 O -0.51 -7.64 12.42 5.50 0.07 -7.57 16 11 C 0.51 7.65 7.65 -11.58 -0.09 7.57 16 12 O -0.53 -8.49 13.57 5.50 0.07 -8.42 16 13 N -0.57 -8.74 2.98 -173.54 -0.52 -9.26 16 14 C 0.11 1.69 6.42 -3.93 -0.03 1.66 16 15 C -0.15 -2.63 5.32 -26.83 -0.14 -2.77 16 16 C 0.18 3.57 2.55 -67.89 -0.17 3.39 16 17 N -0.60 -14.76 2.82 -173.44 -0.49 -15.25 16 18 C 0.16 3.95 8.13 59.85 0.49 4.44 16 19 C -0.26 -7.05 9.64 -15.06 -0.15 -7.20 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C 0.00 0.06 4.77 -17.43 -0.08 -0.02 16 22 N -0.89 -26.22 11.03 55.49 0.61 -25.61 16 23 Si 0.89 21.86 29.65 -169.99 -5.04 16.82 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.15 -2.55 5.32 -26.61 -0.14 -2.70 16 28 C 0.07 1.11 5.98 -3.71 -0.02 1.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 7.30 -51.93 -0.38 -0.09 16 32 H 0.08 0.83 6.95 -51.92 -0.36 0.47 16 33 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.40 7.78 -51.93 -0.40 0.00 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.09 1.00 6.78 -51.93 -0.35 0.65 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 44 H 0.06 1.28 7.78 -51.93 -0.40 0.87 16 45 H 0.02 0.59 7.70 -51.93 -0.40 0.19 16 46 H 0.04 1.21 6.86 -51.93 -0.36 0.85 16 47 H 0.00 0.06 6.47 -51.93 -0.34 -0.28 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 52 H 0.13 2.00 4.32 -54.76 -0.24 1.77 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -31.19 393.67 -9.53 -40.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.96 Total: -1.09 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -0.72 Total: 10.78 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.90 Total: -57.18 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.14 Total: -15.99 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.04 Total: 16.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.19 -9.53 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985743554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.317 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds