Wall clock time and date at job start Tue Mar 31 2020 19:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 H 1.08997 * 109.87700 * 305.08772 * 3 2 1 5 5 C 1.54326 * 109.88187 * 66.10711 * 3 2 1 6 6 C 1.55157 * 102.94091 * 141.61055 * 5 3 2 7 7 C 1.54908 * 101.58608 * 324.49620 * 6 5 3 8 8 N 1.47030 * 109.88317 * 184.07601 * 3 2 1 9 9 C 1.34769 * 125.64845 * 61.61097 * 8 3 2 10 10 O 1.21344 * 120.00128 * 6.27469 * 9 8 3 11 11 C 1.49452 * 119.99814 * 186.27925 * 9 8 3 12 12 O 1.21347 * 120.00235 * 6.79257 * 11 9 8 13 13 N 1.34776 * 120.00063 * 186.79127 * 11 9 8 14 14 C 1.46928 * 120.63179 * 188.38490 * 13 11 9 15 15 C 1.52755 * 109.00876 * 233.58520 * 14 13 11 16 16 C 1.53048 * 109.38311 * 305.58652 * 15 14 13 17 17 N 1.46496 * 109.46014 * 181.25890 * 16 15 14 18 18 C 1.46500 * 120.00326 * 299.93473 * 17 16 15 19 19 C 1.36935 * 120.00188 * 119.93237 * 17 16 15 20 20 H 1.08006 * 119.99733 * 8.08302 * 19 17 16 21 21 C 1.38811 * 120.00581 * 188.08285 * 19 17 16 22 22 N 1.31616 * 119.99926 * 30.37911 * 21 19 17 23 23 Si 1.86803 * 120.00005 * 210.37872 * 21 19 17 24 24 H 1.48504 * 109.47142 * 94.99790 * 23 21 19 25 25 H 1.48498 * 109.46861 * 214.99401 * 23 21 19 26 26 H 1.48498 * 109.47211 * 334.99673 * 23 21 19 27 27 C 1.53040 * 109.53575 * 61.24025 * 16 15 14 28 28 C 1.46930 * 120.62862 * 8.66399 * 13 11 9 29 29 H 1.09002 * 109.47604 * 64.68004 * 1 2 3 30 30 H 1.08994 * 109.47627 * 184.68533 * 1 2 3 31 31 H 1.09001 * 109.46903 * 304.68737 * 1 2 3 32 32 H 1.09008 * 109.46524 * 240.00428 * 2 1 3 33 33 H 1.08995 * 109.47590 * 120.00495 * 2 1 3 34 34 H 1.09001 * 110.72085 * 259.97198 * 5 3 2 35 35 H 1.09001 * 110.72061 * 23.06862 * 5 3 2 36 36 H 1.08996 * 111.00370 * 82.57621 * 6 5 3 37 37 H 1.09007 * 111.00291 * 206.38793 * 6 5 3 38 38 H 1.08999 * 110.36874 * 155.85009 * 7 6 5 39 39 H 1.09002 * 110.36808 * 278.06584 * 7 6 5 40 40 H 1.08996 * 109.58469 * 353.41797 * 14 13 11 41 41 H 1.08999 * 109.58239 * 113.84166 * 14 13 11 42 42 H 1.08997 * 109.56788 * 185.55614 * 15 14 13 43 43 H 1.08998 * 109.39082 * 65.51008 * 15 14 13 44 44 H 1.08997 * 109.46012 * 301.22010 * 16 15 14 45 45 H 1.08998 * 109.47344 * 95.79236 * 18 17 16 46 46 H 1.09003 * 109.47606 * 215.79469 * 18 17 16 47 47 H 1.08999 * 109.47216 * 335.78827 * 18 17 16 48 48 H 0.96996 * 120.00171 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.49828 * 178.68263 * 27 16 15 50 50 H 1.09003 * 109.49839 * 58.58816 * 27 16 15 51 51 H 1.08999 * 109.58776 * 246.15310 * 28 13 11 52 52 H 1.08999 * 109.58575 * 6.58159 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6080 1.9883 -0.8388 5 6 1.6608 2.1332 1.3269 6 6 2.9104 2.9989 1.6375 7 6 4.0538 2.0928 1.1167 8 7 3.5070 1.4541 -0.0983 9 6 4.2294 0.9626 -1.1244 10 8 3.6693 0.5603 -2.1228 11 6 5.7202 0.9131 -1.0324 12 8 6.2738 1.1987 0.0090 13 7 6.4500 0.5512 -2.1062 14 6 7.8959 0.3199 -1.9853 15 6 8.6246 1.1732 -3.0218 16 6 8.0550 0.8805 -4.4118 17 7 8.7731 1.6758 -5.4109 18 6 8.7647 3.1383 -5.3269 19 6 9.4522 1.0521 -6.4233 20 1 9.3529 -0.0143 -6.5633 21 6 10.2682 1.7902 -7.2695 22 7 10.8722 2.8712 -6.8236 23 14 10.5090 1.2492 -9.0412 24 1 9.5500 1.9725 -9.9144 25 1 11.8973 1.5578 -9.4686 26 1 10.2712 -0.2127 -9.1491 27 6 6.5688 1.2443 -4.4428 28 6 5.8157 0.3864 -3.4213 29 1 -0.3634 0.4395 -0.9289 30 1 -0.3634 -1.0241 0.0839 31 1 -0.3633 0.5849 0.8450 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.7794 2.7611 1.1967 35 1 1.4945 1.3955 2.1119 36 1 2.8786 3.9412 1.0906 37 1 3.0076 3.1745 2.7089 38 1 4.9292 2.6924 0.8671 39 1 4.3105 1.3398 1.8618 40 1 8.2282 0.5991 -0.9854 41 1 8.1137 -0.7329 -2.1644 42 1 9.6883 0.9359 -3.0073 43 1 8.4839 2.2280 -2.7857 44 1 8.1743 -0.1792 -4.6374 45 1 9.6622 3.4777 -4.8098 46 1 8.7430 3.5599 -6.3318 47 1 7.8826 3.4656 -4.7766 48 1 11.4422 3.3871 -7.4150 49 1 6.1693 1.0576 -5.4397 50 1 6.4469 2.2983 -4.1931 51 1 5.8605 -0.6610 -3.7199 52 1 4.7760 0.7093 -3.3685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985743554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:31 Heat of formation + Delta-G solvation = -44.298311 kcal Electronic energy + Delta-G solvation = -30825.088956 eV Core-core repulsion = 26825.235919 eV Total energy + Delta-G solvation = -3999.853037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.18912 -40.52308 -39.02100 -38.80746 -36.78932 -34.47970 -33.97801 -32.63221 -32.18187 -31.57461 -28.84600 -28.07805 -27.42464 -25.83811 -24.59056 -24.09716 -23.41041 -22.78791 -21.61882 -20.69112 -19.92586 -18.79919 -18.34045 -18.12805 -17.63713 -17.04477 -16.78184 -16.39708 -15.88224 -15.67447 -15.50511 -15.19420 -15.10014 -15.04017 -14.72090 -14.60011 -14.43128 -14.13367 -13.93370 -13.76402 -13.43995 -13.27162 -13.24008 -12.99095 -12.94116 -12.67244 -12.61648 -12.44972 -12.38424 -12.18203 -12.12491 -12.10124 -12.00420 -11.77942 -11.62983 -11.58748 -11.43530 -11.28733 -10.53863 -10.25847 -9.92659 -9.73775 -8.93509 -7.90189 -5.15332 0.27489 1.16120 1.45773 1.49715 1.57403 2.02492 2.28313 2.52205 3.04082 3.21342 3.56821 3.59114 3.65811 3.85737 3.87152 4.08015 4.14179 4.16747 4.22898 4.25398 4.33821 4.34434 4.47198 4.51536 4.56966 4.65859 4.72990 4.76145 4.82717 4.85032 4.87455 4.93281 4.98138 4.99670 5.03565 5.10115 5.15172 5.16325 5.19780 5.25273 5.28633 5.35646 5.41736 5.45600 5.52985 5.58386 5.70141 6.00170 6.17594 6.25383 6.53750 6.86063 7.11318 7.88146 8.30435 9.17015 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.002461 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.903762 B =11373.740834 C =11819.794954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.126 3.874 4 H 0.074 0.926 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.097 3.903 8 N -0.586 5.586 9 C 0.520 3.480 10 O -0.527 6.527 11 C 0.504 3.496 12 O -0.540 6.540 13 N -0.576 5.576 14 C 0.120 3.880 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.611 5.611 18 C 0.178 3.822 19 C -0.262 4.262 20 H 0.078 0.922 21 C -0.053 4.053 22 N -0.929 5.929 23 Si 0.952 3.048 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.267 1.267 27 C -0.133 4.133 28 C 0.085 3.915 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.065 0.935 45 H -0.005 1.005 46 H 0.018 0.982 47 H 0.028 0.972 48 H 0.248 0.752 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.081 0.919 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.082 -3.193 20.101 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.155 4.155 6 C -0.166 4.166 7 C -0.024 4.024 8 N -0.319 5.319 9 C 0.303 3.697 10 O -0.407 6.407 11 C 0.287 3.713 12 O -0.418 6.418 13 N -0.308 5.308 14 C -0.002 4.002 15 C -0.173 4.173 16 C 0.067 3.933 17 N -0.333 5.333 18 C 0.033 3.967 19 C -0.392 4.392 20 H 0.096 0.904 21 C -0.248 4.248 22 N -0.576 5.576 23 Si 0.781 3.219 24 H -0.219 1.219 25 H -0.227 1.227 26 H -0.192 1.192 27 C -0.173 4.173 28 C -0.036 4.036 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.014 0.986 46 H 0.037 0.963 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.099 0.901 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.918 -3.193 19.979 29.829 hybrid contribution 1.127 0.041 -1.458 1.844 sum -20.791 -3.152 18.521 28.022 Atomic orbital electron populations 1.21685 0.93025 1.02617 1.02685 1.21845 0.97953 0.95385 1.01856 1.22033 0.77554 0.97520 1.00426 0.90752 1.22773 0.98867 0.99317 0.94494 1.22870 0.92752 0.97652 1.03355 1.22716 0.97908 0.96436 0.85354 1.48633 1.08327 1.55884 1.19049 1.19751 0.87714 0.79267 0.82942 1.90494 1.72186 1.48808 1.29164 1.20163 0.88359 0.78632 0.84187 1.90694 1.72929 1.48419 1.29799 1.48117 1.09045 1.64568 1.09084 1.21654 0.77781 1.00430 1.00314 1.22232 0.99816 0.99345 0.95931 1.20521 0.90525 0.94995 0.87307 1.44338 1.57709 1.01787 1.29432 1.20451 0.95203 0.83339 0.97740 1.19574 1.21074 0.93542 1.04973 0.90407 1.25401 0.98205 0.98694 1.02509 1.70389 1.31166 1.21422 1.34581 0.85455 0.76043 0.78270 0.82096 1.21868 1.22676 1.19157 1.22308 0.96323 0.99441 0.99250 1.22783 1.00161 1.01034 0.79631 0.92823 0.92099 0.90492 0.93497 0.91487 0.87680 0.88779 0.90430 0.87137 0.90885 0.90358 0.89057 0.89231 0.91782 0.93641 0.91642 0.98640 0.96307 0.95331 0.94318 0.90787 0.93279 0.90118 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.82 71.98 0.71 -0.79 16 2 C -0.13 -2.04 5.39 30.59 0.16 -1.87 16 3 C 0.13 1.96 2.87 45.34 0.13 2.09 16 4 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 5 C -0.12 -0.95 5.48 31.78 0.17 -0.78 16 6 C -0.13 -1.23 7.08 31.99 0.23 -1.00 16 7 C 0.10 1.67 5.78 86.79 0.50 2.18 16 8 N -0.59 -12.39 3.08 -788.78 -2.43 -14.82 16 9 C 0.52 14.06 7.48 87.27 0.65 14.71 16 10 O -0.53 -15.60 12.42 -3.23 -0.04 -15.65 16 11 C 0.50 14.91 7.65 87.27 0.67 15.58 16 12 O -0.54 -17.01 13.57 -3.24 -0.04 -17.05 16 13 N -0.58 -17.09 2.98 -821.32 -2.45 -19.53 16 14 C 0.12 3.54 6.42 86.22 0.55 4.09 16 15 C -0.13 -4.80 5.32 30.53 0.16 -4.63 16 16 C 0.17 6.86 2.55 45.02 0.11 6.97 16 17 N -0.61 -30.53 2.82 -702.63 -1.98 -32.51 16 18 C 0.18 9.03 8.13 127.77 1.04 10.07 16 19 C -0.26 -14.41 9.64 84.03 0.81 -13.60 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.05 -2.99 4.77 84.86 0.40 -2.58 16 22 N -0.93 -55.92 11.03 21.65 0.24 -55.68 16 23 Si 0.95 45.52 29.65 68.60 2.03 47.55 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.13 -4.58 5.32 30.67 0.16 -4.42 16 28 C 0.09 2.49 5.98 86.36 0.52 3.01 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.51 7.30 -2.39 -0.02 0.49 16 32 H 0.05 1.00 6.95 -2.38 -0.02 0.99 16 33 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.56 7.78 -2.39 -0.02 0.54 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.07 1.55 6.78 -2.39 -0.02 1.53 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 2.66 7.00 -2.39 -0.02 2.65 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.04 1.76 7.72 -2.39 -0.02 1.74 16 44 H 0.07 2.57 7.78 -2.39 -0.02 2.55 16 45 H 0.00 -0.26 7.70 -2.39 -0.02 -0.28 16 46 H 0.02 1.02 6.86 -2.39 -0.02 1.00 16 47 H 0.03 1.26 6.47 -2.39 -0.02 1.25 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.05 1.78 6.72 -2.39 -0.02 1.76 16 51 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 52 H 0.13 3.98 4.32 -47.18 -0.20 3.77 16 Total: -1.00 -68.24 393.67 3.02 -65.22 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.70 Total: 13.46 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 6.99 Total: 29.02 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.61 Total: -122.55 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.08 Total: -32.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.24 3.02 -65.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985743554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.921 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds