Wall clock time and date at job start Tue Mar 31 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46539 * 56.44645 * 3 2 1 5 5 C 1.50700 * 109.47181 * 176.44463 * 3 2 1 6 6 O 1.21287 * 119.99705 * 112.62870 * 5 3 2 7 7 N 1.34774 * 119.99950 * 292.35246 * 5 3 2 8 8 C 1.46935 * 120.62790 * 176.67036 * 7 5 3 9 9 C 1.53623 * 108.54149 * 126.36950 * 8 7 5 10 10 C 1.53039 * 109.24139 * 54.85971 * 9 8 7 11 11 N 1.46500 * 109.44987 * 178.49837 * 10 9 8 12 12 C 1.46506 * 120.00115 * 60.05426 * 11 10 9 13 13 C 1.36938 * 119.99941 * 240.06068 * 11 10 9 14 14 H 1.07994 * 120.00043 * 19.97380 * 13 11 10 15 15 C 1.38813 * 119.99996 * 199.97399 * 13 11 10 16 16 N 1.31619 * 119.99758 * 14.96160 * 15 13 11 17 17 Si 1.86800 * 119.99966 * 194.96028 * 15 13 11 18 18 H 1.48503 * 109.46865 * 94.98454 * 17 15 13 19 19 H 1.48503 * 109.46943 * 214.98178 * 17 15 13 20 20 H 1.48494 * 109.47303 * 334.98148 * 17 15 13 21 21 C 1.53043 * 109.53516 * 298.50655 * 10 9 8 22 22 C 1.46920 * 120.63504 * 356.95113 * 7 5 3 23 23 N 1.46499 * 109.47014 * 296.44562 * 3 2 1 24 24 C 1.46766 * 124.34344 * 119.72301 * 23 3 2 25 25 C 1.54672 * 105.37684 * 162.85661 * 24 23 3 26 26 C 1.54624 * 101.68424 * 25.76529 * 25 24 23 27 27 C 1.34415 * 124.35011 * 300.02570 * 23 3 2 28 28 O 1.21276 * 124.94500 * 0.38120 * 27 23 3 29 29 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47344 * 300.00109 * 1 2 3 31 31 H 1.08999 * 109.47376 * 59.99903 * 1 2 3 32 32 H 1.08995 * 109.47496 * 239.99965 * 2 1 3 33 33 H 1.09002 * 109.47288 * 119.99582 * 2 1 3 34 34 H 1.08997 * 109.58532 * 246.20437 * 8 7 5 35 35 H 1.08999 * 109.58664 * 6.62480 * 8 7 5 36 36 H 1.08998 * 109.63394 * 294.86573 * 9 8 7 37 37 H 1.08997 * 109.43015 * 174.72403 * 9 8 7 38 38 H 1.08994 * 109.46395 * 58.52508 * 10 9 8 39 39 H 1.09003 * 109.46598 * 94.58696 * 12 11 10 40 40 H 1.08997 * 109.46897 * 214.58308 * 12 11 10 41 41 H 1.08998 * 109.46999 * 334.58348 * 12 11 10 42 42 H 0.97007 * 119.99807 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.50127 * 301.41199 * 21 10 9 44 44 H 1.09003 * 109.52374 * 181.33178 * 21 10 9 45 45 H 1.09000 * 109.58863 * 353.37521 * 22 7 5 46 46 H 1.09007 * 109.58649 * 113.65327 * 22 7 5 47 47 H 1.09001 * 110.24775 * 281.98234 * 24 23 3 48 48 H 1.08993 * 110.24783 * 43.98733 * 24 23 3 49 49 H 1.09003 * 111.18861 * 267.58944 * 25 24 23 50 50 H 1.08996 * 110.85215 * 143.78912 * 25 24 23 51 51 H 1.09000 * 110.48781 * 216.30787 * 26 25 24 52 52 H 1.09003 * 110.59872 * 93.71893 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6255 1.9743 0.8565 5 6 3.5444 1.4434 0.0881 6 8 4.2067 1.8278 -0.8525 7 7 4.1537 1.0224 1.2141 8 6 5.6193 0.9486 1.2894 9 6 6.0856 1.7403 2.5206 10 6 5.3654 1.2112 3.7629 11 7 5.8333 1.9391 4.9451 12 6 5.6594 3.3914 5.0275 13 6 6.4335 1.2619 5.9729 14 1 6.8531 0.2817 5.8016 15 6 6.5025 1.8354 7.2352 16 7 5.7513 2.8760 7.5271 17 14 7.6613 1.1302 8.5194 18 1 8.9421 1.8815 8.4961 19 1 7.0419 1.2495 9.8638 20 1 7.9211 -0.3007 8.2193 21 6 3.8566 1.4126 3.6044 22 6 3.3651 0.6226 2.3875 23 7 1.6228 2.1079 -1.2367 24 6 0.7716 3.3025 -1.2876 25 6 0.9643 3.8831 -2.7082 26 6 1.3690 2.6238 -3.5090 27 6 1.9657 1.6995 -2.4705 28 8 2.6536 0.7313 -2.7156 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9284 -0.0925 1.3824 35 1 6.0537 1.3818 0.3885 36 1 5.8521 2.7965 2.3868 37 1 7.1616 1.6178 2.6441 38 1 5.5794 0.1491 3.8821 39 1 4.7390 3.6170 5.5663 40 1 6.5063 3.8293 5.5558 41 1 5.6034 3.8083 4.0220 42 1 5.7992 3.2766 8.4093 43 1 3.6441 2.4720 3.4605 44 1 3.3456 1.0574 4.4993 45 1 2.3117 0.8406 2.2114 46 1 3.4922 -0.4451 2.5666 47 1 -0.2714 3.0295 -1.1271 48 1 1.0924 4.0265 -0.5387 49 1 1.7598 4.6282 -2.7246 50 1 0.0318 4.3025 -3.0858 51 1 2.1109 2.8757 -4.2668 52 1 0.4943 2.1652 -3.9703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985795287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:17 Heat of formation + Delta-G solvation = -37.936871 kcal Electronic energy + Delta-G solvation = -31353.794179 eV Core-core repulsion = 27354.216994 eV Total energy + Delta-G solvation = -3999.577184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.04893 -39.56596 -37.42081 -36.42127 -35.28306 -34.89521 -32.16590 -31.20477 -30.79728 -29.76635 -27.76634 -27.35849 -26.01932 -24.75951 -22.91332 -22.61553 -22.12116 -21.99584 -20.42241 -19.12077 -18.37748 -17.28945 -17.01790 -16.75773 -16.58696 -15.64029 -15.11555 -15.07246 -14.82698 -14.51498 -14.10251 -13.89958 -13.79791 -13.60931 -13.47530 -13.37222 -13.18232 -13.11858 -12.79079 -12.71650 -12.35980 -12.23122 -12.03107 -11.81015 -11.65584 -11.56616 -11.38651 -11.25551 -11.13086 -10.98675 -10.85358 -10.77992 -10.38775 -10.22838 -10.15173 -9.86613 -9.80710 -9.64043 -9.57877 -8.75476 -8.56249 -8.41366 -6.79649 -5.73465 -3.16563 2.48507 2.72874 2.77708 3.25666 3.37438 3.44429 3.45301 4.13796 4.21728 4.44342 4.48263 4.53730 4.67510 4.69224 4.83854 4.99687 5.08239 5.17132 5.18247 5.23092 5.26382 5.36258 5.42337 5.42762 5.47999 5.48831 5.55969 5.60549 5.69593 5.71418 5.74304 5.84359 5.89979 5.99964 6.05188 6.16172 6.25797 6.32299 6.40402 6.49760 6.64412 6.78653 6.96307 6.98204 7.04349 7.39636 7.55165 7.70337 7.80218 8.16033 8.34027 8.37686 9.22710 9.87059 10.35281 11.31532 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.002612 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.666134 B =10716.035573 C =10747.239276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.145 3.855 4 H 0.111 0.889 5 C 0.504 3.496 6 O -0.526 6.526 7 N -0.605 5.605 8 C 0.117 3.883 9 C -0.145 4.145 10 C 0.180 3.820 11 N -0.597 5.597 12 C 0.165 3.835 13 C -0.253 4.253 14 H 0.069 0.931 15 C 0.000 4.000 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.146 4.146 22 C 0.105 3.895 23 N -0.607 5.607 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.526 3.474 28 O -0.514 6.514 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.042 0.958 41 H -0.003 1.003 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.099 0.901 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.590 -0.169 -17.705 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.038 3.962 4 H 0.129 0.871 5 C 0.290 3.710 6 O -0.402 6.402 7 N -0.339 5.339 8 C -0.006 4.006 9 C -0.185 4.185 10 C 0.072 3.928 11 N -0.318 5.318 12 C 0.020 3.980 13 C -0.382 4.382 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.186 4.186 22 C -0.018 4.018 23 N -0.342 5.342 24 C -0.019 4.019 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.314 3.686 28 O -0.389 6.389 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.118 0.882 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.830 -0.408 -18.099 22.782 hybrid contribution 0.559 -0.128 1.083 1.226 sum -13.271 -0.536 -17.016 21.586 Atomic orbital electron populations 1.21703 0.94619 1.02049 1.01818 1.21976 0.97020 0.94210 1.04640 1.20857 0.92254 0.95578 0.87520 0.87141 1.20713 0.90190 0.77640 0.82458 1.90694 1.66092 1.46453 1.36920 1.48103 1.07527 1.65384 1.12897 1.21721 0.78724 1.00367 0.99778 1.22540 1.01129 1.00018 0.94806 1.20267 0.90064 0.95839 0.86678 1.43985 1.68504 1.02897 1.16414 1.20733 1.00639 0.82787 0.93836 1.19260 1.29270 1.01751 0.87954 0.91317 1.24944 0.99264 0.98713 0.96893 1.70097 1.39496 1.25059 1.20649 0.86250 0.80725 0.78538 0.81118 1.21623 1.21861 1.20493 1.22522 1.00053 0.99963 0.96054 1.21964 0.94674 0.99542 0.85600 1.47930 1.51250 1.29756 1.05302 1.22145 0.94519 0.86690 0.98576 1.22603 1.03135 0.97185 0.93869 1.22310 1.02861 0.96059 0.98245 1.20692 0.79134 0.85013 0.83783 1.90703 1.36902 1.28385 1.82867 0.92217 0.92466 0.92744 0.89773 0.89772 0.91738 0.89707 0.92090 0.90918 0.91894 0.95528 0.93925 0.98423 0.93847 0.92199 0.90467 0.90566 0.91224 0.90896 0.90397 0.89870 0.89254 0.88207 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.79 37.15 0.36 -0.79 16 2 C -0.14 -1.47 4.97 -26.73 -0.13 -1.60 16 3 C 0.14 1.68 1.84 -69.08 -0.13 1.56 16 4 H 0.11 1.06 7.07 -51.93 -0.37 0.69 16 5 C 0.50 7.81 6.81 -10.99 -0.07 7.74 16 6 O -0.53 -10.17 13.95 -12.84 -0.18 -10.35 16 7 N -0.60 -8.87 2.97 -172.50 -0.51 -9.38 16 8 C 0.12 1.81 6.47 -3.48 -0.02 1.79 16 9 C -0.14 -2.52 5.34 -26.39 -0.14 -2.66 16 10 C 0.18 3.46 2.55 -67.89 -0.17 3.29 16 11 N -0.60 -14.40 2.81 -173.43 -0.49 -14.89 16 12 C 0.16 3.99 8.04 59.85 0.48 4.47 16 13 C -0.25 -6.77 9.62 -15.06 -0.14 -6.91 16 14 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 16 N -0.91 -26.02 10.65 55.49 0.59 -25.43 16 17 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.15 -2.39 5.34 -26.61 -0.14 -2.53 16 22 C 0.11 1.35 4.97 -3.72 -0.02 1.33 16 23 N -0.61 -6.74 2.06 -166.04 -0.34 -7.08 16 24 C 0.10 0.74 7.31 -3.02 -0.02 0.72 16 25 C -0.13 -0.78 7.19 -25.00 -0.18 -0.96 16 26 C -0.15 -1.29 6.86 -26.74 -0.18 -1.47 16 27 C 0.53 6.92 6.67 -10.86 -0.07 6.85 16 28 O -0.51 -9.09 15.12 -12.83 -0.19 -9.29 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 32 H 0.08 1.12 6.66 -51.93 -0.35 0.78 16 33 H 0.08 0.82 5.96 -51.93 -0.31 0.51 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 36 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.22 7.84 -51.93 -0.41 0.82 16 39 H 0.03 0.69 7.44 -51.93 -0.39 0.30 16 40 H 0.04 1.13 7.15 -51.93 -0.37 0.76 16 41 H 0.00 -0.06 6.46 -51.93 -0.34 -0.39 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.08 0.78 4.98 -51.93 -0.26 0.52 16 46 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 52 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -34.77 393.80 -9.81 -44.58 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.91 Total: -1.41 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -0.68 Total: 10.72 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.75 Total: -56.79 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.37 Total: -19.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.77 -9.81 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985795287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.641 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds