Wall clock time and date at job start Tue Mar 31 2020 20:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46539 * 56.44645 * 3 2 1 5 5 C 1.50700 * 109.47181 * 176.44463 * 3 2 1 6 6 O 1.21287 * 119.99705 * 112.62870 * 5 3 2 7 7 N 1.34774 * 119.99950 * 292.35246 * 5 3 2 8 8 C 1.46935 * 120.62790 * 176.67036 * 7 5 3 9 9 C 1.53623 * 108.54149 * 126.36950 * 8 7 5 10 10 C 1.53039 * 109.24139 * 54.85971 * 9 8 7 11 11 N 1.46500 * 109.44987 * 178.49837 * 10 9 8 12 12 C 1.46506 * 120.00115 * 60.05426 * 11 10 9 13 13 C 1.36938 * 119.99941 * 240.06068 * 11 10 9 14 14 H 1.07994 * 120.00043 * 19.97380 * 13 11 10 15 15 C 1.38813 * 119.99996 * 199.97399 * 13 11 10 16 16 N 1.31619 * 119.99758 * 14.96160 * 15 13 11 17 17 Si 1.86800 * 119.99966 * 194.96028 * 15 13 11 18 18 H 1.48503 * 109.46865 * 94.98454 * 17 15 13 19 19 H 1.48503 * 109.46943 * 214.98178 * 17 15 13 20 20 H 1.48494 * 109.47303 * 334.98148 * 17 15 13 21 21 C 1.53043 * 109.53516 * 298.50655 * 10 9 8 22 22 C 1.46920 * 120.63504 * 356.95113 * 7 5 3 23 23 N 1.46499 * 109.47014 * 296.44562 * 3 2 1 24 24 C 1.46766 * 124.34344 * 119.72301 * 23 3 2 25 25 C 1.54672 * 105.37684 * 162.85661 * 24 23 3 26 26 C 1.54624 * 101.68424 * 25.76529 * 25 24 23 27 27 C 1.34415 * 124.35011 * 300.02570 * 23 3 2 28 28 O 1.21276 * 124.94500 * 0.38120 * 27 23 3 29 29 H 1.09006 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47344 * 300.00109 * 1 2 3 31 31 H 1.08999 * 109.47376 * 59.99903 * 1 2 3 32 32 H 1.08995 * 109.47496 * 239.99965 * 2 1 3 33 33 H 1.09002 * 109.47288 * 119.99582 * 2 1 3 34 34 H 1.08997 * 109.58532 * 246.20437 * 8 7 5 35 35 H 1.08999 * 109.58664 * 6.62480 * 8 7 5 36 36 H 1.08998 * 109.63394 * 294.86573 * 9 8 7 37 37 H 1.08997 * 109.43015 * 174.72403 * 9 8 7 38 38 H 1.08994 * 109.46395 * 58.52508 * 10 9 8 39 39 H 1.09003 * 109.46598 * 94.58696 * 12 11 10 40 40 H 1.08997 * 109.46897 * 214.58308 * 12 11 10 41 41 H 1.08998 * 109.46999 * 334.58348 * 12 11 10 42 42 H 0.97007 * 119.99807 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.50127 * 301.41199 * 21 10 9 44 44 H 1.09003 * 109.52374 * 181.33178 * 21 10 9 45 45 H 1.09000 * 109.58863 * 353.37521 * 22 7 5 46 46 H 1.09007 * 109.58649 * 113.65327 * 22 7 5 47 47 H 1.09001 * 110.24775 * 281.98234 * 24 23 3 48 48 H 1.08993 * 110.24783 * 43.98733 * 24 23 3 49 49 H 1.09003 * 111.18861 * 267.58944 * 25 24 23 50 50 H 1.08996 * 110.85215 * 143.78912 * 25 24 23 51 51 H 1.09000 * 110.48781 * 216.30787 * 26 25 24 52 52 H 1.09003 * 110.59872 * 93.71893 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6255 1.9743 0.8565 5 6 3.5444 1.4434 0.0881 6 8 4.2067 1.8278 -0.8525 7 7 4.1537 1.0224 1.2141 8 6 5.6193 0.9486 1.2894 9 6 6.0856 1.7403 2.5206 10 6 5.3654 1.2112 3.7629 11 7 5.8333 1.9391 4.9451 12 6 5.6594 3.3914 5.0275 13 6 6.4335 1.2619 5.9729 14 1 6.8531 0.2817 5.8016 15 6 6.5025 1.8354 7.2352 16 7 5.7513 2.8760 7.5271 17 14 7.6613 1.1302 8.5194 18 1 8.9421 1.8815 8.4961 19 1 7.0419 1.2495 9.8638 20 1 7.9211 -0.3007 8.2193 21 6 3.8566 1.4126 3.6044 22 6 3.3651 0.6226 2.3875 23 7 1.6228 2.1079 -1.2367 24 6 0.7716 3.3025 -1.2876 25 6 0.9643 3.8831 -2.7082 26 6 1.3690 2.6238 -3.5090 27 6 1.9657 1.6995 -2.4705 28 8 2.6536 0.7313 -2.7156 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9284 -0.0925 1.3824 35 1 6.0537 1.3818 0.3885 36 1 5.8521 2.7965 2.3868 37 1 7.1616 1.6178 2.6441 38 1 5.5794 0.1491 3.8821 39 1 4.7390 3.6170 5.5663 40 1 6.5063 3.8293 5.5558 41 1 5.6034 3.8083 4.0220 42 1 5.7992 3.2766 8.4093 43 1 3.6441 2.4720 3.4605 44 1 3.3456 1.0574 4.4993 45 1 2.3117 0.8406 2.2114 46 1 3.4922 -0.4451 2.5666 47 1 -0.2714 3.0295 -1.1271 48 1 1.0924 4.0265 -0.5387 49 1 1.7598 4.6282 -2.7246 50 1 0.0318 4.3025 -3.0858 51 1 2.1109 2.8757 -4.2668 52 1 0.4943 2.1652 -3.9703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985795287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:16 Heat of formation + Delta-G solvation = -58.428419 kcal Electronic energy + Delta-G solvation = -31354.682759 eV Core-core repulsion = 27354.216994 eV Total energy + Delta-G solvation = -4000.465764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02687 -40.67629 -38.87904 -37.38253 -36.74791 -35.92968 -33.87913 -32.11817 -31.88641 -31.48039 -28.47566 -28.27483 -28.03630 -26.22916 -24.19097 -23.94634 -23.10623 -22.71130 -21.70579 -20.36901 -19.52604 -18.77219 -18.33644 -17.89103 -17.42795 -16.99699 -16.72632 -16.19976 -15.82795 -15.72045 -15.32312 -15.23042 -15.06966 -14.85173 -14.58756 -14.55473 -14.34916 -14.04832 -13.87801 -13.80393 -13.49773 -13.30900 -13.18436 -13.10515 -12.91857 -12.78884 -12.66305 -12.40371 -12.36996 -12.20294 -12.13128 -12.05551 -11.92596 -11.82075 -11.80446 -11.61622 -11.26497 -10.90925 -10.61986 -10.59194 -9.69514 -9.64166 -8.79047 -7.81003 -5.25445 1.46749 1.48939 1.51618 1.56825 1.57798 1.92125 2.21200 2.51674 3.30201 3.32841 3.53514 3.60735 3.65900 3.82637 3.84438 3.94749 4.07173 4.09906 4.14462 4.20000 4.28955 4.33915 4.37479 4.47851 4.55099 4.65342 4.69135 4.70393 4.76409 4.80060 4.81685 4.89099 4.89848 4.98871 5.05113 5.06699 5.09659 5.15134 5.24269 5.24747 5.36207 5.36486 5.47911 5.54585 5.61233 5.67274 5.72299 6.21895 6.33268 6.38177 7.09074 7.16890 7.31074 7.90198 8.33684 9.22504 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.002612 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.666134 B =10716.035573 C =10747.239276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.144 3.856 4 H 0.140 0.860 5 C 0.497 3.503 6 O -0.571 6.571 7 N -0.605 5.605 8 C 0.124 3.876 9 C -0.129 4.129 10 C 0.174 3.826 11 N -0.611 5.611 12 C 0.184 3.816 13 C -0.258 4.258 14 H 0.072 0.928 15 C -0.054 4.054 16 N -0.937 5.937 17 Si 0.964 3.036 18 H -0.292 1.292 19 H -0.296 1.296 20 H -0.267 1.267 21 C -0.134 4.134 22 C 0.113 3.887 23 N -0.608 5.608 24 C 0.096 3.904 25 C -0.120 4.120 26 C -0.150 4.150 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.005 0.995 40 H 0.011 0.989 41 H 0.021 0.979 42 H 0.246 0.754 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.125 0.875 51 H 0.094 0.906 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.024 -0.447 -18.119 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.037 3.963 4 H 0.157 0.843 5 C 0.285 3.715 6 O -0.450 6.450 7 N -0.339 5.339 8 C 0.000 4.000 9 C -0.170 4.170 10 C 0.067 3.933 11 N -0.333 5.333 12 C 0.039 3.961 13 C -0.388 4.388 14 H 0.090 0.910 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.793 3.207 18 H -0.220 1.220 19 H -0.222 1.222 20 H -0.192 1.192 21 C -0.174 4.174 22 C -0.009 4.009 23 N -0.342 5.342 24 C -0.026 4.026 25 C -0.158 4.158 26 C -0.190 4.190 27 C 0.298 3.702 28 O -0.453 6.453 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.023 0.977 40 H 0.030 0.970 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.143 0.857 51 H 0.112 0.888 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.305 -0.683 -18.518 24.683 hybrid contribution 1.350 -0.042 1.156 1.778 sum -14.955 -0.725 -17.362 22.927 Atomic orbital electron populations 1.21669 0.92263 1.02797 1.02780 1.21928 0.98921 0.92992 1.03396 1.20992 0.89353 0.96966 0.88997 0.84277 1.21522 0.91936 0.76377 0.81710 1.90675 1.67452 1.48392 1.38447 1.48193 1.07155 1.65057 1.13467 1.21554 0.79779 1.00641 0.97989 1.22328 1.00466 0.99343 0.94819 1.20489 0.92153 0.95297 0.85353 1.44193 1.68976 1.02978 1.17196 1.20398 0.98140 0.83273 0.94270 1.19582 1.28842 1.01793 0.88601 0.91017 1.25654 1.00881 0.99467 0.98867 1.70243 1.41019 1.26461 1.20743 0.85285 0.78489 0.78370 0.78528 1.21974 1.22247 1.19208 1.22300 0.97522 1.00047 0.97506 1.22039 0.96006 0.99806 0.83037 1.48154 1.50944 1.30522 1.04552 1.22504 0.95360 0.85339 0.99361 1.22652 1.04569 0.95742 0.92798 1.22359 1.03266 0.96246 0.97163 1.21584 0.78449 0.84795 0.85418 1.90659 1.39617 1.31029 1.83955 0.91672 0.90348 0.92834 0.93185 0.88872 0.90297 0.91049 0.93399 0.91757 0.91922 0.97689 0.96996 0.96099 0.94432 0.93080 0.91308 0.87106 0.89458 0.87809 0.89851 0.90682 0.85656 0.88803 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.79 71.98 0.70 -1.04 16 2 C -0.13 -2.54 4.97 30.59 0.15 -2.39 16 3 C 0.14 3.05 1.84 44.25 0.08 3.13 16 4 H 0.14 2.11 7.07 -2.39 -0.02 2.10 16 5 C 0.50 15.01 6.81 87.66 0.60 15.61 16 6 O -0.57 -22.48 13.95 14.53 0.20 -22.28 16 7 N -0.61 -16.94 2.97 -818.06 -2.43 -19.37 16 8 C 0.12 3.78 6.47 86.51 0.56 4.34 16 9 C -0.13 -4.46 5.34 30.82 0.16 -4.30 16 10 C 0.17 6.56 2.55 45.02 0.11 6.67 16 11 N -0.61 -29.58 2.81 -702.63 -1.98 -31.56 16 12 C 0.18 9.07 8.04 127.77 1.03 10.09 16 13 C -0.26 -13.82 9.62 84.03 0.81 -13.01 16 14 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 15 C -0.05 -2.97 5.06 84.86 0.43 -2.54 16 16 N -0.94 -54.67 10.65 21.65 0.23 -54.44 16 17 Si 0.96 44.70 29.58 68.60 2.03 46.73 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.13 -4.17 5.34 30.67 0.16 -4.00 16 22 C 0.11 2.58 4.97 86.36 0.43 3.01 16 23 N -0.61 -12.40 2.06 -797.83 -1.65 -14.05 16 24 C 0.10 1.04 7.31 86.90 0.64 1.67 16 25 C -0.12 -1.08 7.19 31.72 0.23 -0.85 16 26 C -0.15 -2.27 6.86 30.59 0.21 -2.06 16 27 C 0.51 13.18 6.67 87.90 0.59 13.76 16 28 O -0.57 -21.06 15.12 14.57 0.22 -20.84 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.70 7.71 -2.39 -0.02 0.68 16 32 H 0.05 1.33 6.66 -2.39 -0.02 1.31 16 33 H 0.09 1.54 5.96 -2.39 -0.01 1.53 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 2.42 7.00 -2.39 -0.02 2.40 16 36 H 0.05 1.76 6.72 -2.39 -0.02 1.75 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.37 7.84 -2.39 -0.02 2.35 16 39 H 0.00 0.26 7.44 -2.39 -0.02 0.24 16 40 H 0.01 0.62 7.15 -2.39 -0.02 0.60 16 41 H 0.02 0.90 6.46 -2.39 -0.02 0.89 16 42 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 43 H 0.05 1.69 7.72 -2.39 -0.02 1.67 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.11 1.81 4.98 -2.39 -0.01 1.80 16 46 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 51 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -79.79 393.80 4.42 -75.38 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.90 Total: 12.33 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 6.89 Total: 28.10 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -5.82 Total: -119.42 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: 0.42 Total: -43.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -79.79 4.42 -75.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985795287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.947 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds