Wall clock time and date at job start Tue Mar 31 2020 20:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 H 1.09000 * 109.47233 * 306.31786 * 3 2 1 5 5 C 1.50697 * 109.47389 * 186.31474 * 3 2 1 6 6 O 1.21274 * 120.00235 * 261.03218 * 5 3 2 7 7 N 1.34780 * 119.99822 * 81.03159 * 5 3 2 8 8 C 1.46931 * 120.63056 * 4.69770 * 7 5 3 9 9 C 1.53620 * 108.54505 * 126.36679 * 8 7 5 10 10 C 1.53047 * 109.24032 * 54.85862 * 9 8 7 11 11 N 1.46498 * 109.44772 * 178.49502 * 10 9 8 12 12 C 1.46500 * 119.99585 * 60.06530 * 11 10 9 13 13 C 1.36932 * 120.00309 * 240.05802 * 11 10 9 14 14 H 1.07999 * 119.99765 * 24.48287 * 13 11 10 15 15 C 1.38816 * 120.00190 * 204.48671 * 13 11 10 16 16 N 1.31618 * 119.99841 * 7.72550 * 15 13 11 17 17 Si 1.86803 * 119.99785 * 187.72540 * 15 13 11 18 18 H 1.48492 * 109.47020 * 59.99975 * 17 15 13 19 19 H 1.48495 * 109.46702 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46875 * 299.99702 * 17 15 13 21 21 C 1.53042 * 109.53356 * 298.51179 * 10 9 8 22 22 C 1.46923 * 120.63275 * 184.97512 * 7 5 3 23 23 N 1.46504 * 109.47118 * 66.31463 * 3 2 1 24 24 C 1.46761 * 124.34821 * 240.00164 * 23 3 2 25 25 C 1.54488 * 105.46915 * 197.01576 * 24 23 3 26 26 C 1.54620 * 101.76647 * 334.58524 * 25 24 23 27 27 C 1.34421 * 124.34748 * 59.70578 * 23 3 2 28 28 O 1.21284 * 124.94044 * 359.56323 * 27 23 3 29 29 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47138 * 300.00024 * 1 2 3 31 31 H 1.09000 * 109.47197 * 59.99998 * 1 2 3 32 32 H 1.08996 * 109.47371 * 240.00388 * 2 1 3 33 33 H 1.08997 * 109.47378 * 119.99494 * 2 1 3 34 34 H 1.09004 * 109.58437 * 246.20725 * 8 7 5 35 35 H 1.09000 * 109.58483 * 6.62126 * 8 7 5 36 36 H 1.08998 * 109.63362 * 294.86695 * 9 8 7 37 37 H 1.09006 * 109.43164 * 174.72038 * 9 8 7 38 38 H 1.09001 * 109.46026 * 58.52543 * 10 9 8 39 39 H 1.09000 * 109.47430 * 95.09805 * 12 11 10 40 40 H 1.09010 * 109.46990 * 215.09467 * 12 11 10 41 41 H 1.09001 * 109.47684 * 335.09216 * 12 11 10 42 42 H 0.96994 * 119.99524 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.49984 * 301.40901 * 21 10 9 44 44 H 1.08999 * 109.52173 * 181.33519 * 21 10 9 45 45 H 1.09000 * 109.58329 * 353.37422 * 22 7 5 46 46 H 1.09002 * 109.58438 * 113.65582 * 22 7 5 47 47 H 1.08996 * 110.24845 * 316.01356 * 24 23 3 48 48 H 1.08994 * 110.24904 * 78.02166 * 24 23 3 49 49 H 1.09003 * 110.96428 * 92.70458 * 25 24 23 50 50 H 1.08996 * 110.97035 * 216.46255 * 25 24 23 51 51 H 1.09004 * 110.48939 * 143.47267 * 26 25 24 52 52 H 1.08999 * 110.49049 * 265.98415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9880 -0.8280 5 6 3.5388 1.4455 -0.1563 6 8 4.2498 1.5722 0.8180 7 7 4.0891 1.3072 -1.3788 8 6 3.2432 1.2558 -2.5791 9 6 3.7371 2.3200 -3.5708 10 6 5.2274 2.1028 -3.8429 11 7 5.6950 3.0933 -4.8159 12 6 5.5962 4.5228 -4.5109 13 6 6.2244 2.6830 -6.0102 14 1 5.9565 1.7190 -6.4168 15 6 7.1055 3.5059 -6.6982 16 7 7.5506 4.6095 -6.1358 17 14 7.6593 3.0471 -8.4222 18 1 6.4764 2.9614 -9.3157 19 1 8.5920 4.0828 -8.9344 20 1 8.3494 1.7326 -8.3869 21 6 6.0136 2.2582 -2.5391 22 6 5.5459 1.1990 -1.5361 23 7 1.6796 2.0879 1.2649 24 6 0.8368 3.2845 1.3734 25 6 1.0891 3.8388 2.7931 26 6 1.5299 2.5673 3.5544 27 6 2.0738 1.6568 2.4756 28 8 2.7668 0.6814 2.6739 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.3139 0.2676 -3.0338 35 1 2.2083 1.4612 -2.3058 36 1 3.5853 3.3131 -3.1480 37 1 3.1804 2.2322 -4.5039 38 1 5.3814 1.1005 -4.2425 39 1 6.5412 4.8716 -4.0943 40 1 5.3762 5.0749 -5.4247 41 1 4.7978 4.6856 -3.7869 42 1 8.1666 5.1843 -6.6164 43 1 5.8405 3.2519 -2.1260 44 1 7.0773 2.1270 -2.7373 45 1 6.0307 1.3670 -0.5744 46 1 5.8008 0.2055 -1.9052 47 1 1.1281 4.0203 0.6239 48 1 -0.2133 3.0183 1.2536 49 1 1.8844 4.5842 2.7851 50 1 0.1745 4.2512 3.2191 51 1 2.3056 2.8076 4.2815 52 1 0.6762 2.1031 4.0482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985795291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:19 Heat of formation + Delta-G solvation = -59.172597 kcal Electronic energy + Delta-G solvation = -31346.821131 eV Core-core repulsion = 27346.323096 eV Total energy + Delta-G solvation = -4000.498034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99440 -40.65554 -38.87054 -37.36045 -36.69813 -35.88948 -33.88363 -32.15643 -31.91960 -31.44052 -28.46633 -28.25595 -28.02687 -26.20639 -24.19276 -23.89973 -23.13881 -22.69746 -21.68566 -20.37463 -19.44535 -18.77549 -18.38318 -17.87315 -17.39857 -17.01941 -16.64661 -16.22627 -15.80216 -15.70194 -15.31156 -15.18042 -15.11046 -14.82358 -14.59105 -14.54584 -14.30482 -14.06463 -13.88474 -13.79377 -13.46406 -13.32805 -13.15400 -13.06963 -12.89376 -12.74118 -12.63470 -12.39769 -12.35145 -12.25244 -12.13910 -12.08012 -11.95338 -11.82102 -11.80658 -11.60924 -11.25207 -10.92677 -10.61971 -10.53001 -9.67555 -9.61403 -8.73832 -7.79861 -5.30503 1.45862 1.47765 1.49408 1.55863 1.65320 1.93878 2.23121 2.51583 3.33239 3.33610 3.53214 3.62011 3.66386 3.80131 3.87229 3.94855 4.09474 4.09990 4.16440 4.20965 4.30446 4.35565 4.38235 4.48687 4.56146 4.67521 4.70561 4.70799 4.78058 4.81127 4.82317 4.89936 4.91715 4.98670 5.06212 5.08305 5.09905 5.16462 5.24737 5.26064 5.34590 5.37455 5.49404 5.56970 5.63115 5.67844 5.74465 6.23301 6.35699 6.40755 7.11824 7.17988 7.34484 7.90202 8.35277 9.22745 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002660 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.707626 B =10522.317806 C =10744.557615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.146 3.854 4 H 0.143 0.857 5 C 0.492 3.508 6 O -0.569 6.569 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.134 4.134 10 C 0.174 3.826 11 N -0.611 5.611 12 C 0.186 3.814 13 C -0.260 4.260 14 H 0.075 0.925 15 C -0.056 4.056 16 N -0.943 5.943 17 Si 0.969 3.031 18 H -0.275 1.275 19 H -0.299 1.299 20 H -0.277 1.277 21 C -0.128 4.128 22 C 0.125 3.875 23 N -0.612 5.612 24 C 0.096 3.904 25 C -0.121 4.121 26 C -0.151 4.151 27 C 0.505 3.495 28 O -0.567 6.567 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.063 0.937 39 H -0.006 1.006 40 H 0.015 0.985 41 H 0.025 0.975 42 H 0.246 0.754 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.126 0.874 51 H 0.092 0.908 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.254 -4.347 14.126 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.039 3.961 4 H 0.160 0.840 5 C 0.280 3.720 6 O -0.447 6.447 7 N -0.339 5.339 8 C -0.010 4.010 9 C -0.174 4.174 10 C 0.067 3.933 11 N -0.334 5.334 12 C 0.041 3.959 13 C -0.390 4.390 14 H 0.093 0.907 15 C -0.250 4.250 16 N -0.590 5.590 17 Si 0.798 3.202 18 H -0.201 1.201 19 H -0.225 1.225 20 H -0.203 1.203 21 C -0.169 4.169 22 C 0.002 3.998 23 N -0.346 5.346 24 C -0.025 4.025 25 C -0.159 4.159 26 C -0.191 4.191 27 C 0.294 3.706 28 O -0.445 6.445 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.012 0.988 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.123 0.877 49 H 0.092 0.908 50 H 0.144 0.856 51 H 0.110 0.890 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.401 -4.678 14.596 26.324 hybrid contribution 1.636 0.189 -0.959 1.905 sum -19.765 -4.489 13.637 24.429 Atomic orbital electron populations 1.21671 0.92020 1.02792 1.02921 1.21803 0.98922 0.92954 1.03100 1.21066 0.89566 0.97328 0.88150 0.83965 1.21641 0.92325 0.75684 0.82347 1.90718 1.64326 1.50230 1.39455 1.48249 1.07234 1.71834 1.06625 1.22146 0.94821 1.00212 0.83801 1.22368 0.96727 0.98839 0.99470 1.20528 0.92535 0.92712 0.87535 1.44168 1.71845 1.01393 1.15947 1.20389 0.95206 0.84201 0.96126 1.19577 1.19364 1.03185 0.96908 0.90715 1.25875 0.98072 0.98230 1.02846 1.70237 1.35499 1.15390 1.37850 0.85308 0.77750 0.76965 0.80207 1.20073 1.22544 1.20265 1.22261 0.99955 0.97904 0.96757 1.21413 0.80476 0.99023 0.98935 1.48211 1.51318 1.30433 1.04631 1.22466 0.95587 0.85366 0.99101 1.22627 1.04253 0.95667 0.93336 1.22357 1.03501 0.96415 0.96841 1.21594 0.78287 0.84883 0.85811 1.90676 1.38613 1.30324 1.84915 0.91766 0.92816 0.90039 0.89316 0.93402 0.89103 0.86705 0.92744 0.89900 0.91830 0.98773 0.96649 0.95697 0.94507 0.94204 0.93294 0.91695 0.90247 0.89681 0.87716 0.90825 0.85620 0.88950 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.81 71.98 0.71 -0.87 16 2 C -0.13 -2.39 5.27 30.59 0.16 -2.23 16 3 C 0.15 2.97 1.82 44.24 0.08 3.05 16 4 H 0.14 1.89 6.19 -2.39 -0.01 1.88 16 5 C 0.49 14.88 6.85 87.66 0.60 15.48 16 6 O -0.57 -23.17 13.53 17.39 0.24 -22.93 16 7 N -0.61 -16.79 2.97 -818.08 -2.43 -19.22 16 8 C 0.11 2.31 5.87 86.51 0.51 2.81 16 9 C -0.13 -3.78 5.34 30.82 0.16 -3.62 16 10 C 0.17 6.55 2.55 45.02 0.11 6.67 16 11 N -0.61 -29.66 2.81 -702.60 -1.97 -31.63 16 12 C 0.19 9.21 8.01 127.77 1.02 10.24 16 13 C -0.26 -13.91 9.59 84.04 0.81 -13.10 16 14 H 0.08 3.80 7.81 -2.91 -0.02 3.78 16 15 C -0.06 -3.09 5.20 84.86 0.44 -2.65 16 16 N -0.94 -56.16 10.52 21.65 0.23 -55.93 16 17 Si 0.97 44.66 29.56 68.60 2.03 46.68 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.13 -4.83 5.34 30.67 0.16 -4.67 16 22 C 0.13 4.04 6.44 86.36 0.56 4.59 16 23 N -0.61 -12.33 2.27 -798.19 -1.81 -14.14 16 24 C 0.10 1.00 7.30 86.84 0.63 1.63 16 25 C -0.12 -1.11 7.18 31.65 0.23 -0.88 16 26 C -0.15 -2.34 6.86 30.59 0.21 -2.13 16 27 C 0.50 13.28 6.74 87.90 0.59 13.87 16 28 O -0.57 -21.26 14.67 17.35 0.25 -21.00 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.64 7.79 -2.39 -0.02 0.62 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.43 7.69 -2.39 -0.02 1.42 16 33 H 0.05 1.28 6.57 -2.39 -0.02 1.27 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.12 1.51 5.42 -2.39 -0.01 1.50 16 36 H 0.05 1.63 6.72 -2.39 -0.02 1.62 16 37 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.06 2.39 7.87 -2.39 -0.02 2.37 16 39 H -0.01 -0.34 7.33 -2.39 -0.02 -0.36 16 40 H 0.01 0.80 7.30 -2.38 -0.02 0.79 16 41 H 0.02 1.06 6.47 -2.39 -0.02 1.04 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.04 1.62 7.72 -2.39 -0.02 1.60 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.37 7.00 -2.39 -0.02 2.35 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 49 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 52 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -82.81 395.71 4.41 -78.39 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.89 Total: 11.59 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 6.99 Total: 28.19 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -5.99 Total: -120.92 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: 0.49 Total: -43.93 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -82.81 4.41 -78.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985795291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.220 kcal (2) G-P(sol) polarization free energy of solvation -82.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds