Wall clock time and date at job start Tue Mar 31 2020 19:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 H 1.08995 * 109.87195 * 55.52326 * 3 2 1 5 5 C 1.54316 * 109.88359 * 294.50720 * 3 2 1 6 6 C 1.55156 * 102.94600 * 218.38893 * 5 3 2 7 7 C 1.54911 * 101.58028 * 35.50514 * 6 5 3 8 8 N 1.47027 * 109.88265 * 176.69870 * 3 2 1 9 9 C 1.34774 * 125.65037 * 298.33834 * 8 3 2 10 10 O 1.21349 * 119.99761 * 4.61118 * 9 8 3 11 11 C 1.49444 * 120.00082 * 184.60787 * 9 8 3 12 12 O 1.21349 * 120.00157 * 0.02562 * 11 9 8 13 13 N 1.34774 * 120.00082 * 179.97438 * 11 9 8 14 14 C 1.47424 * 125.64952 * 359.69369 * 13 11 9 15 15 C 1.55130 * 104.72695 * 155.81846 * 14 13 11 16 16 H 1.08998 * 110.93982 * 155.28935 * 15 14 13 17 17 N 1.46501 * 111.19097 * 279.19551 * 15 14 13 18 18 C 1.36941 * 119.99774 * 267.18729 * 17 15 14 19 19 H 1.08004 * 119.99823 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00193 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00524 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99942 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47002 * 89.99731 * 22 20 18 24 24 H 1.48492 * 109.47150 * 210.00261 * 22 20 18 25 25 H 1.48496 * 109.47011 * 330.00094 * 22 20 18 26 26 C 1.55161 * 101.48347 * 37.29335 * 15 14 13 27 27 C 1.53001 * 110.71984 * 205.97275 * 26 15 14 28 28 C 1.52996 * 110.71753 * 82.69929 * 26 15 14 29 29 C 1.47025 * 125.64956 * 180.02562 * 13 11 9 30 30 H 1.08998 * 109.46765 * 185.02128 * 1 2 3 31 31 H 1.08999 * 109.47241 * 305.01937 * 1 2 3 32 32 H 1.08996 * 109.47110 * 65.02759 * 1 2 3 33 33 H 1.08995 * 109.47605 * 240.00347 * 2 1 3 34 34 H 1.09003 * 109.47432 * 119.99633 * 2 1 3 35 35 H 1.09002 * 110.72244 * 336.75816 * 5 3 2 36 36 H 1.09000 * 110.71983 * 100.02255 * 5 3 2 37 37 H 1.09003 * 111.00569 * 153.57228 * 6 5 3 38 38 H 1.08991 * 111.00699 * 277.42960 * 6 5 3 39 39 H 1.09000 * 110.36748 * 81.82682 * 7 6 5 40 40 H 1.08998 * 110.36853 * 204.04516 * 7 6 5 41 41 H 1.08998 * 110.36506 * 274.74852 * 14 13 11 42 42 H 1.08998 * 110.36580 * 37.06920 * 14 13 11 43 43 H 0.97002 * 120.00498 * 87.18223 * 17 15 14 44 44 H 0.97002 * 120.00676 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46907 * 174.97933 * 27 26 15 46 46 H 1.09004 * 109.47020 * 294.97884 * 27 26 15 47 47 H 1.08994 * 109.46844 * 54.97733 * 27 26 15 48 48 H 1.09002 * 109.47237 * 305.02161 * 28 26 15 49 49 H 1.08998 * 109.47376 * 65.02107 * 28 26 15 50 50 H 1.09005 * 109.46988 * 185.02115 * 28 26 15 51 51 H 1.08998 * 109.88563 * 300.44404 * 29 13 11 52 52 H 1.09004 * 109.88077 * 61.60521 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6163 1.9853 0.8450 5 6 1.6473 2.1380 -1.3204 6 6 2.8935 3.0051 -1.6406 7 6 4.0422 2.0972 -1.1346 8 7 3.5080 1.4540 0.0796 9 6 4.2434 0.9588 1.0947 10 8 3.7000 0.3748 2.0091 11 6 5.7282 1.1290 1.0940 12 8 6.2715 1.7134 0.1798 13 7 6.4636 0.6343 2.1093 14 6 5.9350 -0.0869 3.2814 15 6 7.1227 -0.9502 3.7819 16 1 7.0172 -1.1808 4.8419 17 7 7.2562 -2.1764 2.9913 18 6 6.6397 -3.3275 3.4039 19 1 6.0555 -3.3315 4.3123 20 6 6.7666 -4.4895 2.6553 21 7 6.1746 -5.5960 3.0520 22 14 7.7777 -4.4828 1.0845 23 1 9.1867 -4.8287 1.4013 24 1 7.2242 -5.4816 0.1353 25 1 7.7260 -3.1327 0.4683 26 6 8.3223 0.0028 3.5366 27 6 9.6143 -0.7927 3.3400 28 6 8.4676 0.9978 4.6897 29 6 7.9253 0.7305 2.2349 30 1 -0.3633 -1.0237 0.0899 31 1 -0.3634 0.5897 0.8416 32 1 -0.3633 0.4338 -0.9316 33 1 1.8933 -0.5137 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4761 1.4034 -2.1072 36 1 0.7671 2.7653 -1.1791 37 1 2.9802 3.1839 -2.7123 38 1 2.8673 3.9453 -1.0900 39 1 4.2901 1.3457 -1.8843 40 1 4.9207 2.6957 -0.8936 41 1 5.6242 0.6183 4.0523 42 1 5.0999 -0.7239 2.9899 43 1 7.7811 -2.1730 2.1757 44 1 6.2635 -6.4081 2.5290 45 1 10.4248 -0.1112 3.0815 46 1 9.8615 -1.3180 4.2625 47 1 9.4770 -1.5156 2.5359 48 1 7.5268 1.5297 4.8315 49 1 8.7224 0.4606 5.6032 50 1 9.2571 1.7121 4.4560 51 1 8.4032 0.2500 1.3812 52 1 8.2246 1.7773 2.2890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996494460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:49 Heat of formation + Delta-G solvation = -44.633696 kcal Electronic energy + Delta-G solvation = -31601.770662 eV Core-core repulsion = 27601.903081 eV Total energy + Delta-G solvation = -3999.867580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85103 -39.62198 -37.99628 -37.47820 -34.08592 -33.56358 -33.24952 -31.63529 -31.05901 -28.37464 -28.02561 -27.14646 -26.84259 -24.92944 -23.64536 -22.82564 -22.05626 -21.33451 -20.37960 -19.19273 -18.77903 -17.61561 -17.02947 -16.79321 -16.23710 -16.05178 -15.11822 -14.97062 -14.67807 -14.40399 -14.28137 -13.87788 -13.86244 -13.56938 -13.47728 -13.18745 -12.96816 -12.79623 -12.58006 -12.46220 -12.43069 -12.20796 -12.16703 -11.79407 -11.67076 -11.60451 -11.57265 -11.34855 -11.29709 -11.03033 -10.94558 -10.85943 -10.61217 -10.56255 -10.44218 -10.24071 -9.93407 -9.58444 -9.27477 -8.95667 -8.74495 -8.39480 -7.30643 -5.80088 -3.16200 1.66342 2.36436 3.34492 3.37987 3.42589 3.43063 3.53517 4.25125 4.38617 4.53021 4.55894 4.63647 4.74077 4.96127 4.98105 5.00746 5.07407 5.14801 5.27377 5.29672 5.34132 5.49206 5.51438 5.55046 5.57516 5.66930 5.68350 5.71297 5.77803 5.80961 5.85108 5.89531 5.96469 5.96729 6.08176 6.09264 6.11432 6.15385 6.15787 6.22220 6.29753 6.40056 6.44948 6.55412 6.68536 6.75286 7.26456 7.56108 7.83061 7.95048 8.22227 8.38687 9.15622 9.88145 10.06578 11.37873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.004213 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.571841 B = 6644.895870 C = 8016.249947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.136 4.136 7 C 0.093 3.907 8 N -0.594 5.594 9 C 0.524 3.476 10 O -0.502 6.502 11 C 0.520 3.480 12 O -0.537 6.537 13 N -0.572 5.572 14 C 0.066 3.934 15 C 0.182 3.818 16 H 0.086 0.914 17 N -0.733 5.733 18 C -0.245 4.245 19 H 0.094 0.906 20 C 0.011 3.989 21 N -0.930 5.930 22 Si 0.876 3.124 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.279 1.279 26 C -0.094 4.094 27 C -0.127 4.127 28 C -0.131 4.131 29 C 0.118 3.882 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.068 0.932 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 19.140 -5.817 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.036 3.964 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.174 4.174 7 C -0.029 4.029 8 N -0.329 5.329 9 C 0.307 3.693 10 O -0.376 6.376 11 C 0.303 3.697 12 O -0.416 6.416 13 N -0.303 5.303 14 C -0.059 4.059 15 C 0.070 3.930 16 H 0.103 0.897 17 N -0.374 5.374 18 C -0.375 4.375 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.577 5.577 22 Si 0.707 3.293 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.095 4.095 27 C -0.184 4.184 28 C -0.189 4.189 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.087 0.913 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.711 18.891 -5.651 20.273 hybrid contribution 0.606 -0.193 -1.337 1.481 sum -4.105 18.698 -6.989 20.379 Atomic orbital electron populations 1.21696 0.95053 1.02084 1.01472 1.21948 0.96200 0.95871 1.03867 1.21733 0.79224 0.97051 0.98403 0.90423 1.22746 0.98289 0.99050 0.96437 1.22841 0.94385 0.98331 1.01835 1.22688 0.97973 0.96240 0.86014 1.48294 1.06837 1.58125 1.19640 1.19759 0.87760 0.79780 0.82008 1.90756 1.72699 1.39081 1.35053 1.19602 0.87514 0.80416 0.82198 1.90638 1.72984 1.42817 1.35204 1.48201 1.07839 1.52857 1.21445 1.23803 1.01014 0.95184 0.85907 1.21443 0.89763 0.85525 0.96305 0.89664 1.42721 1.61166 1.06493 1.27036 1.19069 1.24979 0.85748 1.07688 0.88863 1.24613 0.99986 0.95635 0.98256 1.69684 1.47510 1.00387 1.40092 0.86681 0.80691 0.77097 0.84869 1.20851 1.21661 1.20522 1.21996 0.97449 0.96137 0.93963 1.21644 0.94594 0.99156 1.03053 1.21752 1.01524 0.98132 0.97464 1.22148 0.79603 1.00297 0.98326 0.92341 0.92643 0.92830 0.91801 0.89826 0.90246 0.89982 0.89768 0.90640 0.91322 0.87671 0.91876 0.87433 0.80355 0.93012 0.93297 0.91597 0.92071 0.92530 0.91880 0.92676 0.91319 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.66 37.15 0.36 -1.05 16 2 C -0.14 -1.76 5.38 -26.73 -0.14 -1.90 16 3 C 0.14 1.61 2.94 -66.95 -0.20 1.41 16 4 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 5 C -0.13 -1.04 5.61 -24.90 -0.14 -1.18 16 6 C -0.14 -1.11 7.09 -24.58 -0.17 -1.29 16 7 C 0.09 1.10 6.23 -2.53 -0.02 1.09 16 8 N -0.59 -8.41 3.06 -163.52 -0.50 -8.91 16 9 C 0.52 9.10 7.70 -11.59 -0.09 9.01 16 10 O -0.50 -9.69 12.60 5.50 0.07 -9.63 16 11 C 0.52 9.35 7.88 -11.59 -0.09 9.26 16 12 O -0.54 -9.83 14.04 5.50 0.08 -9.75 16 13 N -0.57 -10.06 3.32 -170.89 -0.57 -10.63 16 14 C 0.07 1.19 5.46 -2.41 -0.01 1.18 16 15 C 0.18 3.33 2.96 -65.66 -0.19 3.14 16 16 H 0.09 1.55 7.99 -51.93 -0.41 1.14 16 17 N -0.73 -16.76 4.37 -51.23 -0.22 -16.99 16 18 C -0.25 -6.73 10.44 -15.06 -0.16 -6.89 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 20 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 21 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 22 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 26 C -0.09 -1.38 0.80 -152.67 -0.12 -1.50 16 27 C -0.13 -1.85 8.16 37.16 0.30 -1.55 16 28 C -0.13 -1.54 8.43 37.16 0.31 -1.23 16 29 C 0.12 1.85 6.04 -3.06 -0.02 1.83 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.42 7.58 -51.93 -0.39 0.03 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.08 1.33 6.61 -51.93 -0.34 0.99 16 35 H 0.08 0.62 7.79 -51.93 -0.40 0.21 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.11 1.38 5.89 -51.93 -0.31 1.07 16 41 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 42 H 0.11 2.31 6.14 -51.93 -0.32 2.00 16 43 H 0.36 8.40 4.19 -40.82 -0.17 8.23 16 44 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 48 H 0.06 0.66 7.42 -51.93 -0.39 0.27 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 1.14 7.82 -51.93 -0.41 0.74 16 52 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -32.43 397.43 -8.51 -40.95 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.94 Total: 9.06 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.48 Total: 10.55 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.52 Total: -64.72 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.15 Total: -19.38 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.43 -8.51 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.686 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds