Wall clock time and date at job start Tue Mar 31 2020 19:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 H 1.08995 * 109.87195 * 55.52326 * 3 2 1 5 5 C 1.54316 * 109.88359 * 294.50720 * 3 2 1 6 6 C 1.55156 * 102.94600 * 218.38893 * 5 3 2 7 7 C 1.54911 * 101.58028 * 35.50514 * 6 5 3 8 8 N 1.47027 * 109.88265 * 176.69870 * 3 2 1 9 9 C 1.34774 * 125.65037 * 298.33834 * 8 3 2 10 10 O 1.21349 * 119.99761 * 4.61118 * 9 8 3 11 11 C 1.49444 * 120.00082 * 184.60787 * 9 8 3 12 12 O 1.21349 * 120.00157 * 0.02562 * 11 9 8 13 13 N 1.34774 * 120.00082 * 179.97438 * 11 9 8 14 14 C 1.47424 * 125.64952 * 359.69369 * 13 11 9 15 15 C 1.55130 * 104.72695 * 155.81846 * 14 13 11 16 16 H 1.08998 * 110.93982 * 155.28935 * 15 14 13 17 17 N 1.46501 * 111.19097 * 279.19551 * 15 14 13 18 18 C 1.36941 * 119.99774 * 267.18729 * 17 15 14 19 19 H 1.08004 * 119.99823 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00193 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00524 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99942 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47002 * 89.99731 * 22 20 18 24 24 H 1.48492 * 109.47150 * 210.00261 * 22 20 18 25 25 H 1.48496 * 109.47011 * 330.00094 * 22 20 18 26 26 C 1.55161 * 101.48347 * 37.29335 * 15 14 13 27 27 C 1.53001 * 110.71984 * 205.97275 * 26 15 14 28 28 C 1.52996 * 110.71753 * 82.69929 * 26 15 14 29 29 C 1.47025 * 125.64956 * 180.02562 * 13 11 9 30 30 H 1.08998 * 109.46765 * 185.02128 * 1 2 3 31 31 H 1.08999 * 109.47241 * 305.01937 * 1 2 3 32 32 H 1.08996 * 109.47110 * 65.02759 * 1 2 3 33 33 H 1.08995 * 109.47605 * 240.00347 * 2 1 3 34 34 H 1.09003 * 109.47432 * 119.99633 * 2 1 3 35 35 H 1.09002 * 110.72244 * 336.75816 * 5 3 2 36 36 H 1.09000 * 110.71983 * 100.02255 * 5 3 2 37 37 H 1.09003 * 111.00569 * 153.57228 * 6 5 3 38 38 H 1.08991 * 111.00699 * 277.42960 * 6 5 3 39 39 H 1.09000 * 110.36748 * 81.82682 * 7 6 5 40 40 H 1.08998 * 110.36853 * 204.04516 * 7 6 5 41 41 H 1.08998 * 110.36506 * 274.74852 * 14 13 11 42 42 H 1.08998 * 110.36580 * 37.06920 * 14 13 11 43 43 H 0.97002 * 120.00498 * 87.18223 * 17 15 14 44 44 H 0.97002 * 120.00676 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46907 * 174.97933 * 27 26 15 46 46 H 1.09004 * 109.47020 * 294.97884 * 27 26 15 47 47 H 1.08994 * 109.46844 * 54.97733 * 27 26 15 48 48 H 1.09002 * 109.47237 * 305.02161 * 28 26 15 49 49 H 1.08998 * 109.47376 * 65.02107 * 28 26 15 50 50 H 1.09005 * 109.46988 * 185.02115 * 28 26 15 51 51 H 1.08998 * 109.88563 * 300.44404 * 29 13 11 52 52 H 1.09004 * 109.88077 * 61.60521 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6163 1.9853 0.8450 5 6 1.6473 2.1380 -1.3204 6 6 2.8935 3.0051 -1.6406 7 6 4.0422 2.0972 -1.1346 8 7 3.5080 1.4540 0.0796 9 6 4.2434 0.9588 1.0947 10 8 3.7000 0.3748 2.0091 11 6 5.7282 1.1290 1.0940 12 8 6.2715 1.7134 0.1798 13 7 6.4636 0.6343 2.1093 14 6 5.9350 -0.0869 3.2814 15 6 7.1227 -0.9502 3.7819 16 1 7.0172 -1.1808 4.8419 17 7 7.2562 -2.1764 2.9913 18 6 6.6397 -3.3275 3.4039 19 1 6.0555 -3.3315 4.3123 20 6 6.7666 -4.4895 2.6553 21 7 6.1746 -5.5960 3.0520 22 14 7.7777 -4.4828 1.0845 23 1 9.1867 -4.8287 1.4013 24 1 7.2242 -5.4816 0.1353 25 1 7.7260 -3.1327 0.4683 26 6 8.3223 0.0028 3.5366 27 6 9.6143 -0.7927 3.3400 28 6 8.4676 0.9978 4.6897 29 6 7.9253 0.7305 2.2349 30 1 -0.3633 -1.0237 0.0899 31 1 -0.3634 0.5897 0.8416 32 1 -0.3633 0.4338 -0.9316 33 1 1.8933 -0.5137 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4761 1.4034 -2.1072 36 1 0.7671 2.7653 -1.1791 37 1 2.9802 3.1839 -2.7123 38 1 2.8673 3.9453 -1.0900 39 1 4.2901 1.3457 -1.8843 40 1 4.9207 2.6957 -0.8936 41 1 5.6242 0.6183 4.0523 42 1 5.0999 -0.7239 2.9899 43 1 7.7811 -2.1730 2.1757 44 1 6.2635 -6.4081 2.5290 45 1 10.4248 -0.1112 3.0815 46 1 9.8615 -1.3180 4.2625 47 1 9.4770 -1.5156 2.5359 48 1 7.5268 1.5297 4.8315 49 1 8.7224 0.4606 5.6032 50 1 9.2571 1.7121 4.4560 51 1 8.4032 0.2500 1.3812 52 1 8.2246 1.7773 2.2890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996494460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:48 Heat of formation + Delta-G solvation = -65.559709 kcal Electronic energy + Delta-G solvation = -31602.678082 eV Core-core repulsion = 27601.903081 eV Total energy + Delta-G solvation = -4000.775000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.13892 -40.85293 -39.30347 -38.73927 -35.90116 -34.76541 -34.43193 -33.07204 -32.60225 -29.90602 -28.93375 -28.34008 -28.06520 -26.12899 -25.36797 -23.95021 -23.08424 -22.76584 -21.40870 -20.67525 -20.07264 -19.43663 -18.29369 -18.05787 -17.50331 -17.42505 -16.64876 -16.31914 -16.08284 -15.71032 -15.57742 -15.16334 -14.96795 -14.87526 -14.55307 -14.50124 -14.34039 -14.08839 -13.96334 -13.83803 -13.59282 -13.42731 -13.18430 -13.02306 -12.94039 -12.84198 -12.72468 -12.66449 -12.63618 -12.31840 -12.17733 -12.01261 -11.93684 -11.78258 -11.62882 -11.61895 -11.47290 -11.34640 -11.06307 -10.49128 -10.01823 -9.75088 -9.29496 -8.05544 -5.37700 0.28742 1.13835 1.29161 1.31639 1.37181 2.05482 2.30402 2.41783 3.05395 3.22998 3.40023 3.53649 3.57373 3.65481 3.75120 3.82074 3.94565 4.14050 4.16902 4.22368 4.30427 4.39278 4.43747 4.50789 4.52382 4.58870 4.68541 4.71797 4.82058 4.85492 4.89329 4.90267 4.93839 4.96535 5.01537 5.06815 5.08876 5.09912 5.11826 5.19909 5.22330 5.26965 5.32715 5.38177 5.43596 5.51423 5.75432 6.05696 6.16912 6.18966 6.50108 6.87758 7.03504 7.79178 7.96750 9.16005 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.004213 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.571841 B = 6644.895870 C = 8016.249947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.130 3.870 4 H 0.077 0.923 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.085 3.915 8 N -0.590 5.590 9 C 0.512 3.488 10 O -0.534 6.534 11 C 0.513 3.487 12 O -0.542 6.542 13 N -0.576 5.576 14 C 0.079 3.921 15 C 0.170 3.830 16 H 0.086 0.914 17 N -0.735 5.735 18 C -0.222 4.222 19 H 0.065 0.935 20 C -0.055 4.055 21 N -0.979 5.979 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.298 1.298 25 H -0.270 1.270 26 C -0.079 4.079 27 C -0.126 4.126 28 C -0.126 4.126 29 C 0.115 3.885 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.363 0.637 44 H 0.257 0.743 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.058 0.942 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 22.427 -7.300 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.028 3.972 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.037 4.037 8 N -0.324 5.324 9 C 0.295 3.705 10 O -0.412 6.412 11 C 0.296 3.704 12 O -0.422 6.422 13 N -0.308 5.308 14 C -0.046 4.046 15 C 0.060 3.940 16 H 0.104 0.896 17 N -0.377 5.377 18 C -0.353 4.353 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.630 5.630 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.225 1.225 25 H -0.196 1.196 26 C -0.080 4.080 27 C -0.184 4.184 28 C -0.183 4.183 29 C -0.006 4.006 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.197 0.803 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.076 0.924 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.168 22.260 -7.154 23.750 hybrid contribution 0.390 -1.138 -0.831 1.462 sum -3.778 21.123 -7.985 22.895 Atomic orbital electron populations 1.21657 0.92606 1.02191 1.03134 1.21892 0.98338 0.96153 1.01324 1.22016 0.77618 0.96741 1.00793 0.90472 1.22776 0.99253 0.99216 0.94159 1.22839 0.92161 0.97585 1.03407 1.22864 0.99308 0.96584 0.84935 1.48520 1.08101 1.56505 1.19227 1.19838 0.87832 0.80160 0.82691 1.90745 1.73087 1.40777 1.36542 1.19829 0.87968 0.80411 0.82201 1.90627 1.73241 1.43135 1.35218 1.48304 1.08763 1.52570 1.21180 1.23501 0.99366 0.95113 0.86621 1.21713 0.92100 0.84646 0.95582 0.89608 1.42689 1.60740 1.06713 1.27548 1.19046 1.23082 0.87190 1.06022 0.91738 1.25301 1.02099 0.95479 1.01776 1.69848 1.50149 1.01142 1.41849 0.85645 0.79620 0.77032 0.80842 1.19394 1.22526 1.19600 1.21958 0.95614 0.95582 0.94878 1.21646 0.95404 0.99241 1.02084 1.21740 1.02656 0.97713 0.96197 1.22329 0.78255 1.01761 0.98260 0.92895 0.92171 0.90065 0.92455 0.94250 0.89381 0.87099 0.87104 0.89735 0.91679 0.88970 0.89718 0.91322 0.80328 0.93428 0.90099 0.91667 0.94657 0.92312 0.91110 0.90115 0.92393 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.66 71.98 0.70 -1.84 16 2 C -0.14 -3.52 5.38 30.59 0.16 -3.36 16 3 C 0.13 2.91 2.94 45.34 0.13 3.04 16 4 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.12 -1.52 5.61 31.78 0.18 -1.34 16 6 C -0.12 -1.60 7.09 31.99 0.23 -1.37 16 7 C 0.08 1.90 6.23 86.85 0.54 2.44 16 8 N -0.59 -16.69 3.06 -789.61 -2.42 -19.11 16 9 C 0.51 18.34 7.70 87.27 0.67 19.01 16 10 O -0.53 -21.85 12.60 -3.24 -0.04 -21.89 16 11 C 0.51 18.56 7.88 87.27 0.69 19.25 16 12 O -0.54 -19.61 14.04 -3.24 -0.05 -19.65 16 13 N -0.58 -20.12 3.32 -812.93 -2.70 -22.83 16 14 C 0.08 2.90 5.46 86.93 0.47 3.37 16 15 C 0.17 6.21 2.96 46.46 0.14 6.35 16 16 H 0.09 3.14 7.99 -2.39 -0.02 3.12 16 17 N -0.74 -34.12 4.37 -316.00 -1.38 -35.50 16 18 C -0.22 -12.64 10.44 84.03 0.88 -11.76 16 19 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 20 C -0.05 -3.27 5.50 84.86 0.47 -2.81 16 21 N -0.98 -63.46 13.97 21.65 0.30 -63.16 16 22 Si 0.94 47.13 27.74 68.60 1.90 49.04 16 23 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 25 H -0.27 -12.95 6.52 99.48 0.65 -12.31 16 26 C -0.08 -2.17 0.80 -50.99 -0.04 -2.21 16 27 C -0.13 -3.40 8.16 71.98 0.59 -2.82 16 28 C -0.13 -2.53 8.43 71.98 0.61 -1.92 16 29 C 0.12 3.39 6.04 86.73 0.52 3.92 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.05 7.58 -2.39 -0.02 1.04 16 33 H 0.06 1.48 8.06 -2.39 -0.02 1.47 16 34 H 0.04 1.34 6.61 -2.39 -0.02 1.33 16 35 H 0.09 1.05 7.79 -2.39 -0.02 1.03 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 2.33 5.89 -2.39 -0.01 2.32 16 41 H 0.08 2.72 7.69 -2.39 -0.02 2.70 16 42 H 0.07 3.11 6.14 -2.39 -0.01 3.10 16 43 H 0.36 16.82 4.19 -92.71 -0.39 16.43 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.03 1.13 6.34 -2.39 -0.02 1.12 16 48 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 49 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.06 1.84 7.82 -2.39 -0.02 1.82 16 52 H 0.09 2.30 7.84 -2.38 -0.02 2.28 16 Total: -1.00 -75.02 397.43 3.00 -72.02 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.46 Total: 33.13 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 6.93 Total: 27.95 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -6.20 Total: -140.59 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.09 Total: -41.55 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.04 kcal Total: -75.02 3.00 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.456 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds