Wall clock time and date at job start Tue Mar 31 2020 19:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47336 * 2 1 4 4 H 1.09008 * 109.86932 * 55.52547 * 3 2 1 5 5 C 1.54318 * 109.88050 * 294.51059 * 3 2 1 6 6 C 1.55162 * 102.93969 * 218.23023 * 5 3 2 7 7 C 1.54909 * 101.58045 * 35.50214 * 6 5 3 8 8 N 1.47285 * 110.00148 * 176.58011 * 3 2 1 9 9 C 1.34774 * 125.79729 * 298.43124 * 8 3 2 10 10 O 1.21348 * 119.99966 * 4.63677 * 9 8 3 11 11 C 1.49452 * 119.99834 * 184.63652 * 9 8 3 12 12 O 1.21346 * 120.00174 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99654 * 180.02562 * 11 9 8 14 14 C 1.47021 * 125.64953 * 0.02658 * 13 11 9 15 15 C 1.54319 * 107.27099 * 181.02297 * 14 13 11 16 16 H 1.09000 * 110.72061 * 263.83337 * 15 14 13 17 17 N 1.46500 * 110.72259 * 140.55249 * 15 14 13 18 18 C 1.36938 * 119.99596 * 86.45474 * 17 15 14 19 19 H 1.08002 * 120.00233 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00000 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46645 * 60.00119 * 22 20 18 24 24 H 1.48499 * 109.46754 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46871 * 299.99894 * 22 20 18 26 26 C 1.55165 * 102.94369 * 22.19262 * 15 14 13 27 27 C 1.52994 * 111.00534 * 82.57199 * 26 15 14 28 28 C 1.53000 * 111.00305 * 206.42593 * 26 15 14 29 29 C 1.47426 * 125.64447 * 179.71807 * 13 11 9 30 30 H 1.08999 * 109.47439 * 185.02378 * 1 2 3 31 31 H 1.09008 * 109.47188 * 305.02288 * 1 2 3 32 32 H 1.08999 * 109.47018 * 65.01952 * 1 2 3 33 33 H 1.08998 * 109.47258 * 240.00259 * 2 1 3 34 34 H 1.09002 * 109.47352 * 119.99813 * 2 1 3 35 35 H 1.09001 * 110.72397 * 99.87310 * 5 3 2 36 36 H 1.08995 * 110.87261 * 336.66341 * 5 3 2 37 37 H 1.08998 * 111.00710 * 277.42931 * 6 5 3 38 38 H 1.09001 * 111.03815 * 153.58894 * 6 5 3 39 39 H 1.09004 * 110.36759 * 81.82537 * 7 6 5 40 40 H 1.08997 * 110.36604 * 204.04271 * 7 6 5 41 41 H 1.09004 * 109.87968 * 300.43614 * 14 13 11 42 42 H 1.08998 * 109.88409 * 61.44601 * 14 13 11 43 43 H 0.96999 * 120.00598 * 266.45826 * 17 15 14 44 44 H 0.97000 * 119.99824 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47289 * 59.99846 * 27 26 15 46 46 H 1.08999 * 109.47455 * 180.02562 * 27 26 15 47 47 H 1.09004 * 109.47355 * 300.00183 * 27 26 15 48 48 H 1.08997 * 109.47151 * 59.99695 * 28 26 15 49 49 H 1.08999 * 109.46746 * 179.97438 * 28 26 15 50 50 H 1.08997 * 109.47121 * 299.99405 * 28 26 15 51 51 H 1.08997 * 110.36602 * 274.74508 * 29 13 11 52 52 H 1.08998 * 110.36472 * 37.07119 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9853 0.8451 5 6 1.6474 2.1380 -1.3204 6 6 2.8921 3.0080 -1.6384 7 6 4.0422 2.1024 -1.1316 8 7 3.5105 1.4569 0.0826 9 6 4.2480 0.9634 1.0970 10 8 3.7069 0.3765 2.0109 11 6 5.7321 1.1390 1.0961 12 8 6.2732 1.7263 0.1824 13 7 6.4697 0.6450 2.1104 14 6 5.9461 -0.0844 3.2746 15 6 7.1488 -0.4292 4.1780 16 1 7.5024 -1.4411 3.9797 17 7 6.7984 -0.2685 5.5913 18 6 6.2127 -1.3016 6.2732 19 1 6.0088 -2.2347 5.7690 20 6 5.8802 -1.1493 7.6123 21 7 6.1282 -0.0120 8.2267 22 14 5.0807 -2.5583 8.5423 23 1 5.9848 -3.7363 8.5289 24 1 4.8281 -2.1447 9.9460 25 1 3.7942 -2.9141 7.8914 26 6 8.2132 0.6171 3.7540 27 6 7.9860 1.9509 4.4681 28 6 9.6283 0.0945 4.0100 29 6 7.9357 0.7410 2.2327 30 1 -0.3634 -1.0237 0.0900 31 1 -0.3634 0.5898 0.8416 32 1 -0.3633 0.4340 -0.9315 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7657 2.7632 -1.1797 36 1 1.4771 1.4055 -2.1094 37 1 2.8631 3.9479 -1.0872 38 1 2.9801 3.1885 -2.7098 39 1 4.2927 1.3520 -1.8814 40 1 4.9190 2.7028 -0.8890 41 1 5.2414 0.5440 3.8194 42 1 5.4511 -0.9986 2.9473 43 1 6.9811 0.5696 6.0441 44 1 5.8955 0.0946 9.1623 45 1 8.0523 1.8019 5.5459 46 1 8.7455 2.6661 4.1525 47 1 6.9980 2.3351 4.2146 48 1 9.7877 -0.8185 3.4363 49 1 10.3545 0.8473 3.7036 50 1 9.7506 -0.1177 5.0721 51 1 8.4158 -0.0729 1.6896 52 1 8.2851 1.7043 1.8611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996494461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:52 Heat of formation + Delta-G solvation = -48.737116 kcal Electronic energy + Delta-G solvation = -31137.856416 eV Core-core repulsion = 27137.810898 eV Total energy + Delta-G solvation = -4000.045518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85215 -39.55929 -37.94625 -37.50291 -34.19832 -33.60832 -33.08442 -31.66556 -30.78641 -28.07522 -27.66740 -27.05259 -26.95590 -24.95283 -23.87532 -22.98280 -22.11841 -21.29377 -20.36069 -19.05923 -18.57388 -17.26045 -17.03129 -16.84082 -16.32196 -15.98830 -15.16859 -14.90455 -14.73680 -14.41706 -14.06448 -13.88358 -13.86202 -13.60362 -13.42201 -13.24157 -13.10106 -12.68936 -12.56196 -12.49139 -12.25629 -12.20711 -12.04778 -11.81382 -11.67794 -11.54680 -11.41410 -11.26907 -11.01721 -11.00546 -10.89889 -10.84718 -10.60528 -10.54048 -10.41966 -10.21833 -9.84893 -9.62462 -9.29388 -8.89872 -8.79740 -8.37927 -7.03251 -5.80196 -3.09920 1.62607 2.32733 3.37929 3.44219 3.48673 3.49117 3.51511 4.21684 4.34935 4.51159 4.58412 4.59079 4.84211 4.91355 5.00439 5.08106 5.09832 5.16963 5.20117 5.28806 5.46677 5.50344 5.52467 5.59320 5.63291 5.70930 5.74628 5.76415 5.80974 5.83042 5.87585 5.92189 5.95984 6.00976 6.03240 6.08746 6.14990 6.26341 6.31317 6.36531 6.38430 6.48502 6.61244 6.66619 6.74851 6.95991 7.23166 7.53585 7.69234 7.79200 8.19231 8.38248 9.50327 10.03869 10.39057 11.42045 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003520 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.136404 B = 7952.156633 C = 9897.555316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.137 3.863 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.094 3.906 8 N -0.595 5.595 9 C 0.520 3.480 10 O -0.500 6.500 11 C 0.518 3.482 12 O -0.538 6.538 13 N -0.577 5.577 14 C 0.081 3.919 15 C 0.178 3.822 16 H 0.066 0.934 17 N -0.710 5.710 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.008 4.008 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.087 4.087 27 C -0.133 4.133 28 C -0.128 4.128 29 C 0.117 3.883 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.390 0.610 44 H 0.257 0.743 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.072 0.928 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 5.246 -20.400 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.035 3.965 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.028 4.028 8 N -0.331 5.331 9 C 0.303 3.697 10 O -0.374 6.374 11 C 0.301 3.699 12 O -0.417 6.417 13 N -0.310 5.310 14 C -0.045 4.045 15 C 0.065 3.935 16 H 0.084 0.916 17 N -0.352 5.352 18 C -0.377 4.377 19 H 0.089 0.911 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.211 1.211 26 C -0.088 4.088 27 C -0.190 4.190 28 C -0.186 4.186 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.227 0.773 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.881 5.065 -20.216 21.199 hybrid contribution -0.610 -0.531 0.650 1.037 sum -4.490 4.534 -19.566 20.580 Atomic orbital electron populations 1.21707 0.95020 1.02019 1.01680 1.21917 0.96240 0.95991 1.03461 1.21786 0.79259 0.96972 0.98524 0.90324 1.22733 0.98396 0.99042 0.96306 1.22849 0.94333 0.98452 1.01836 1.22673 0.98055 0.96189 0.85919 1.48359 1.06807 1.58226 1.19660 1.19825 0.87839 0.80120 0.81915 1.90824 1.72847 1.39200 1.34487 1.19656 0.87407 0.80465 0.82352 1.90637 1.73051 1.42601 1.35418 1.48374 1.08267 1.52769 1.21549 1.23535 0.99759 0.96150 0.85012 1.21297 0.90058 0.96070 0.86055 0.91629 1.42503 1.72246 1.16457 1.03971 1.19218 1.32245 0.93621 0.92574 0.91076 1.24728 1.01631 0.97177 0.96875 1.69643 1.52990 1.24176 1.11100 0.86270 0.79391 0.81561 0.78982 1.21213 1.21709 1.21147 1.22041 0.96745 0.97373 0.92652 1.21651 1.01034 0.94668 1.01643 1.21645 0.93932 1.00051 1.02981 1.22505 0.79199 1.02099 0.96775 0.92450 0.92482 0.92756 0.91946 0.90031 0.89971 0.90317 0.90558 0.89760 0.91413 0.87646 0.89871 0.91504 0.77320 0.93367 0.90715 0.93229 0.92814 0.92759 0.93049 0.91180 0.91022 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.66 37.16 0.36 -0.92 16 2 C -0.14 -1.52 5.40 -26.73 -0.14 -1.67 16 3 C 0.14 1.51 2.95 -66.81 -0.20 1.31 16 4 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 5 C -0.13 -0.95 5.61 -24.90 -0.14 -1.09 16 6 C -0.14 -1.04 7.09 -24.58 -0.17 -1.22 16 7 C 0.09 1.01 6.22 -2.53 -0.02 1.00 16 8 N -0.59 -7.92 3.08 -163.31 -0.50 -8.42 16 9 C 0.52 8.64 7.71 -11.59 -0.09 8.55 16 10 O -0.50 -9.58 12.97 5.50 0.07 -9.51 16 11 C 0.52 8.79 7.88 -11.58 -0.09 8.70 16 12 O -0.54 -9.16 13.96 5.50 0.08 -9.09 16 13 N -0.58 -9.81 3.31 -170.89 -0.57 -10.38 16 14 C 0.08 1.55 4.92 -3.07 -0.02 1.53 16 15 C 0.18 3.44 2.85 -66.09 -0.19 3.25 16 16 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16 17 N -0.71 -17.04 5.08 -51.65 -0.26 -17.30 16 18 C -0.25 -6.64 9.98 -15.06 -0.15 -6.79 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 26 C -0.09 -1.38 0.87 -152.24 -0.13 -1.51 16 27 C -0.13 -2.18 7.94 37.15 0.30 -1.88 16 28 C -0.13 -1.80 8.68 37.16 0.32 -1.47 16 29 C 0.12 1.74 5.85 -2.41 -0.01 1.72 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.05 0.38 7.58 -51.93 -0.39 -0.01 16 33 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.08 1.16 6.63 -51.93 -0.34 0.82 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.53 7.80 -51.93 -0.41 0.12 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.30 5.88 -51.93 -0.31 1.00 16 41 H 0.08 1.84 7.47 -51.93 -0.39 1.45 16 42 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 43 H 0.39 9.83 5.26 -40.82 -0.21 9.61 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 48 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 52 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -30.87 401.65 -8.95 -39.82 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -9.05 Total: 9.21 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.47 Total: 9.19 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.61 Total: -62.88 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.15 Total: -18.59 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.87 -8.95 -39.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.918 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds