Wall clock time and date at job start Tue Mar 31 2020 19:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47336 * 2 1 4 4 H 1.09008 * 109.86932 * 55.52547 * 3 2 1 5 5 C 1.54318 * 109.88050 * 294.51059 * 3 2 1 6 6 C 1.55162 * 102.93969 * 218.23023 * 5 3 2 7 7 C 1.54909 * 101.58045 * 35.50214 * 6 5 3 8 8 N 1.47285 * 110.00148 * 176.58011 * 3 2 1 9 9 C 1.34774 * 125.79729 * 298.43124 * 8 3 2 10 10 O 1.21348 * 119.99966 * 4.63677 * 9 8 3 11 11 C 1.49452 * 119.99834 * 184.63652 * 9 8 3 12 12 O 1.21346 * 120.00174 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99654 * 180.02562 * 11 9 8 14 14 C 1.47021 * 125.64953 * 0.02658 * 13 11 9 15 15 C 1.54319 * 107.27099 * 181.02297 * 14 13 11 16 16 H 1.09000 * 110.72061 * 263.83337 * 15 14 13 17 17 N 1.46500 * 110.72259 * 140.55249 * 15 14 13 18 18 C 1.36938 * 119.99596 * 86.45474 * 17 15 14 19 19 H 1.08002 * 120.00233 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00000 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46645 * 60.00119 * 22 20 18 24 24 H 1.48499 * 109.46754 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46871 * 299.99894 * 22 20 18 26 26 C 1.55165 * 102.94369 * 22.19262 * 15 14 13 27 27 C 1.52994 * 111.00534 * 82.57199 * 26 15 14 28 28 C 1.53000 * 111.00305 * 206.42593 * 26 15 14 29 29 C 1.47426 * 125.64447 * 179.71807 * 13 11 9 30 30 H 1.08999 * 109.47439 * 185.02378 * 1 2 3 31 31 H 1.09008 * 109.47188 * 305.02288 * 1 2 3 32 32 H 1.08999 * 109.47018 * 65.01952 * 1 2 3 33 33 H 1.08998 * 109.47258 * 240.00259 * 2 1 3 34 34 H 1.09002 * 109.47352 * 119.99813 * 2 1 3 35 35 H 1.09001 * 110.72397 * 99.87310 * 5 3 2 36 36 H 1.08995 * 110.87261 * 336.66341 * 5 3 2 37 37 H 1.08998 * 111.00710 * 277.42931 * 6 5 3 38 38 H 1.09001 * 111.03815 * 153.58894 * 6 5 3 39 39 H 1.09004 * 110.36759 * 81.82537 * 7 6 5 40 40 H 1.08997 * 110.36604 * 204.04271 * 7 6 5 41 41 H 1.09004 * 109.87968 * 300.43614 * 14 13 11 42 42 H 1.08998 * 109.88409 * 61.44601 * 14 13 11 43 43 H 0.96999 * 120.00598 * 266.45826 * 17 15 14 44 44 H 0.97000 * 119.99824 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47289 * 59.99846 * 27 26 15 46 46 H 1.08999 * 109.47455 * 180.02562 * 27 26 15 47 47 H 1.09004 * 109.47355 * 300.00183 * 27 26 15 48 48 H 1.08997 * 109.47151 * 59.99695 * 28 26 15 49 49 H 1.08999 * 109.46746 * 179.97438 * 28 26 15 50 50 H 1.08997 * 109.47121 * 299.99405 * 28 26 15 51 51 H 1.08997 * 110.36602 * 274.74508 * 29 13 11 52 52 H 1.08998 * 110.36472 * 37.07119 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9853 0.8451 5 6 1.6474 2.1380 -1.3204 6 6 2.8921 3.0080 -1.6384 7 6 4.0422 2.1024 -1.1316 8 7 3.5105 1.4569 0.0826 9 6 4.2480 0.9634 1.0970 10 8 3.7069 0.3765 2.0109 11 6 5.7321 1.1390 1.0961 12 8 6.2732 1.7263 0.1824 13 7 6.4697 0.6450 2.1104 14 6 5.9461 -0.0844 3.2746 15 6 7.1488 -0.4292 4.1780 16 1 7.5024 -1.4411 3.9797 17 7 6.7984 -0.2685 5.5913 18 6 6.2127 -1.3016 6.2732 19 1 6.0088 -2.2347 5.7690 20 6 5.8802 -1.1493 7.6123 21 7 6.1282 -0.0120 8.2267 22 14 5.0807 -2.5583 8.5423 23 1 5.9848 -3.7363 8.5289 24 1 4.8281 -2.1447 9.9460 25 1 3.7942 -2.9141 7.8914 26 6 8.2132 0.6171 3.7540 27 6 7.9860 1.9509 4.4681 28 6 9.6283 0.0945 4.0100 29 6 7.9357 0.7410 2.2327 30 1 -0.3634 -1.0237 0.0900 31 1 -0.3634 0.5898 0.8416 32 1 -0.3633 0.4340 -0.9315 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7657 2.7632 -1.1797 36 1 1.4771 1.4055 -2.1094 37 1 2.8631 3.9479 -1.0872 38 1 2.9801 3.1885 -2.7098 39 1 4.2927 1.3520 -1.8814 40 1 4.9190 2.7028 -0.8890 41 1 5.2414 0.5440 3.8194 42 1 5.4511 -0.9986 2.9473 43 1 6.9811 0.5696 6.0441 44 1 5.8955 0.0946 9.1623 45 1 8.0523 1.8019 5.5459 46 1 8.7455 2.6661 4.1525 47 1 6.9980 2.3351 4.2146 48 1 9.7877 -0.8185 3.4363 49 1 10.3545 0.8473 3.7036 50 1 9.7506 -0.1177 5.0721 51 1 8.4158 -0.0729 1.6896 52 1 8.2851 1.7043 1.8611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996494461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:51 Heat of formation + Delta-G solvation = -67.741655 kcal Electronic energy + Delta-G solvation = -31138.680514 eV Core-core repulsion = 27137.810898 eV Total energy + Delta-G solvation = -4000.869617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11074 -40.79139 -39.25576 -38.72740 -35.94900 -34.68661 -34.40941 -32.69013 -32.58839 -29.32460 -28.91418 -28.40624 -28.17536 -26.11890 -25.72123 -24.01241 -23.08618 -22.64153 -21.37432 -20.40107 -19.88118 -19.18294 -18.27582 -18.10088 -17.57615 -17.24844 -16.69334 -16.14349 -15.96547 -15.75743 -15.61726 -15.27501 -14.96296 -14.72408 -14.63886 -14.39950 -14.31180 -14.02595 -13.86900 -13.72715 -13.47701 -13.41991 -13.01162 -13.00489 -12.85826 -12.83165 -12.71728 -12.66713 -12.54113 -12.16737 -12.15963 -12.09513 -11.96098 -11.82581 -11.60708 -11.53847 -11.45457 -11.32232 -10.96996 -10.50449 -9.97859 -9.71234 -9.04940 -7.95077 -5.23871 0.29222 1.13390 1.47089 1.49940 1.55388 2.05308 2.27155 2.56498 3.04717 3.35496 3.48977 3.59250 3.65883 3.75724 3.80627 3.83005 4.12956 4.15351 4.19023 4.24659 4.32036 4.36951 4.42557 4.44884 4.53766 4.57467 4.71314 4.76442 4.80741 4.86620 4.89751 4.92446 4.97229 4.98119 5.04150 5.07119 5.08361 5.11237 5.14894 5.20006 5.22815 5.23289 5.33184 5.41819 5.43187 5.50411 5.53098 6.06954 6.16316 6.26971 6.49378 6.88890 7.34752 8.06796 8.31656 9.27807 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003520 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.136404 B = 7952.156633 C = 9897.555316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.065 0.935 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.086 3.914 8 N -0.589 5.589 9 C 0.509 3.491 10 O -0.539 6.539 11 C 0.517 3.483 12 O -0.535 6.535 13 N -0.580 5.580 14 C 0.103 3.897 15 C 0.171 3.829 16 H 0.070 0.930 17 N -0.720 5.720 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.284 1.284 26 C -0.077 4.077 27 C -0.126 4.126 28 C -0.123 4.123 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.381 0.619 44 H 0.251 0.749 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.047 0.953 51 H 0.094 0.906 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 5.551 -23.527 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.035 4.035 8 N -0.323 5.323 9 C 0.292 3.708 10 O -0.417 6.417 11 C 0.300 3.700 12 O -0.415 6.415 13 N -0.313 5.313 14 C -0.023 4.023 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.092 0.908 20 C -0.260 4.260 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.221 1.221 25 H -0.211 1.211 26 C -0.079 4.079 27 C -0.184 4.184 28 C -0.180 4.180 29 C -0.002 4.002 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.217 0.783 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.113 0.887 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.786 5.379 -23.436 24.342 hybrid contribution -0.645 -0.574 1.488 1.720 sum -4.430 4.805 -21.948 22.901 Atomic orbital electron populations 1.21678 0.93006 1.02292 1.02874 1.21850 0.97958 0.95668 1.01726 1.22070 0.77741 0.97267 1.00450 0.91696 1.22755 0.99034 0.99275 0.94205 1.22855 0.92497 0.97512 1.03488 1.22875 0.98965 0.96733 0.84942 1.48574 1.07994 1.56468 1.19270 1.19909 0.87977 0.80441 0.82456 1.90809 1.73350 1.41331 1.36182 1.19781 0.87688 0.80241 0.82249 1.90635 1.73180 1.42431 1.35214 1.48356 1.09250 1.52733 1.20922 1.22989 0.98747 0.95035 0.85527 1.21489 0.91210 0.97598 0.83717 0.91244 1.42613 1.72210 1.15491 1.05782 1.19584 1.30956 0.94247 0.92850 0.90761 1.25471 1.03150 0.99458 0.97954 1.69792 1.54848 1.26025 1.10954 0.85299 0.78520 0.79179 0.77294 1.20043 1.22147 1.21052 1.22001 0.96869 0.95752 0.93257 1.21584 1.00922 0.95788 1.00097 1.21611 0.92875 1.01653 1.01881 1.22649 0.77871 1.03780 0.95873 0.92398 0.93027 0.90046 0.91277 0.94123 0.87765 0.88612 0.90551 0.86771 0.90464 0.89252 0.93447 0.92718 0.78284 0.93992 0.93241 0.90118 0.94834 0.91164 0.90181 0.93392 0.88747 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.66 71.98 0.70 -1.59 16 2 C -0.13 -2.94 5.40 30.59 0.17 -2.77 16 3 C 0.13 2.70 2.95 45.29 0.13 2.83 16 4 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 5 C -0.12 -1.35 5.61 31.78 0.18 -1.18 16 6 C -0.13 -1.51 7.09 31.99 0.23 -1.29 16 7 C 0.09 1.72 6.22 86.85 0.54 2.26 16 8 N -0.59 -15.61 3.08 -788.97 -2.43 -18.04 16 9 C 0.51 17.52 7.71 87.27 0.67 18.19 16 10 O -0.54 -22.09 12.97 -3.24 -0.04 -22.13 16 11 C 0.52 17.61 7.88 87.27 0.69 18.30 16 12 O -0.54 -17.72 13.96 -3.23 -0.05 -17.76 16 13 N -0.58 -19.78 3.31 -812.93 -2.69 -22.47 16 14 C 0.10 4.13 4.92 86.73 0.43 4.55 16 15 C 0.17 6.73 2.85 46.18 0.13 6.86 16 16 H 0.07 2.69 8.02 -2.39 -0.02 2.67 16 17 N -0.72 -35.81 5.08 -317.32 -1.61 -37.42 16 18 C -0.24 -13.57 9.98 84.03 0.84 -12.73 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 22 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 26 C -0.08 -2.40 0.87 -50.71 -0.04 -2.44 16 27 C -0.13 -4.16 7.94 71.98 0.57 -3.59 16 28 C -0.12 -3.18 8.68 71.98 0.62 -2.55 16 29 C 0.12 3.34 5.85 86.93 0.51 3.85 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.08 0.89 7.58 -2.39 -0.02 0.87 16 33 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 34 H 0.04 1.23 6.63 -2.39 -0.02 1.21 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.87 7.80 -2.39 -0.02 0.85 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 2.10 5.88 -2.39 -0.01 2.09 16 41 H 0.05 2.24 7.47 -2.39 -0.02 2.22 16 42 H 0.05 2.29 7.69 -2.39 -0.02 2.27 16 43 H 0.38 20.14 5.26 -92.71 -0.49 19.65 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.05 1.88 6.34 -2.39 -0.02 1.87 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.21 7.91 -2.38 -0.02 1.19 16 48 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.09 2.27 7.99 -2.39 -0.02 2.25 16 52 H 0.09 2.36 7.95 -2.39 -0.02 2.35 16 Total: -1.00 -70.57 401.65 2.73 -67.84 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.41 Total: 34.68 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 6.82 Total: 25.28 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -6.45 Total: -136.60 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.09 Total: -39.90 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -70.57 2.73 -67.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.100 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds