Wall clock time and date at job start Tue Mar 31 2020 19:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46769 * 2 1 4 4 H 1.09000 * 109.99845 * 306.58504 * 3 2 1 5 5 C 1.54323 * 109.88058 * 67.68001 * 3 2 1 6 6 C 1.55155 * 102.94073 * 141.60934 * 5 3 2 7 7 C 1.55123 * 101.49019 * 324.33184 * 6 5 3 8 8 N 1.47017 * 109.88226 * 185.48690 * 3 2 1 9 9 C 1.34778 * 125.64890 * 61.60695 * 8 3 2 10 10 O 1.21348 * 119.99973 * 355.39303 * 9 8 3 11 11 C 1.49450 * 120.00202 * 175.38439 * 9 8 3 12 12 O 1.21354 * 120.00094 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00202 * 180.02562 * 11 9 8 14 14 C 1.48143 * 127.83473 * 0.02562 * 13 11 9 15 15 C 1.54384 * 104.61707 * 219.58418 * 14 13 11 16 16 H 1.09001 * 110.43205 * 95.05677 * 15 14 13 17 17 N 1.46498 * 110.34440 * 217.26534 * 15 14 13 18 18 C 1.36935 * 120.00019 * 270.53979 * 17 15 14 19 19 H 1.08005 * 120.00360 * 0.26809 * 18 17 15 20 20 C 1.38812 * 120.00006 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00462 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46916 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47145 * 119.99925 * 22 20 18 25 25 H 1.48504 * 109.47088 * 240.00153 * 22 20 18 26 26 C 1.54284 * 104.96374 * 336.13795 * 15 14 13 27 27 C 1.52997 * 110.34644 * 118.87102 * 26 15 14 28 28 C 1.53005 * 110.34263 * 241.02671 * 26 15 14 29 29 C 1.48140 * 127.83857 * 180.02562 * 13 11 9 30 30 H 1.09006 * 109.46860 * 184.95526 * 1 2 3 31 31 H 1.09003 * 109.47588 * 304.95164 * 1 2 3 32 32 H 1.08997 * 109.47764 * 64.95869 * 1 2 3 33 33 H 1.08998 * 109.47499 * 240.00512 * 2 1 3 34 34 H 1.08999 * 109.47632 * 120.00113 * 2 1 3 35 35 H 1.09005 * 110.71954 * 259.96956 * 5 3 2 36 36 H 1.08996 * 110.72421 * 23.06869 * 5 3 2 37 37 H 1.09004 * 111.00739 * 82.57641 * 6 5 3 38 38 H 1.09007 * 111.00404 * 206.38294 * 6 5 3 39 39 H 1.09000 * 110.49631 * 278.45948 * 7 6 5 40 40 H 1.08997 * 110.35087 * 156.05892 * 7 6 5 41 41 H 1.09005 * 110.40797 * 100.80403 * 14 13 11 42 42 H 1.09001 * 110.41333 * 338.37310 * 14 13 11 43 43 H 0.96995 * 120.00145 * 90.53815 * 17 15 14 44 44 H 0.97000 * 120.00331 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.47222 * 59.99521 * 27 26 15 46 46 H 1.09000 * 109.47298 * 180.02562 * 27 26 15 47 47 H 1.09006 * 109.46917 * 300.00420 * 27 26 15 48 48 H 1.08994 * 109.47319 * 59.99508 * 28 26 15 49 49 H 1.09000 * 109.46980 * 179.97438 * 28 26 15 50 50 H 1.09005 * 109.46906 * 299.99137 * 28 26 15 51 51 H 1.09002 * 110.41088 * 21.62326 * 29 13 11 52 52 H 1.09010 * 110.40377 * 259.19747 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5886 1.9975 -0.8225 5 6 1.6952 2.1210 1.3425 6 6 2.9524 2.9841 1.6286 7 6 4.0821 2.0782 1.0725 8 7 3.5041 1.4553 -0.1322 9 6 4.2025 0.9723 -1.1788 10 8 3.6265 0.3990 -2.0799 11 6 5.6864 1.1430 -1.2297 12 8 6.2625 1.7161 -0.3284 13 7 6.3847 0.6605 -2.2766 14 6 5.8642 -0.0606 -3.4614 15 6 6.9074 -1.1654 -3.7345 16 1 6.6047 -2.0998 -3.2618 17 7 7.0799 -1.3577 -5.1765 18 6 6.2914 -2.2545 -5.8468 19 1 5.5394 -2.8169 -5.3131 20 6 6.4552 -2.4372 -7.2130 21 7 7.3679 -1.7481 -7.8644 22 14 5.3791 -3.6601 -8.1275 23 1 4.4380 -4.3010 -7.1741 24 1 4.6102 -2.9513 -9.1818 25 1 6.2341 -4.7006 -8.7533 26 6 8.2148 -0.6437 -3.1029 27 6 8.6900 -1.5941 -2.0021 28 6 9.2971 -0.4873 -4.1730 29 6 7.8470 0.7308 -2.5035 30 1 -0.3633 -1.0239 0.0888 31 1 -0.3634 0.5887 0.8423 32 1 -0.3634 0.4350 -0.9310 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.8106 2.7499 1.2409 36 1 1.5492 1.3762 2.1248 37 1 2.9065 3.9315 1.0914 38 1 3.0772 3.1500 2.6987 39 1 4.3527 1.3145 1.8017 40 1 4.9534 2.6776 0.8087 41 1 5.7920 0.6133 -4.3151 42 1 4.8921 -0.5018 -3.2411 43 1 7.7525 -0.8499 -5.6565 44 1 7.4821 -1.8755 -8.8192 45 1 8.8699 -2.5815 -2.4273 46 1 9.6130 -1.2123 -1.5659 47 1 7.9252 -1.6656 -1.2286 48 1 8.9602 0.2214 -4.9296 49 1 10.2132 -0.1180 -3.7120 50 1 9.4887 -1.4534 -4.6399 51 1 8.3709 0.8868 -1.5604 52 1 8.0844 1.5284 -3.2076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996494462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:55 Heat of formation + Delta-G solvation = -41.171609 kcal Electronic energy + Delta-G solvation = -31112.694706 eV Core-core repulsion = 27112.977253 eV Total energy + Delta-G solvation = -3999.717453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87585 -39.55383 -37.98290 -37.56159 -34.20170 -33.62889 -33.09263 -31.71595 -30.77958 -28.11255 -27.73382 -27.13056 -26.73977 -24.91163 -23.80512 -22.97643 -22.15886 -21.54619 -20.46115 -19.07875 -18.43313 -17.34439 -17.05989 -16.82968 -16.31549 -15.86199 -15.27212 -14.87160 -14.73374 -14.40217 -14.04901 -13.98933 -13.80612 -13.65725 -13.52143 -13.31487 -13.26286 -12.74246 -12.55297 -12.51587 -12.29926 -12.11941 -11.81161 -11.74289 -11.67357 -11.61968 -11.43564 -11.23933 -11.03054 -10.96020 -10.91296 -10.85733 -10.62819 -10.51071 -10.39508 -10.10751 -9.80842 -9.63280 -9.26401 -8.95509 -8.81298 -8.47455 -7.00978 -5.80279 -3.09399 1.57969 2.27719 3.34488 3.42940 3.46904 3.50168 3.51706 4.18415 4.30851 4.48403 4.55240 4.59064 4.88405 4.93612 4.97629 5.05444 5.12551 5.17139 5.19302 5.25475 5.43748 5.47328 5.51885 5.60045 5.63793 5.69112 5.73111 5.78984 5.81976 5.82543 5.85003 5.88889 5.95752 5.98702 6.04649 6.07282 6.22524 6.26932 6.31662 6.32284 6.36191 6.47883 6.57012 6.68573 6.86118 6.97106 7.18274 7.60499 7.70726 7.76716 8.15719 8.38510 9.50663 10.04763 10.40060 11.42073 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003369 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.154424 B = 8309.722026 C =10108.841437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.137 3.863 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.136 4.136 7 C 0.093 3.907 8 N -0.593 5.593 9 C 0.523 3.477 10 O -0.504 6.504 11 C 0.524 3.476 12 O -0.538 6.538 13 N -0.584 5.584 14 C 0.063 3.937 15 C 0.175 3.825 16 H 0.064 0.936 17 N -0.714 5.714 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.090 4.090 27 C -0.130 4.130 28 C -0.129 4.129 29 C 0.116 3.884 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.390 0.610 44 H 0.255 0.745 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 8.459 20.102 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.174 4.174 7 C -0.029 4.029 8 N -0.328 5.328 9 C 0.307 3.693 10 O -0.379 6.379 11 C 0.307 3.693 12 O -0.418 6.418 13 N -0.316 5.316 14 C -0.062 4.062 15 C 0.063 3.937 16 H 0.082 0.918 17 N -0.357 5.357 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.091 4.091 27 C -0.187 4.187 28 C -0.187 4.187 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.228 0.772 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.093 0.907 51 H 0.098 0.902 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.877 8.306 19.984 22.708 hybrid contribution -0.464 -0.439 -0.806 1.029 sum -7.341 7.867 19.178 21.990 Atomic orbital electron populations 1.21710 0.95018 1.01929 1.01813 1.21935 0.96282 0.95946 1.03528 1.21745 0.79495 0.97074 0.98281 0.90309 1.22747 0.98458 0.99200 0.96134 1.22883 0.94345 0.98441 1.01770 1.22746 0.97668 0.96504 0.85971 1.48332 1.07092 1.58780 1.18633 1.19863 0.88034 0.79733 0.81710 1.90728 1.70823 1.39846 1.36455 1.19516 0.87427 0.80318 0.82014 1.90643 1.70913 1.43099 1.37101 1.48856 1.09177 1.53300 1.20247 1.24160 1.01524 0.95358 0.85109 1.21162 0.90394 0.95134 0.87016 0.91820 1.42705 1.43271 1.48339 1.01400 1.19335 1.12400 1.14804 0.90819 0.91008 1.24725 0.99208 1.00120 0.96553 1.69659 1.35896 1.44072 1.08332 0.86131 0.79704 0.80615 0.79831 1.20479 1.21860 1.21902 1.21803 0.97428 0.93845 0.96072 1.21790 1.00174 0.99415 0.97369 1.21678 0.96035 1.03494 0.97501 1.22597 0.79393 0.97848 1.00789 0.92444 0.92701 0.92508 0.89973 0.91902 0.89980 0.90265 0.90533 0.89741 0.91266 0.87563 0.90501 0.87920 0.77191 0.93509 0.91990 0.92997 0.93207 0.91953 0.93618 0.90719 0.90189 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.83 37.16 0.37 -0.86 16 2 C -0.14 -1.47 5.41 -26.73 -0.14 -1.61 16 3 C 0.14 1.42 2.92 -66.95 -0.20 1.23 16 4 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.13 -0.90 5.55 -24.90 -0.14 -1.04 16 6 C -0.14 -0.98 7.10 -24.47 -0.17 -1.15 16 7 C 0.09 0.97 6.25 -2.41 -0.02 0.95 16 8 N -0.59 -7.56 3.06 -163.38 -0.50 -8.06 16 9 C 0.52 8.36 7.71 -11.58 -0.09 8.27 16 10 O -0.50 -9.19 12.57 5.50 0.07 -9.12 16 11 C 0.52 8.73 7.95 -11.58 -0.09 8.64 16 12 O -0.54 -9.08 13.98 5.49 0.08 -9.00 16 13 N -0.58 -9.89 3.32 -169.81 -0.56 -10.45 16 14 C 0.06 1.20 6.32 -2.41 -0.02 1.19 16 15 C 0.18 3.44 3.35 -66.53 -0.22 3.22 16 16 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 17 N -0.71 -17.05 4.57 -52.07 -0.24 -17.29 16 18 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C -0.09 -1.45 1.03 -153.10 -0.16 -1.61 16 27 C -0.13 -1.87 8.24 37.16 0.31 -1.56 16 28 C -0.13 -2.10 7.12 37.16 0.26 -1.84 16 29 C 0.12 1.78 6.14 -2.41 -0.01 1.77 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 7.36 -51.93 -0.38 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.13 6.55 -51.93 -0.34 0.79 16 34 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.50 7.76 -51.93 -0.40 0.10 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.27 5.88 -51.93 -0.31 0.96 16 41 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 42 H 0.10 2.08 5.48 -51.93 -0.28 1.79 16 43 H 0.39 9.68 5.11 -40.82 -0.21 9.47 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.09 6.93 -51.93 -0.36 0.73 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.37 7.76 -51.93 -0.40 0.97 16 51 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 52 H 0.08 1.12 7.84 -51.92 -0.41 0.71 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -30.51 399.48 -8.92 -39.43 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -8.92 Total: 9.34 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.57 Total: 8.51 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.58 Total: -62.36 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.15 Total: -18.12 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.51 -8.92 -39.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.739 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds