Wall clock time and date at job start Tue Mar 31 2020 19:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 H 1.09005 * 109.99657 * 306.58518 * 3 2 1 5 5 C 1.54320 * 109.77627 * 67.73610 * 3 2 1 6 6 C 1.55158 * 102.86245 * 141.88796 * 5 3 2 7 7 C 1.54909 * 101.58290 * 324.30022 * 6 5 3 8 8 N 1.47025 * 109.88644 * 185.48640 * 3 2 1 9 9 C 1.34770 * 125.64661 * 61.67512 * 8 3 2 10 10 O 1.21357 * 120.00361 * 355.11220 * 9 8 3 11 11 C 1.49452 * 120.00165 * 175.11250 * 9 8 3 12 12 O 1.21346 * 119.99949 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00147 * 179.72470 * 11 9 8 14 14 C 1.47025 * 125.65135 * 0.29923 * 13 11 9 15 15 C 1.54315 * 107.27256 * 181.02479 * 14 13 11 16 16 H 1.09008 * 110.72140 * 263.64970 * 15 14 13 17 17 N 1.46501 * 110.72300 * 140.55778 * 15 14 13 18 18 C 1.36945 * 119.99664 * 86.44783 * 17 15 14 19 19 H 1.08003 * 120.00421 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99418 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00619 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99547 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47325 * 89.99971 * 22 20 18 24 24 H 1.48503 * 109.47118 * 209.99906 * 22 20 18 25 25 H 1.48502 * 109.47294 * 329.99554 * 22 20 18 26 26 C 1.55157 * 102.94729 * 22.19292 * 15 14 13 27 27 C 1.52995 * 111.00188 * 82.57061 * 26 15 14 28 28 C 1.52992 * 111.00720 * 206.38981 * 26 15 14 29 29 C 1.47425 * 125.64949 * 179.97438 * 13 11 9 30 30 H 1.08998 * 109.46767 * 184.95949 * 1 2 3 31 31 H 1.08996 * 109.47097 * 304.95672 * 1 2 3 32 32 H 1.08994 * 109.47119 * 64.96084 * 1 2 3 33 33 H 1.08996 * 109.47559 * 239.99850 * 2 1 3 34 34 H 1.09008 * 109.46839 * 119.99816 * 2 1 3 35 35 H 1.09001 * 110.92281 * 23.47218 * 5 3 2 36 36 H 1.09002 * 110.74316 * 260.21977 * 5 3 2 37 37 H 1.09007 * 111.00115 * 206.23156 * 6 5 3 38 38 H 1.08994 * 111.03736 * 82.39825 * 6 5 3 39 39 H 1.08999 * 110.37129 * 278.17654 * 7 6 5 40 40 H 1.08994 * 110.36470 * 155.84694 * 7 6 5 41 41 H 1.09003 * 109.88281 * 300.44231 * 14 13 11 42 42 H 1.09006 * 109.87826 * 61.60440 * 14 13 11 43 43 H 0.96992 * 120.00176 * 266.45513 * 17 15 14 44 44 H 0.96998 * 120.00587 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.47426 * 60.00240 * 27 26 15 46 46 H 1.09002 * 109.47072 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.47610 * 300.00371 * 27 26 15 48 48 H 1.09002 * 109.47580 * 59.99740 * 28 26 15 49 49 H 1.09003 * 109.47057 * 180.02562 * 28 26 15 50 50 H 1.09008 * 109.47182 * 299.99922 * 28 26 15 51 51 H 1.09002 * 110.36289 * 274.74799 * 29 13 11 52 52 H 1.09001 * 110.36550 * 37.06578 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5886 1.9974 -0.8225 5 6 1.6953 2.1181 1.3439 6 6 2.9499 2.9864 1.6258 7 6 4.0817 2.0880 1.0676 8 7 3.5042 1.4552 -0.1322 9 6 4.2025 0.9734 -1.1793 10 8 3.6270 0.3967 -2.0788 11 6 5.6857 1.1493 -1.2330 12 8 6.2612 1.7256 -0.3335 13 7 6.3847 0.6626 -2.2775 14 6 5.8171 -0.0529 -3.4297 15 6 6.9916 -0.4392 -4.3530 16 1 7.1121 0.2936 -5.1510 17 7 6.7945 -1.7802 -4.9090 18 6 6.0660 -1.9453 -6.0567 19 1 5.6370 -1.0869 -6.5522 20 6 5.8788 -3.2161 -6.5831 21 7 6.4020 -4.2621 -5.9796 22 14 4.8856 -3.4412 -8.1491 23 1 5.7890 -3.3576 -9.3247 24 1 4.2225 -4.7698 -8.1280 25 1 3.8555 -2.3753 -8.2396 26 6 8.2104 -0.4166 -3.3931 27 6 8.3178 -1.7279 -2.6123 28 6 9.5046 -0.1287 -4.1566 29 6 7.8443 0.7654 -2.4572 30 1 -0.3633 -1.0238 0.0888 31 1 -0.3633 0.5888 0.8422 32 1 -0.3633 0.4349 -0.9310 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5564 1.3748 2.1290 36 1 0.8078 2.7433 1.2453 37 1 3.0763 3.1547 2.6953 38 1 2.9002 3.9324 1.0867 39 1 4.3601 1.3298 1.7996 40 1 4.9477 2.6924 0.7981 41 1 5.3011 -0.9512 -3.0906 42 1 5.1234 0.5963 -3.9640 43 1 7.1800 -2.5511 -4.4641 44 1 6.2709 -5.1501 -6.3473 45 1 8.4375 -2.5573 -3.3095 46 1 9.1801 -1.6850 -1.9469 47 1 7.4122 -1.8758 -2.0239 48 1 9.4286 0.8414 -4.6478 49 1 10.3429 -0.1190 -3.4600 50 1 9.6644 -0.9039 -4.9061 51 1 8.1030 1.7160 -2.9236 52 1 8.3528 0.6613 -1.4987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996494463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:58 Heat of formation + Delta-G solvation = -48.755481 kcal Electronic energy + Delta-G solvation = -31166.166983 eV Core-core repulsion = 27166.120669 eV Total energy + Delta-G solvation = -4000.046314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86346 -39.56970 -37.94845 -37.50258 -34.19811 -33.59163 -33.08587 -31.67196 -30.78832 -28.07827 -27.66912 -27.05262 -26.95535 -24.94593 -23.87602 -22.96292 -22.12074 -21.30028 -20.36704 -19.05435 -18.58451 -17.25850 -17.01722 -16.86750 -16.33677 -15.87735 -15.32132 -14.89028 -14.69080 -14.27563 -14.08836 -14.01147 -13.80300 -13.64071 -13.39716 -13.27819 -13.06162 -12.69114 -12.64034 -12.39490 -12.30468 -12.18554 -12.05328 -11.77577 -11.67663 -11.54448 -11.39008 -11.28283 -11.01620 -11.00595 -10.89608 -10.86007 -10.59818 -10.53662 -10.41759 -10.19315 -9.84392 -9.63004 -9.29599 -8.90883 -8.78953 -8.38040 -7.03305 -5.80485 -3.10182 1.62442 2.33286 3.38084 3.43149 3.48698 3.50066 3.51607 4.21334 4.34773 4.51210 4.58644 4.59029 4.84100 4.92348 5.02300 5.08146 5.10342 5.16914 5.21936 5.29460 5.47439 5.50837 5.52433 5.59187 5.63022 5.71697 5.74622 5.75991 5.80764 5.83097 5.90273 5.92177 5.95916 6.02757 6.03281 6.10774 6.15013 6.26356 6.34593 6.36490 6.38290 6.48316 6.61275 6.66523 6.74796 6.95781 7.22905 7.53520 7.69541 7.79168 8.19192 8.37905 9.50114 10.03656 10.38826 11.41809 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.003554 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.517572 B = 7875.998231 C = 9834.831884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.138 3.862 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.094 3.906 8 N -0.595 5.595 9 C 0.520 3.480 10 O -0.500 6.500 11 C 0.518 3.482 12 O -0.538 6.538 13 N -0.577 5.577 14 C 0.081 3.919 15 C 0.177 3.823 16 H 0.066 0.934 17 N -0.710 5.710 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.086 4.086 27 C -0.133 4.133 28 C -0.128 4.128 29 C 0.116 3.884 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.389 0.611 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.071 0.929 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 13.699 15.789 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.028 4.028 8 N -0.330 5.330 9 C 0.303 3.697 10 O -0.374 6.374 11 C 0.301 3.699 12 O -0.417 6.417 13 N -0.310 5.310 14 C -0.044 4.044 15 C 0.065 3.935 16 H 0.084 0.916 17 N -0.352 5.352 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.088 4.088 27 C -0.190 4.190 28 C -0.186 4.186 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.227 0.773 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.312 13.632 15.554 21.127 hybrid contribution -0.631 -0.472 -0.674 1.037 sum -4.943 13.160 14.880 20.470 Atomic orbital electron populations 1.21705 0.95049 1.01939 1.01738 1.21937 0.96252 0.95948 1.03610 1.21725 0.79532 0.97085 0.98153 0.90379 1.22744 0.98420 0.99184 0.96167 1.22849 0.94437 0.98445 1.01736 1.22680 0.97554 0.96406 0.86174 1.48299 1.07063 1.58817 1.18832 1.19828 0.88053 0.80015 0.81833 1.90826 1.70826 1.39225 1.36477 1.19655 0.87607 0.80462 0.82165 1.90637 1.71000 1.42977 1.37099 1.48372 1.08742 1.53136 1.20707 1.23535 0.98830 0.96606 0.85474 1.21306 0.89626 0.90158 0.92423 0.91619 1.42515 1.62603 1.01725 1.28358 1.19263 1.25160 0.92748 1.00393 0.91019 1.24728 1.00962 0.95494 0.99263 1.69648 1.49246 0.98061 1.40931 0.86196 0.79731 0.77125 0.83180 1.21697 1.21777 1.20645 1.22037 0.96744 0.94447 0.95559 1.21653 1.00962 0.96768 0.99611 1.21646 0.95085 1.01993 0.99886 1.22507 0.79342 0.98600 1.00130 0.92428 0.92743 0.92542 0.89914 0.91909 0.90261 0.89997 0.89763 0.90604 0.91344 0.87656 0.89841 0.91515 0.77332 0.93418 0.90717 0.93229 0.92811 0.92755 0.93048 0.91185 0.91034 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.83 37.16 0.37 -0.97 16 2 C -0.14 -1.60 5.41 -26.73 -0.14 -1.74 16 3 C 0.14 1.51 2.92 -66.96 -0.20 1.32 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.13 -0.96 5.54 -24.90 -0.14 -1.09 16 6 C -0.14 -1.03 7.08 -24.58 -0.17 -1.20 16 7 C 0.09 1.02 6.23 -2.53 -0.02 1.00 16 8 N -0.59 -7.90 3.07 -163.52 -0.50 -8.40 16 9 C 0.52 8.62 7.70 -11.59 -0.09 8.53 16 10 O -0.50 -9.56 12.92 5.49 0.07 -9.49 16 11 C 0.52 8.77 7.88 -11.59 -0.09 8.68 16 12 O -0.54 -9.15 13.96 5.50 0.08 -9.08 16 13 N -0.58 -9.80 3.31 -170.87 -0.57 -10.36 16 14 C 0.08 1.55 4.92 -3.07 -0.02 1.53 16 15 C 0.18 3.43 2.84 -66.10 -0.19 3.24 16 16 H 0.07 1.27 8.02 -51.92 -0.42 0.86 16 17 N -0.71 -17.03 5.08 -51.65 -0.26 -17.29 16 18 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.09 -1.37 0.87 -152.24 -0.13 -1.50 16 27 C -0.13 -2.18 7.94 37.15 0.30 -1.88 16 28 C -0.13 -1.79 8.68 37.15 0.32 -1.47 16 29 C 0.12 1.73 5.85 -2.40 -0.01 1.72 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.40 7.35 -51.93 -0.38 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.23 6.55 -51.93 -0.34 0.89 16 34 H 0.06 0.70 8.01 -51.92 -0.42 0.28 16 35 H 0.08 0.55 7.77 -51.93 -0.40 0.14 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.11 1.28 5.89 -51.93 -0.31 0.98 16 41 H 0.08 1.84 7.46 -51.93 -0.39 1.45 16 42 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 43 H 0.39 9.82 5.26 -40.82 -0.21 9.60 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 48 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 51 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 52 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -30.86 401.29 -8.92 -39.78 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -9.03 Total: 9.28 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.46 Total: 9.08 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.60 Total: -62.81 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.56 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.86 -8.92 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds