Wall clock time and date at job start Tue Mar 31 2020 19:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 H 1.09005 * 109.99657 * 306.58518 * 3 2 1 5 5 C 1.54320 * 109.77627 * 67.73610 * 3 2 1 6 6 C 1.55158 * 102.86245 * 141.88796 * 5 3 2 7 7 C 1.54909 * 101.58290 * 324.30022 * 6 5 3 8 8 N 1.47025 * 109.88644 * 185.48640 * 3 2 1 9 9 C 1.34770 * 125.64661 * 61.67512 * 8 3 2 10 10 O 1.21357 * 120.00361 * 355.11220 * 9 8 3 11 11 C 1.49452 * 120.00165 * 175.11250 * 9 8 3 12 12 O 1.21346 * 119.99949 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00147 * 179.72470 * 11 9 8 14 14 C 1.47025 * 125.65135 * 0.29923 * 13 11 9 15 15 C 1.54315 * 107.27256 * 181.02479 * 14 13 11 16 16 H 1.09008 * 110.72140 * 263.64970 * 15 14 13 17 17 N 1.46501 * 110.72300 * 140.55778 * 15 14 13 18 18 C 1.36945 * 119.99664 * 86.44783 * 17 15 14 19 19 H 1.08003 * 120.00421 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99418 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00619 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99547 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47325 * 89.99971 * 22 20 18 24 24 H 1.48503 * 109.47118 * 209.99906 * 22 20 18 25 25 H 1.48502 * 109.47294 * 329.99554 * 22 20 18 26 26 C 1.55157 * 102.94729 * 22.19292 * 15 14 13 27 27 C 1.52995 * 111.00188 * 82.57061 * 26 15 14 28 28 C 1.52992 * 111.00720 * 206.38981 * 26 15 14 29 29 C 1.47425 * 125.64949 * 179.97438 * 13 11 9 30 30 H 1.08998 * 109.46767 * 184.95949 * 1 2 3 31 31 H 1.08996 * 109.47097 * 304.95672 * 1 2 3 32 32 H 1.08994 * 109.47119 * 64.96084 * 1 2 3 33 33 H 1.08996 * 109.47559 * 239.99850 * 2 1 3 34 34 H 1.09008 * 109.46839 * 119.99816 * 2 1 3 35 35 H 1.09001 * 110.92281 * 23.47218 * 5 3 2 36 36 H 1.09002 * 110.74316 * 260.21977 * 5 3 2 37 37 H 1.09007 * 111.00115 * 206.23156 * 6 5 3 38 38 H 1.08994 * 111.03736 * 82.39825 * 6 5 3 39 39 H 1.08999 * 110.37129 * 278.17654 * 7 6 5 40 40 H 1.08994 * 110.36470 * 155.84694 * 7 6 5 41 41 H 1.09003 * 109.88281 * 300.44231 * 14 13 11 42 42 H 1.09006 * 109.87826 * 61.60440 * 14 13 11 43 43 H 0.96992 * 120.00176 * 266.45513 * 17 15 14 44 44 H 0.96998 * 120.00587 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.47426 * 60.00240 * 27 26 15 46 46 H 1.09002 * 109.47072 * 180.02562 * 27 26 15 47 47 H 1.09007 * 109.47610 * 300.00371 * 27 26 15 48 48 H 1.09002 * 109.47580 * 59.99740 * 28 26 15 49 49 H 1.09003 * 109.47057 * 180.02562 * 28 26 15 50 50 H 1.09008 * 109.47182 * 299.99922 * 28 26 15 51 51 H 1.09002 * 110.36289 * 274.74799 * 29 13 11 52 52 H 1.09001 * 110.36550 * 37.06578 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5886 1.9974 -0.8225 5 6 1.6953 2.1181 1.3439 6 6 2.9499 2.9864 1.6258 7 6 4.0817 2.0880 1.0676 8 7 3.5042 1.4552 -0.1322 9 6 4.2025 0.9734 -1.1793 10 8 3.6270 0.3967 -2.0788 11 6 5.6857 1.1493 -1.2330 12 8 6.2612 1.7256 -0.3335 13 7 6.3847 0.6626 -2.2775 14 6 5.8171 -0.0529 -3.4297 15 6 6.9916 -0.4392 -4.3530 16 1 7.1121 0.2936 -5.1510 17 7 6.7945 -1.7802 -4.9090 18 6 6.0660 -1.9453 -6.0567 19 1 5.6370 -1.0869 -6.5522 20 6 5.8788 -3.2161 -6.5831 21 7 6.4020 -4.2621 -5.9796 22 14 4.8856 -3.4412 -8.1491 23 1 5.7890 -3.3576 -9.3247 24 1 4.2225 -4.7698 -8.1280 25 1 3.8555 -2.3753 -8.2396 26 6 8.2104 -0.4166 -3.3931 27 6 8.3178 -1.7279 -2.6123 28 6 9.5046 -0.1287 -4.1566 29 6 7.8443 0.7654 -2.4572 30 1 -0.3633 -1.0238 0.0888 31 1 -0.3633 0.5888 0.8422 32 1 -0.3633 0.4349 -0.9310 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5564 1.3748 2.1290 36 1 0.8078 2.7433 1.2453 37 1 3.0763 3.1547 2.6953 38 1 2.9002 3.9324 1.0867 39 1 4.3601 1.3298 1.7996 40 1 4.9477 2.6924 0.7981 41 1 5.3011 -0.9512 -3.0906 42 1 5.1234 0.5963 -3.9640 43 1 7.1800 -2.5511 -4.4641 44 1 6.2709 -5.1501 -6.3473 45 1 8.4375 -2.5573 -3.3095 46 1 9.1801 -1.6850 -1.9469 47 1 7.4122 -1.8758 -2.0239 48 1 9.4286 0.8414 -4.6478 49 1 10.3429 -0.1190 -3.4600 50 1 9.6644 -0.9039 -4.9061 51 1 8.1030 1.7160 -2.9236 52 1 8.3528 0.6613 -1.4987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996494463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:57 Heat of formation + Delta-G solvation = -67.769697 kcal Electronic energy + Delta-G solvation = -31166.991502 eV Core-core repulsion = 27166.120669 eV Total energy + Delta-G solvation = -4000.870833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11799 -40.80255 -39.25917 -38.72641 -35.95053 -34.68596 -34.41315 -32.69137 -32.59095 -29.32542 -28.92551 -28.40671 -28.17488 -26.11694 -25.72159 -24.00927 -23.08370 -22.64487 -21.38797 -20.39549 -19.89346 -19.18510 -18.27252 -18.09458 -17.59872 -17.20323 -16.57563 -16.43455 -15.84346 -15.73716 -15.52591 -15.32954 -14.98034 -14.79546 -14.58731 -14.38951 -14.31475 -14.06886 -13.86701 -13.70658 -13.49299 -13.42650 -13.02030 -13.00389 -12.87034 -12.82416 -12.72053 -12.65529 -12.54080 -12.16474 -12.13471 -12.09793 -11.95542 -11.82191 -11.61256 -11.54167 -11.45676 -11.32355 -10.97937 -10.50382 -9.97779 -9.70868 -9.05007 -7.95336 -5.24077 0.29191 1.14030 1.47037 1.48440 1.56559 2.05366 2.27503 2.56206 3.04576 3.35409 3.48930 3.59378 3.65835 3.75695 3.80695 3.83215 4.12953 4.15973 4.18818 4.24600 4.31123 4.37129 4.42524 4.44692 4.53209 4.57509 4.71051 4.76541 4.80530 4.86845 4.89704 4.92700 4.96679 4.98421 5.04062 5.07180 5.08508 5.10984 5.14752 5.19919 5.22727 5.23216 5.33417 5.41732 5.43446 5.50426 5.53234 6.06934 6.16278 6.26845 6.49499 6.89023 7.34618 8.06636 8.31430 9.27754 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.003554 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.517572 B = 7875.998231 C = 9834.831884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.128 3.872 4 H 0.071 0.929 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.086 3.914 8 N -0.589 5.589 9 C 0.509 3.491 10 O -0.539 6.539 11 C 0.517 3.483 12 O -0.536 6.536 13 N -0.580 5.580 14 C 0.103 3.897 15 C 0.171 3.829 16 H 0.070 0.930 17 N -0.720 5.720 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.274 1.274 26 C -0.077 4.077 27 C -0.126 4.126 28 C -0.123 4.123 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.381 0.619 44 H 0.251 0.749 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.047 0.953 51 H 0.095 0.905 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 16.227 17.691 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.026 3.974 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.162 4.162 7 C -0.035 4.035 8 N -0.323 5.323 9 C 0.292 3.708 10 O -0.416 6.416 11 C 0.300 3.700 12 O -0.415 6.415 13 N -0.313 5.313 14 C -0.023 4.023 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.361 5.361 18 C -0.375 4.375 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.199 1.199 26 C -0.079 4.079 27 C -0.184 4.184 28 C -0.180 4.180 29 C -0.002 4.002 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.217 0.783 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.113 0.887 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.452 16.237 17.511 24.291 hybrid contribution -0.591 -1.183 -1.148 1.751 sum -5.043 15.053 16.363 22.799 Atomic orbital electron populations 1.21673 0.92964 1.02515 1.02664 1.21877 0.98061 0.95979 1.01548 1.22008 0.77983 0.97010 1.00387 0.91135 1.22768 0.99317 0.99446 0.93835 1.22851 0.92470 0.97623 1.03270 1.22880 0.98602 0.96873 0.85191 1.48514 1.08333 1.57040 1.18369 1.19912 0.88122 0.80305 0.82471 1.90812 1.71337 1.41289 1.38190 1.19783 0.87911 0.80279 0.81998 1.90635 1.71145 1.42891 1.36808 1.48353 1.09677 1.53065 1.20162 1.22989 0.98167 0.95098 0.86045 1.21500 0.91428 0.87983 0.93127 0.91219 1.42626 1.62294 1.03348 1.27848 1.19618 1.24228 0.92771 1.00846 0.90734 1.25469 1.02763 0.95445 1.02411 1.69795 1.51164 0.98152 1.42527 0.85227 0.78475 0.76632 0.79954 1.21045 1.22423 1.19889 1.21997 0.96227 0.94743 0.94891 1.21585 1.01270 0.96242 0.99290 1.21612 0.94633 1.01993 0.99779 1.22651 0.77935 0.98922 1.00665 0.92426 0.89927 0.93079 0.94299 0.91618 0.88954 0.87494 0.86925 0.90150 0.90913 0.89017 0.93423 0.92698 0.78303 0.94008 0.93251 0.90126 0.94844 0.91142 0.90191 0.93404 0.88739 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.83 71.98 0.71 -1.70 16 2 C -0.14 -3.15 5.41 30.59 0.17 -2.99 16 3 C 0.13 2.70 2.92 45.34 0.13 2.84 16 4 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 5 C -0.12 -1.35 5.54 31.78 0.18 -1.17 16 6 C -0.12 -1.44 7.08 31.99 0.23 -1.22 16 7 C 0.09 1.72 6.23 86.85 0.54 2.26 16 8 N -0.59 -15.56 3.07 -789.62 -2.42 -17.98 16 9 C 0.51 17.48 7.70 87.27 0.67 18.15 16 10 O -0.54 -22.03 12.92 -3.27 -0.04 -22.07 16 11 C 0.52 17.59 7.88 87.27 0.69 18.27 16 12 O -0.54 -17.70 13.96 -3.23 -0.05 -17.75 16 13 N -0.58 -19.75 3.31 -812.89 -2.69 -22.45 16 14 C 0.10 4.12 4.92 86.73 0.43 4.55 16 15 C 0.17 6.71 2.84 46.18 0.13 6.84 16 16 H 0.07 2.70 8.02 -2.38 -0.02 2.68 16 17 N -0.72 -35.79 5.08 -317.32 -1.61 -37.40 16 18 C -0.24 -13.46 9.98 84.03 0.84 -12.62 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 22 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.08 -2.39 0.87 -50.71 -0.04 -2.43 16 27 C -0.13 -4.16 7.94 71.98 0.57 -3.59 16 28 C -0.12 -3.18 8.68 71.98 0.62 -2.55 16 29 C 0.12 3.34 5.85 86.94 0.51 3.85 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.96 7.35 -2.39 -0.02 0.94 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.24 6.55 -2.39 -0.02 1.23 16 34 H 0.07 1.44 8.01 -2.38 -0.02 1.42 16 35 H 0.09 0.89 7.77 -2.39 -0.02 0.88 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 2.11 5.89 -2.39 -0.01 2.10 16 41 H 0.05 2.25 7.46 -2.39 -0.02 2.23 16 42 H 0.05 2.29 7.70 -2.38 -0.02 2.27 16 43 H 0.38 20.13 5.26 -92.71 -0.49 19.65 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.05 1.88 6.34 -2.38 -0.02 1.87 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.20 7.91 -2.38 -0.02 1.19 16 48 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 51 H 0.09 2.26 7.99 -2.39 -0.02 2.24 16 52 H 0.09 2.36 7.95 -2.39 -0.02 2.34 16 Total: -1.00 -70.63 401.29 2.75 -67.88 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.41 Total: 34.71 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 6.83 Total: 25.02 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -6.44 Total: -136.53 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.09 Total: -39.82 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -70.63 2.75 -67.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996494463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.111 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds