Wall clock time and date at job start Tue Mar 31 2020 20:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47256 * 2 1 4 4 H 1.09000 * 109.46264 * 305.27171 * 3 2 1 5 5 C 1.50695 * 109.47453 * 185.27079 * 3 2 1 6 6 O 1.21284 * 120.00166 * 261.80969 * 5 3 2 7 7 N 1.34782 * 119.99921 * 81.80228 * 5 3 2 8 8 C 1.47017 * 125.64742 * 354.98526 * 7 5 3 9 9 C 1.54329 * 107.40041 * 178.82226 * 8 7 5 10 10 H 1.09002 * 110.71901 * 219.52455 * 9 8 7 11 11 N 1.46493 * 110.71992 * 96.24882 * 9 8 7 12 12 C 1.36941 * 120.00329 * 86.45182 * 11 9 8 13 13 H 1.07996 * 119.99405 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31624 * 119.99794 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00276 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47140 * 89.99944 * 16 14 12 18 18 H 1.48502 * 109.47244 * 209.99812 * 16 14 12 19 19 H 1.48502 * 109.47025 * 329.99857 * 16 14 12 20 20 C 1.55405 * 102.82939 * 337.97627 * 9 8 7 21 21 C 1.53005 * 110.88944 * 277.26971 * 20 9 8 22 22 C 1.52993 * 111.07216 * 153.48458 * 20 9 8 23 23 C 1.47423 * 125.64647 * 174.93474 * 7 5 3 24 24 N 1.46505 * 109.47107 * 65.26743 * 3 2 1 25 25 C 1.46756 * 124.34936 * 239.72625 * 24 3 2 26 26 C 1.54661 * 105.37846 * 162.85358 * 25 24 3 27 27 C 1.54629 * 101.68685 * 25.77277 * 26 25 24 28 28 C 1.34424 * 124.34507 * 60.02751 * 24 3 2 29 29 O 1.21276 * 124.94212 * 0.43301 * 28 24 3 30 30 H 1.09002 * 109.47072 * 60.00875 * 1 2 3 31 31 H 1.09002 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47888 * 300.00080 * 1 2 3 33 33 H 1.08999 * 109.47653 * 239.99422 * 2 1 3 34 34 H 1.09007 * 109.46742 * 119.99449 * 2 1 3 35 35 H 1.08994 * 109.88407 * 298.31793 * 8 7 5 36 36 H 1.08998 * 109.88158 * 59.32851 * 8 7 5 37 37 H 0.97003 * 120.00202 * 266.45244 * 11 9 8 38 38 H 0.96998 * 119.99919 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.46368 * 173.68806 * 21 20 9 40 40 H 1.09000 * 109.46552 * 293.68543 * 21 20 9 41 41 H 1.08994 * 109.47012 * 53.68572 * 21 20 9 42 42 H 1.09000 * 109.47230 * 306.21354 * 22 20 9 43 43 H 1.09003 * 109.46899 * 66.21186 * 22 20 9 44 44 H 1.08997 * 109.47328 * 186.21266 * 22 20 9 45 45 H 1.08995 * 110.36984 * 323.01051 * 23 7 5 46 46 H 1.09006 * 110.36271 * 85.22294 * 23 7 5 47 47 H 1.08991 * 110.25149 * 281.98567 * 25 24 3 48 48 H 1.09000 * 110.24685 * 43.99060 * 25 24 3 49 49 H 1.08999 * 111.19678 * 267.58927 * 26 25 24 50 50 H 1.09004 * 110.85125 * 143.79165 * 26 25 24 51 51 H 1.09000 * 110.48682 * 216.30681 * 27 26 25 52 52 H 1.08998 * 110.48816 * 93.65642 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9828 -0.8391 5 6 3.5413 1.4446 -0.1305 6 8 4.2357 1.5631 0.8568 7 7 4.1123 1.3145 -1.3444 8 6 3.3986 1.0599 -2.6042 9 6 4.4522 1.0178 -3.7312 10 1 4.0770 1.5101 -4.6284 11 7 4.8454 -0.3631 -4.0218 12 6 4.1188 -1.1093 -4.9109 13 1 3.2562 -0.6795 -5.3982 14 6 4.4918 -2.4176 -5.1867 15 7 3.7937 -3.1346 -6.0417 16 14 5.9843 -3.1607 -4.3444 17 1 5.5649 -3.8100 -3.0764 18 1 6.6040 -4.1725 -5.2373 19 1 6.9705 -2.0902 -4.0497 20 6 5.6415 1.8108 -3.1215 21 6 5.4376 3.3175 -3.2927 22 6 6.9708 1.3669 -3.7352 23 6 5.5560 1.4051 -1.6289 24 7 1.6579 2.0956 1.2546 25 6 0.8182 3.2961 1.3409 26 6 0.3316 3.3516 2.8079 27 6 1.4527 2.5774 3.5393 28 6 2.0363 1.6755 2.4741 29 8 2.7431 0.7137 2.6891 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.8772 0.1044 -2.5483 36 1 2.6844 1.8611 -2.7942 37 1 5.6204 -0.7490 -3.5844 38 1 4.0541 -4.0490 -6.2341 39 1 6.2242 3.8532 -2.7614 40 1 5.4767 3.5713 -4.3520 41 1 4.4667 3.6012 -2.8867 42 1 7.0725 0.2860 -3.6388 43 1 6.9937 1.6414 -4.7898 44 1 7.7932 1.8571 -3.2142 45 1 6.0193 2.1667 -1.0016 46 1 6.0355 0.4394 -1.4685 47 1 1.4033 4.1838 1.1008 48 1 -0.0330 3.2104 0.6655 49 1 -0.6289 2.8496 2.9238 50 1 0.2758 4.3819 3.1595 51 1 1.0378 1.9853 4.3550 52 1 2.2104 3.2659 3.9133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996635632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:59 Heat of formation + Delta-G solvation = -47.629954 kcal Electronic energy + Delta-G solvation = -31836.060428 eV Core-core repulsion = 27836.062920 eV Total energy + Delta-G solvation = -3999.997508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89693 -39.75785 -37.85999 -36.31300 -34.86424 -34.05028 -33.18060 -31.13356 -31.12222 -28.30846 -27.97461 -27.62727 -26.91340 -25.54643 -23.67373 -22.30718 -22.06724 -21.48268 -20.08411 -19.12891 -18.37208 -17.65416 -17.25147 -16.64853 -16.19046 -15.78426 -15.32918 -15.03470 -14.61689 -14.46217 -14.31513 -13.89655 -13.77705 -13.61999 -13.36989 -13.16903 -13.09559 -12.85267 -12.73448 -12.64002 -12.51143 -12.25263 -12.12585 -11.89894 -11.79708 -11.71209 -11.62897 -11.30391 -11.29470 -11.18544 -10.99619 -10.96995 -10.63290 -10.53448 -10.30055 -9.98608 -9.77744 -9.62899 -9.50638 -9.05647 -8.63468 -8.27861 -7.39620 -5.86448 -3.23369 2.59155 2.80634 2.89093 3.31864 3.36217 3.41894 3.42941 4.21338 4.24694 4.50688 4.51569 4.56766 4.78736 4.83582 4.89894 4.92675 4.94763 5.05472 5.19576 5.25562 5.28758 5.31549 5.42353 5.43846 5.45789 5.53400 5.56853 5.61466 5.68413 5.72180 5.78876 5.81874 5.91911 5.94580 6.02474 6.04033 6.08042 6.12263 6.18793 6.20633 6.29525 6.42084 6.46398 6.57452 6.65688 6.69255 7.15430 7.81495 7.88062 8.27635 8.32452 8.46447 9.09463 9.82285 10.00701 11.31196 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003696 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.110518 B = 7573.481847 C = 8368.690808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.153 3.847 4 H 0.106 0.894 5 C 0.513 3.487 6 O -0.524 6.524 7 N -0.608 5.608 8 C 0.069 3.931 9 C 0.186 3.814 10 H 0.079 0.921 11 N -0.737 5.737 12 C -0.250 4.250 13 H 0.093 0.907 14 C 0.012 3.988 15 N -0.929 5.929 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.130 4.130 23 C 0.122 3.878 24 N -0.611 5.611 25 C 0.104 3.896 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.521 3.479 29 O -0.503 6.503 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 17.071 12.735 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.046 3.954 4 H 0.124 0.876 5 C 0.299 3.701 6 O -0.399 6.399 7 N -0.343 5.343 8 C -0.057 4.057 9 C 0.075 3.925 10 H 0.097 0.903 11 N -0.379 5.379 12 C -0.380 4.380 13 H 0.110 0.890 14 C -0.184 4.184 15 N -0.576 5.576 16 Si 0.708 3.292 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.093 4.093 21 C -0.185 4.185 22 C -0.187 4.187 23 C 0.000 4.000 24 N -0.347 5.347 25 C -0.019 4.019 26 C -0.167 4.167 27 C -0.195 4.195 28 C 0.308 3.692 29 O -0.376 6.376 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.199 0.801 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.116 0.884 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.419 16.459 13.216 22.063 hybrid contribution 0.985 -0.670 0.404 1.258 sum -5.434 15.789 13.620 21.548 Atomic orbital electron populations 1.21676 0.94621 1.02146 1.01476 1.21860 0.96917 0.93975 1.04791 1.20780 0.92011 0.95950 0.86662 0.87602 1.20478 0.90330 0.77232 0.82018 1.90735 1.64130 1.49095 1.35967 1.48410 1.08264 1.70652 1.06935 1.23275 0.97122 1.00844 0.84440 1.21193 0.90710 0.86351 0.94257 0.90326 1.42825 1.33681 1.09539 1.51898 1.19024 1.08577 0.93884 1.16479 0.88958 1.24632 0.98401 0.96571 0.98831 1.69689 1.40825 1.09739 1.37309 0.86677 0.83871 0.79232 0.79409 1.20986 1.21598 1.20219 1.22090 0.97248 0.95848 0.94161 1.21659 1.01388 0.93734 1.01738 1.21635 0.94409 1.01936 1.00748 1.22216 0.81679 1.00974 0.95161 1.48001 1.52134 1.29090 1.05456 1.22109 0.94339 0.87553 0.97904 1.22594 0.98514 1.01727 0.93887 1.22325 0.99373 0.99572 0.98269 1.20694 0.79646 0.84893 0.83955 1.90738 1.35517 1.27909 1.83392 0.92530 0.92156 0.92943 0.89613 0.89891 0.90050 0.92507 0.80130 0.92927 0.92827 0.92112 0.92756 0.91788 0.91786 0.93255 0.91220 0.91855 0.91324 0.90302 0.89946 0.89331 0.88354 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.80 37.15 0.36 -1.19 16 2 C -0.14 -1.93 5.32 -26.73 -0.14 -2.07 16 3 C 0.15 2.07 2.07 -69.08 -0.14 1.92 16 4 H 0.11 1.17 7.34 -51.93 -0.38 0.79 16 5 C 0.51 8.82 7.00 -10.99 -0.08 8.75 16 6 O -0.52 -10.95 14.33 -16.21 -0.23 -11.19 16 7 N -0.61 -9.92 3.31 -170.52 -0.57 -10.48 16 8 C 0.07 1.08 5.56 -3.06 -0.02 1.06 16 9 C 0.19 3.19 2.88 -65.96 -0.19 3.00 16 10 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 11 N -0.74 -15.96 4.40 -51.52 -0.23 -16.19 16 12 C -0.25 -6.52 10.46 -15.06 -0.16 -6.68 16 13 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 14 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 15 N -0.93 -28.03 13.97 55.49 0.78 -27.26 16 16 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 20 C -0.09 -1.34 0.83 -152.22 -0.13 -1.47 16 21 C -0.13 -1.52 8.60 37.16 0.32 -1.20 16 22 C -0.13 -1.91 8.35 37.15 0.31 -1.60 16 23 C 0.12 1.98 5.80 -2.53 -0.01 1.96 16 24 N -0.61 -7.47 2.23 -166.05 -0.37 -7.84 16 25 C 0.10 0.79 7.31 -3.03 -0.02 0.77 16 26 C -0.13 -0.76 7.19 -25.00 -0.18 -0.94 16 27 C -0.16 -1.41 6.86 -26.74 -0.18 -1.59 16 28 C 0.52 7.52 6.76 -10.86 -0.07 7.45 16 29 O -0.50 -9.82 14.62 -16.20 -0.24 -10.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.54 7.76 -51.93 -0.40 0.13 16 33 H 0.09 1.30 6.64 -51.93 -0.34 0.96 16 34 H 0.08 1.41 6.64 -51.92 -0.34 1.06 16 35 H 0.08 1.45 6.69 -51.93 -0.35 1.10 16 36 H 0.06 0.74 7.73 -51.93 -0.40 0.33 16 37 H 0.36 8.05 3.88 -40.82 -0.16 7.89 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.63 7.81 -51.93 -0.41 0.23 16 42 H 0.06 1.09 6.18 -51.93 -0.32 0.77 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 46 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 400.47 15.07 6.03 6.03 Total: -1.00 -34.99 400.47 -8.99 -43.98 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -9.02 Total: 7.65 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.43 Total: 8.42 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.39 Total: -61.77 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.47 Total: -21.24 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.99 -8.99 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996635632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.651 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds