Wall clock time and date at job start Tue Mar 31 2020 20:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 H 1.08994 * 109.47232 * 54.77398 * 3 2 1 5 5 C 1.50702 * 109.46790 * 174.77560 * 3 2 1 6 6 O 1.21282 * 119.99893 * 98.43497 * 5 3 2 7 7 N 1.34782 * 120.00045 * 278.43079 * 5 3 2 8 8 C 1.47018 * 125.64396 * 4.96574 * 7 5 3 9 9 C 1.54327 * 107.26871 * 181.02316 * 8 7 5 10 10 H 1.08998 * 110.71988 * 263.64909 * 9 8 7 11 11 N 1.46503 * 110.72152 * 140.55311 * 9 8 7 12 12 C 1.36932 * 119.99822 * 86.45565 * 11 9 8 13 13 H 1.08003 * 120.00392 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99849 * 180.02562 * 12 11 9 15 15 N 1.31616 * 120.00375 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99950 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47183 * 90.00129 * 16 14 12 18 18 H 1.48501 * 109.47486 * 209.99627 * 16 14 12 19 19 H 1.48497 * 109.47235 * 330.00115 * 16 14 12 20 20 C 1.55157 * 102.94051 * 22.19013 * 9 8 7 21 21 C 1.53004 * 111.00395 * 82.57673 * 20 9 8 22 22 C 1.53002 * 111.00686 * 206.38504 * 20 9 8 23 23 C 1.47420 * 125.64891 * 184.65425 * 7 5 3 24 24 N 1.46497 * 109.47063 * 294.77284 * 3 2 1 25 25 C 1.46766 * 124.35139 * 120.00125 * 24 3 2 26 26 C 1.54470 * 105.47612 * 197.03720 * 25 24 3 27 27 C 1.54779 * 101.69482 * 334.39256 * 26 25 24 28 28 C 1.34419 * 124.35016 * 300.02534 * 24 3 2 29 29 O 1.21278 * 124.94572 * 359.53518 * 28 24 3 30 30 H 1.09003 * 109.47091 * 299.99427 * 1 2 3 31 31 H 1.08999 * 109.47378 * 59.99934 * 1 2 3 32 32 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46884 * 239.99824 * 2 1 3 34 34 H 1.08999 * 109.47378 * 120.00066 * 2 1 3 35 35 H 1.09005 * 109.88172 * 300.43244 * 8 7 5 36 36 H 1.08999 * 109.88949 * 61.45122 * 8 7 5 37 37 H 0.97000 * 119.99875 * 266.45609 * 11 9 8 38 38 H 0.96997 * 120.00630 * 179.97438 * 15 14 12 39 39 H 1.08991 * 109.47251 * 59.99911 * 21 20 9 40 40 H 1.09004 * 109.47149 * 180.02562 * 21 20 9 41 41 H 1.09002 * 109.46944 * 299.99715 * 21 20 9 42 42 H 1.09006 * 109.46863 * 59.99515 * 22 20 9 43 43 H 1.08993 * 109.47309 * 180.02562 * 22 20 9 44 44 H 1.09004 * 109.46983 * 300.00665 * 22 20 9 45 45 H 1.08997 * 110.36878 * 274.74848 * 23 7 5 46 46 H 1.09010 * 110.36474 * 37.07367 * 23 7 5 47 47 H 1.09005 * 110.24349 * 316.04182 * 25 24 3 48 48 H 1.09009 * 110.24319 * 77.94564 * 25 24 3 49 49 H 1.09001 * 110.97114 * 92.70106 * 26 25 24 50 50 H 1.09003 * 110.96799 * 216.42870 * 26 25 24 51 51 H 1.09001 * 110.61324 * 266.40009 * 27 26 25 52 52 H 1.09002 * 110.43022 * 143.70930 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9826 0.8394 5 6 3.5414 1.4444 0.1294 6 8 4.2350 1.5677 -0.8579 7 7 4.1135 1.3093 1.3423 8 6 3.4007 1.0500 2.6016 9 6 4.4581 0.9996 3.7246 10 1 4.7475 -0.0298 3.9358 11 7 3.9591 1.6548 4.9362 12 6 3.2168 0.9452 5.8420 13 1 2.9988 -0.0974 5.6631 14 6 2.7436 1.5661 6.9898 15 7 3.0087 2.8367 7.2077 16 14 1.7303 0.5982 8.2252 17 1 2.6327 -0.0188 9.2304 18 1 0.7788 1.5109 8.9085 19 1 0.9741 -0.4669 7.5190 20 6 5.6453 1.7947 3.1198 21 6 5.4442 3.3009 3.2983 22 6 6.9741 1.3457 3.7310 23 6 5.5581 1.3905 1.6247 24 7 1.6571 2.0958 -1.2541 25 6 0.8125 3.2930 -1.3400 26 6 0.3293 3.3523 -2.8060 27 6 1.4537 2.5808 -3.5383 28 6 2.0337 1.6755 -2.4740 29 8 2.7400 0.7135 -2.6900 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.6900 1.8530 2.7975 36 1 2.8754 0.0969 2.5410 37 1 4.1545 2.5912 5.0968 38 1 2.6777 3.2707 8.0096 39 1 5.3721 3.5345 4.3605 40 1 6.2904 3.8343 2.8652 41 1 4.5266 3.6070 2.7959 42 1 7.1259 0.2849 3.5312 43 1 7.7892 1.9193 3.2898 44 1 6.9537 1.5132 4.8079 45 1 6.0314 0.4221 1.4629 46 1 6.0248 2.1512 0.9987 47 1 -0.0391 3.2030 -0.6654 48 1 1.3934 4.1827 -1.0965 49 1 -0.6315 2.8506 -2.9207 50 1 0.2734 4.3828 -3.1568 51 1 2.2131 3.2693 -3.9088 52 1 1.0400 1.9914 -4.3566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996635637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:05 Heat of formation + Delta-G solvation = -52.118058 kcal Electronic energy + Delta-G solvation = -31605.828531 eV Core-core repulsion = 27605.636404 eV Total energy + Delta-G solvation = -4000.192127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87376 -39.66553 -37.78637 -36.29845 -34.87314 -34.11092 -33.05078 -31.13025 -30.85024 -28.02354 -27.62904 -27.43981 -27.01032 -25.50510 -23.96044 -22.35248 -22.03844 -21.52430 -20.03017 -18.83476 -18.30138 -17.32702 -17.20033 -16.63695 -16.19410 -15.75011 -15.33741 -15.06923 -14.59666 -14.34325 -14.09776 -13.88367 -13.73452 -13.66733 -13.29402 -13.17324 -13.07451 -12.84024 -12.73437 -12.68502 -12.36378 -12.23010 -12.09626 -11.78598 -11.69599 -11.55487 -11.32154 -11.25833 -11.19837 -11.07635 -10.99155 -10.93630 -10.57005 -10.51287 -10.25676 -9.91307 -9.78423 -9.66708 -9.49974 -9.03950 -8.61732 -8.25472 -7.12498 -5.89329 -3.19585 2.59278 2.82090 2.91904 3.35891 3.41079 3.43201 3.43840 4.23985 4.29078 4.47774 4.57870 4.62372 4.80706 4.89128 4.92392 4.98300 5.06783 5.18262 5.22616 5.29664 5.34175 5.42564 5.46384 5.48157 5.56994 5.59392 5.66845 5.69171 5.75797 5.78443 5.83834 5.89133 5.96349 5.98878 6.02329 6.11598 6.14641 6.25263 6.30377 6.35872 6.40176 6.49217 6.59976 6.64499 6.73910 6.87041 7.17444 7.59933 7.83246 8.27720 8.29301 8.47394 9.41314 9.95488 10.30748 11.32749 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003484 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.195504 B = 8034.552115 C = 9156.919143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.150 3.850 4 H 0.109 0.891 5 C 0.514 3.486 6 O -0.525 6.525 7 N -0.612 5.612 8 C 0.072 3.928 9 C 0.181 3.819 10 H 0.066 0.934 11 N -0.712 5.712 12 C -0.248 4.248 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.086 4.086 21 C -0.131 4.131 22 C -0.129 4.129 23 C 0.121 3.879 24 N -0.609 5.609 25 C 0.102 3.898 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.522 3.478 29 O -0.506 6.506 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.390 0.610 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 1.421 -16.257 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.043 3.957 4 H 0.127 0.873 5 C 0.300 3.700 6 O -0.400 6.400 7 N -0.346 5.346 8 C -0.054 4.054 9 C 0.069 3.931 10 H 0.084 0.916 11 N -0.354 5.354 12 C -0.379 4.379 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.737 3.263 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.087 4.087 21 C -0.188 4.188 22 C -0.187 4.187 23 C -0.002 4.002 24 N -0.345 5.345 25 C -0.021 4.021 26 C -0.167 4.167 27 C -0.195 4.195 28 C 0.309 3.691 29 O -0.380 6.380 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.120 0.880 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.493 0.844 -16.785 17.165 hybrid contribution -0.644 -0.074 0.972 1.168 sum -4.137 0.770 -15.813 16.364 Atomic orbital electron populations 1.21698 0.94613 1.01990 1.01828 1.21829 0.96963 0.94165 1.04254 1.20796 0.92157 0.95846 0.86891 0.87318 1.20476 0.90287 0.77199 0.82063 1.90730 1.64185 1.49106 1.36018 1.48480 1.08440 1.70657 1.07055 1.23367 0.97930 1.00488 0.83637 1.21197 0.89576 0.96029 0.86312 0.91640 1.42540 1.62309 1.11852 1.18681 1.19255 1.25131 0.94236 0.99256 0.91032 1.24733 1.01149 0.95998 0.98482 1.69647 1.50125 1.09856 1.28117 0.86216 0.79759 0.78812 0.81521 1.21640 1.21763 1.20668 1.22012 0.96755 0.96756 0.93198 1.21630 1.00822 0.93509 1.02839 1.21647 0.94844 1.00447 1.01733 1.22304 0.81444 1.00855 0.95600 1.47981 1.51886 1.29226 1.05393 1.22104 0.94388 0.87688 0.97875 1.22589 0.98427 1.01815 0.93879 1.22351 0.99391 0.99555 0.98222 1.20690 0.79559 0.84865 0.83963 1.90715 1.35720 1.28094 1.83444 0.92324 0.92806 0.92313 0.89918 0.90126 0.90981 0.92275 0.77316 0.93349 0.90881 0.93361 0.92873 0.92801 0.93116 0.91327 0.91810 0.91149 0.90207 0.91182 0.89976 0.89273 0.88031 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.80 37.16 0.36 -1.15 16 2 C -0.13 -1.75 5.32 -26.73 -0.14 -1.89 16 3 C 0.15 2.08 2.07 -69.08 -0.14 1.93 16 4 H 0.11 1.37 7.35 -51.93 -0.38 0.99 16 5 C 0.51 8.80 7.00 -10.98 -0.08 8.73 16 6 O -0.52 -10.82 14.34 -16.16 -0.23 -11.05 16 7 N -0.61 -9.95 3.31 -170.38 -0.56 -10.52 16 8 C 0.07 1.19 5.64 -3.06 -0.02 1.17 16 9 C 0.18 3.28 2.85 -66.09 -0.19 3.10 16 10 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 11 N -0.71 -15.98 5.08 -51.65 -0.26 -16.25 16 12 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 13 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 15 N -0.93 -26.24 13.06 55.49 0.72 -25.52 16 16 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.09 -1.35 0.87 -152.24 -0.13 -1.48 16 21 C -0.13 -2.08 7.94 37.16 0.30 -1.79 16 22 C -0.13 -1.84 8.68 37.16 0.32 -1.52 16 23 C 0.12 1.89 5.83 -2.42 -0.01 1.87 16 24 N -0.61 -7.70 2.23 -166.16 -0.37 -8.07 16 25 C 0.10 0.88 7.30 -3.13 -0.02 0.85 16 26 C -0.13 -0.83 7.19 -25.02 -0.18 -1.01 16 27 C -0.15 -1.43 6.87 -26.66 -0.18 -1.62 16 28 C 0.52 7.50 6.76 -10.86 -0.07 7.42 16 29 O -0.51 -9.59 14.63 -16.16 -0.24 -9.83 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.54 7.76 -51.93 -0.40 0.14 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.08 1.28 6.64 -51.93 -0.34 0.94 16 34 H 0.08 1.06 6.61 -51.93 -0.34 0.71 16 35 H 0.07 1.27 7.63 -51.93 -0.40 0.87 16 36 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 37 H 0.39 9.29 5.26 -40.82 -0.21 9.08 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 1.31 6.34 -51.93 -0.33 0.98 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 42 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 46 H 0.07 1.12 8.00 -51.92 -0.42 0.71 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -32.86 403.16 -9.36 -42.22 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -9.04 Total: 8.95 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.44 Total: 7.90 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.47 Total: -60.35 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.47 Total: -20.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.86 -9.36 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996635637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.896 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds