Wall clock time and date at job start Tue Mar 31 2020 19:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.50701 * 109.47012 * 239.99679 * 2 1 3 5 5 N 1.34780 * 119.99928 * 60.00451 * 4 2 1 6 6 O 1.21277 * 120.00099 * 239.99805 * 4 2 1 7 7 C 1.50696 * 109.47110 * 120.00144 * 2 1 3 8 8 O 1.21287 * 120.00290 * 121.42657 * 7 2 1 9 9 N 1.34784 * 119.99862 * 301.42129 * 7 2 1 10 10 C 1.46923 * 120.62957 * 174.70411 * 9 7 2 11 11 C 1.53193 * 108.77842 * 233.59103 * 10 9 7 12 12 C 1.53048 * 109.30821 * 305.36594 * 11 10 9 13 13 C 1.52995 * 109.45911 * 181.38220 * 12 11 10 14 14 H 1.08997 * 110.00327 * 305.16976 * 13 12 11 15 15 C 1.54333 * 109.99450 * 184.12767 * 13 12 11 16 16 C 1.55156 * 103.02324 * 218.66684 * 15 13 12 17 17 C 1.54916 * 101.58019 * 35.30749 * 16 15 13 18 18 N 1.47032 * 109.88171 * 66.26060 * 13 12 11 19 19 C 1.36931 * 125.64717 * 298.39713 * 18 13 12 20 20 H 1.08000 * 119.99754 * 138.15717 * 19 18 13 21 21 C 1.38811 * 120.00426 * 318.42799 * 19 18 13 22 22 N 1.31612 * 120.00466 * 168.97048 * 21 19 18 23 23 Si 1.86801 * 119.99719 * 348.97819 * 21 19 18 24 24 H 1.48497 * 109.47559 * 87.80019 * 23 21 19 25 25 H 1.48501 * 109.47074 * 207.80896 * 23 21 19 26 26 H 1.48500 * 109.46980 * 327.80213 * 23 21 19 27 27 C 1.53041 * 109.53735 * 61.36615 * 12 11 10 28 28 C 1.46917 * 120.62839 * 354.68452 * 9 7 2 29 29 H 1.09001 * 109.47157 * 299.85720 * 1 2 3 30 30 H 1.09003 * 109.47568 * 59.85866 * 1 2 3 31 31 H 1.09000 * 109.47233 * 179.85837 * 1 2 3 32 32 H 1.09006 * 109.47094 * 195.72499 * 3 2 1 33 33 H 1.09002 * 109.46983 * 315.71591 * 3 2 1 34 34 H 1.08994 * 109.47543 * 75.72180 * 3 2 1 35 35 H 0.97004 * 119.99763 * 359.97438 * 5 4 2 36 36 H 0.97003 * 120.00259 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.58875 * 113.79836 * 10 9 7 38 38 H 1.09003 * 109.70785 * 353.44775 * 10 9 7 39 39 H 1.08996 * 109.50179 * 185.41904 * 11 10 9 40 40 H 1.09003 * 109.49802 * 65.31178 * 11 10 9 41 41 H 1.08995 * 109.45718 * 301.35661 * 12 11 10 42 42 H 1.09001 * 110.84955 * 100.20088 * 15 13 12 43 43 H 1.08999 * 110.66208 * 337.05318 * 15 13 12 44 44 H 1.08997 * 111.00551 * 277.23451 * 16 15 13 45 45 H 1.09004 * 111.00370 * 153.37730 * 16 15 13 46 46 H 1.08994 * 110.36622 * 204.14912 * 17 16 15 47 47 H 1.09003 * 110.45789 * 81.87344 * 17 16 15 48 48 H 0.96995 * 120.00300 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.50114 * 58.58604 * 27 12 11 50 50 H 1.08999 * 109.49557 * 178.68160 * 27 12 11 51 51 H 1.08997 * 109.58880 * 246.19250 * 28 9 7 52 52 H 1.08998 * 109.59129 * 6.62386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7295 -1.6965 -1.1191 7 6 2.0323 -0.7104 1.2304 8 8 2.7508 -1.6812 1.1194 9 7 1.6832 -0.2669 2.4544 10 6 2.0682 -1.0142 3.6593 11 6 0.8120 -1.2875 4.4925 12 6 0.0947 0.0346 4.7752 13 6 -1.1418 -0.2304 5.6363 14 1 -1.7786 -0.9733 5.1558 15 6 -1.9317 1.0793 5.8427 16 6 -2.4026 0.9748 7.3174 17 6 -1.1991 0.2572 7.9781 18 7 -0.7327 -0.7074 6.9655 19 6 -0.0296 -1.8545 7.2202 20 1 0.7649 -1.8497 7.9518 21 6 -0.3341 -3.0221 6.5341 22 7 0.4701 -4.0609 6.6133 23 14 -1.8855 -3.1190 5.4981 24 1 -1.5967 -2.6275 4.1269 25 1 -2.3491 -4.5282 5.4316 26 1 -2.9442 -2.2782 6.1124 27 6 -0.3325 0.6778 3.4539 28 6 0.9108 0.9733 2.6089 29 1 -0.3633 0.5116 0.8913 30 1 -0.3634 0.5160 -0.8887 31 1 -0.3634 -1.0276 -0.0025 32 1 3.0938 1.4552 -0.2785 33 1 1.4675 2.0302 -0.7176 34 1 1.9222 1.8695 0.9958 35 1 1.1488 0.5385 -2.5436 36 1 2.0297 -0.7075 -3.2466 37 1 2.7740 -0.4251 4.2448 38 1 2.5299 -1.9594 3.3737 39 1 1.0952 -1.7564 5.4348 40 1 0.1467 -1.9516 3.9405 41 1 0.7689 0.7073 5.3051 42 1 -2.7860 1.1277 5.1676 43 1 -1.2837 1.9449 5.7052 44 1 -3.3079 0.3730 7.3967 45 1 -2.5535 1.9638 7.7504 46 1 -1.5174 -0.2644 8.8807 47 1 -0.4107 0.9725 8.2122 48 1 0.2575 -4.8766 6.1335 49 1 -0.9870 -0.0047 2.9118 50 1 -0.8638 1.6076 3.6570 51 1 1.5221 1.7246 3.1088 52 1 0.6075 1.3396 1.6282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004466101.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:10 Heat of formation + Delta-G solvation = -26.600288 kcal Electronic energy + Delta-G solvation = -32473.031710 eV Core-core repulsion = 28473.946117 eV Total energy + Delta-G solvation = -3999.085593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.07306 -39.23206 -38.17034 -36.38011 -35.29919 -33.38515 -32.84189 -32.37940 -30.47734 -29.83615 -27.99147 -27.76797 -25.20749 -24.41856 -23.65421 -22.90049 -21.57938 -20.22276 -19.96779 -19.79487 -18.86668 -17.53550 -16.87769 -16.73383 -15.90083 -15.58165 -15.40975 -15.24623 -14.93590 -14.70170 -14.29679 -13.96893 -13.69663 -13.53516 -13.42871 -13.24717 -13.10292 -12.89701 -12.55848 -12.37836 -12.24753 -12.14994 -12.01142 -11.77877 -11.50572 -11.41186 -11.31562 -11.03958 -10.85016 -10.65278 -10.56835 -10.36348 -10.25546 -10.00993 -9.95879 -9.77254 -9.72461 -9.56881 -9.28143 -9.05202 -8.34238 -8.19382 -6.71079 -6.02203 -3.49753 2.56349 2.90415 3.00834 3.29914 3.44194 3.48037 3.51800 4.25725 4.44023 4.48195 4.68817 4.76804 4.84837 5.01924 5.15743 5.16106 5.20493 5.25073 5.32712 5.36154 5.40233 5.45463 5.46774 5.55935 5.66668 5.77514 5.81899 5.84961 5.91451 5.95261 6.05704 6.12605 6.19993 6.24213 6.34223 6.36890 6.41862 6.54934 6.64651 6.65635 6.71758 6.85502 6.86663 6.92282 7.15709 7.21294 7.61773 7.70614 8.01670 8.19518 8.33458 8.51080 8.85940 9.62402 10.27252 11.11811 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.004045 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.655708 B = 6919.744121 C = 7685.766367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.155 4.155 4 C 0.525 3.475 5 N -0.859 5.859 6 O -0.493 6.493 7 C 0.519 3.481 8 O -0.500 6.500 9 N -0.606 5.606 10 C 0.116 3.884 11 C -0.151 4.151 12 C -0.081 4.081 13 C 0.150 3.850 14 H 0.032 0.968 15 C -0.126 4.126 16 C -0.137 4.137 17 C 0.130 3.870 18 N -0.604 5.604 19 C -0.251 4.251 20 H 0.081 0.919 21 C 0.048 3.952 22 N -0.900 5.900 23 Si 0.886 3.114 24 H -0.276 1.276 25 H -0.306 1.306 26 H -0.274 1.274 27 C -0.138 4.138 28 C 0.088 3.912 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.397 0.603 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.024 0.976 48 H 0.266 0.734 49 H 0.061 0.939 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 17.108 -13.816 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.111 4.111 3 C -0.212 4.212 4 C 0.307 3.693 5 N -0.425 5.425 6 O -0.364 6.364 7 C 0.303 3.697 8 O -0.373 6.373 9 N -0.340 5.340 10 C -0.005 4.005 11 C -0.188 4.188 12 C -0.101 4.101 13 C 0.044 3.956 14 H 0.050 0.950 15 C -0.164 4.164 16 C -0.176 4.176 17 C 0.005 3.995 18 N -0.330 5.330 19 C -0.379 4.379 20 H 0.099 0.901 21 C -0.154 4.154 22 N -0.541 5.541 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.234 1.234 26 H -0.199 1.199 27 C -0.176 4.176 28 C -0.035 4.035 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.458 15.623 -13.584 20.848 hybrid contribution -1.193 0.100 -1.139 1.652 sum -3.651 15.722 -14.722 21.846 Atomic orbital electron populations 1.22233 0.90733 1.04150 1.04128 1.20842 0.98728 0.97726 0.93796 1.22214 1.02227 0.92089 1.04714 1.19930 0.80430 0.84518 0.84430 1.43820 1.56818 1.34044 1.07781 1.90906 1.35154 1.24470 1.85829 1.19772 0.81401 0.84764 0.83729 1.90832 1.35066 1.26077 1.85339 1.48143 1.54721 1.25220 1.05961 1.21780 0.98112 0.96622 0.83982 1.22655 0.95323 0.97321 1.03519 1.21449 0.98230 0.97061 0.93381 1.21263 0.93126 0.92879 0.88348 0.95047 1.22599 0.99026 0.98095 0.96680 1.22768 0.99136 0.99617 0.96072 1.21721 0.92636 0.91994 0.93173 1.44645 1.65445 1.23727 0.99151 1.18389 1.11554 0.83840 1.24096 0.90123 1.25490 0.96599 0.94740 0.98552 1.69745 1.36700 1.03983 1.43661 0.86973 0.85471 0.75207 0.80536 1.20361 1.23433 1.19947 1.22139 0.96723 1.01109 0.97661 1.22332 0.93397 0.86596 1.01157 0.89138 0.91113 0.91362 0.91480 0.90847 0.89401 0.77487 0.76808 0.92063 0.89595 0.84299 0.92733 0.91490 0.92285 0.91469 0.91948 0.92029 0.93503 0.95809 0.92380 0.92006 0.91007 0.91445 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 7.99 37.16 0.30 -1.19 16 2 C -0.10 -1.25 0.59 -156.82 -0.09 -1.34 16 3 C -0.16 -1.27 7.89 37.16 0.29 -0.97 16 4 C 0.53 7.08 6.68 -10.98 -0.07 7.01 16 5 N -0.86 -6.73 8.67 31.22 0.27 -6.46 16 6 O -0.49 -9.62 15.02 -18.95 -0.28 -9.90 16 7 C 0.52 8.95 6.48 -10.98 -0.07 8.88 16 8 O -0.50 -11.24 13.62 -18.96 -0.26 -11.50 16 9 N -0.61 -9.69 2.97 -172.77 -0.51 -10.20 16 10 C 0.12 2.20 6.41 -3.71 -0.02 2.18 16 11 C -0.15 -3.17 3.84 -26.61 -0.10 -3.27 16 12 C -0.08 -1.44 1.78 -90.58 -0.16 -1.60 16 13 C 0.15 2.94 1.98 -66.94 -0.13 2.81 16 14 H 0.03 0.71 3.49 -51.93 -0.18 0.53 16 15 C -0.13 -1.95 5.32 -24.89 -0.13 -2.08 16 16 C -0.14 -2.17 7.09 -24.58 -0.17 -2.34 16 17 C 0.13 2.47 7.23 -2.53 -0.02 2.46 16 18 N -0.60 -13.62 2.61 -162.56 -0.42 -14.04 16 19 C -0.25 -6.64 8.36 -15.06 -0.13 -6.76 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.05 1.32 3.61 -17.43 -0.06 1.26 16 22 N -0.90 -26.45 13.97 55.49 0.78 -25.67 16 23 Si 0.89 22.35 23.11 -169.99 -3.93 18.43 16 24 H -0.28 -6.76 5.68 56.52 0.32 -6.43 16 25 H -0.31 -8.00 7.11 56.52 0.40 -7.59 16 26 H -0.27 -6.83 7.02 56.52 0.40 -6.44 16 27 C -0.14 -1.87 4.76 -26.61 -0.13 -2.00 16 28 C 0.09 1.04 3.95 -3.71 -0.01 1.02 16 29 H 0.09 0.82 4.12 -51.93 -0.21 0.61 16 30 H 0.07 0.42 7.57 -51.93 -0.39 0.02 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 33 H 0.07 0.34 7.97 -51.93 -0.41 -0.07 16 34 H 0.09 0.68 4.79 -51.93 -0.25 0.44 16 35 H 0.40 1.71 8.07 -40.82 -0.33 1.38 16 36 H 0.40 2.76 8.93 -40.82 -0.36 2.40 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.84 7.05 -51.93 -0.37 1.48 16 39 H 0.14 3.45 4.31 -51.93 -0.22 3.23 16 40 H 0.05 1.27 5.60 -51.93 -0.29 0.98 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 50 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 51 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 52 H 0.10 0.86 2.73 -51.93 -0.14 0.72 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -35.97 367.75 -7.70 -43.67 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.16 Total: 6.08 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.72 Total: 4.06 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.11 Total: -56.38 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.54 Total: -21.40 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -3.93 Total: 18.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.97 -7.70 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004466101.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.074 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds