Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.50701 * 109.47012 * 239.99679 * 2 1 3 5 5 N 1.34780 * 119.99928 * 60.00451 * 4 2 1 6 6 O 1.21277 * 120.00099 * 239.99805 * 4 2 1 7 7 C 1.50696 * 109.47110 * 120.00144 * 2 1 3 8 8 O 1.21287 * 120.00290 * 121.42657 * 7 2 1 9 9 N 1.34784 * 119.99862 * 301.42129 * 7 2 1 10 10 C 1.46923 * 120.62957 * 174.70411 * 9 7 2 11 11 C 1.53193 * 108.77842 * 233.59103 * 10 9 7 12 12 C 1.53048 * 109.30821 * 305.36594 * 11 10 9 13 13 C 1.52995 * 109.45911 * 181.38220 * 12 11 10 14 14 H 1.08997 * 110.00327 * 305.16976 * 13 12 11 15 15 C 1.54333 * 109.99450 * 184.12767 * 13 12 11 16 16 C 1.55156 * 103.02324 * 218.66684 * 15 13 12 17 17 C 1.54916 * 101.58019 * 35.30749 * 16 15 13 18 18 N 1.47032 * 109.88171 * 66.26060 * 13 12 11 19 19 C 1.36931 * 125.64717 * 298.39713 * 18 13 12 20 20 H 1.08000 * 119.99754 * 138.15717 * 19 18 13 21 21 C 1.38811 * 120.00426 * 318.42799 * 19 18 13 22 22 N 1.31612 * 120.00466 * 168.97048 * 21 19 18 23 23 Si 1.86801 * 119.99719 * 348.97819 * 21 19 18 24 24 H 1.48497 * 109.47559 * 87.80019 * 23 21 19 25 25 H 1.48501 * 109.47074 * 207.80896 * 23 21 19 26 26 H 1.48500 * 109.46980 * 327.80213 * 23 21 19 27 27 C 1.53041 * 109.53735 * 61.36615 * 12 11 10 28 28 C 1.46917 * 120.62839 * 354.68452 * 9 7 2 29 29 H 1.09001 * 109.47157 * 299.85720 * 1 2 3 30 30 H 1.09003 * 109.47568 * 59.85866 * 1 2 3 31 31 H 1.09000 * 109.47233 * 179.85837 * 1 2 3 32 32 H 1.09006 * 109.47094 * 195.72499 * 3 2 1 33 33 H 1.09002 * 109.46983 * 315.71591 * 3 2 1 34 34 H 1.08994 * 109.47543 * 75.72180 * 3 2 1 35 35 H 0.97004 * 119.99763 * 359.97438 * 5 4 2 36 36 H 0.97003 * 120.00259 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.58875 * 113.79836 * 10 9 7 38 38 H 1.09003 * 109.70785 * 353.44775 * 10 9 7 39 39 H 1.08996 * 109.50179 * 185.41904 * 11 10 9 40 40 H 1.09003 * 109.49802 * 65.31178 * 11 10 9 41 41 H 1.08995 * 109.45718 * 301.35661 * 12 11 10 42 42 H 1.09001 * 110.84955 * 100.20088 * 15 13 12 43 43 H 1.08999 * 110.66208 * 337.05318 * 15 13 12 44 44 H 1.08997 * 111.00551 * 277.23451 * 16 15 13 45 45 H 1.09004 * 111.00370 * 153.37730 * 16 15 13 46 46 H 1.08994 * 110.36622 * 204.14912 * 17 16 15 47 47 H 1.09003 * 110.45789 * 81.87344 * 17 16 15 48 48 H 0.96995 * 120.00300 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.50114 * 58.58604 * 27 12 11 50 50 H 1.08999 * 109.49557 * 178.68160 * 27 12 11 51 51 H 1.08997 * 109.58880 * 246.19250 * 28 9 7 52 52 H 1.08998 * 109.59129 * 6.62386 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7295 -1.6965 -1.1191 7 6 2.0323 -0.7104 1.2304 8 8 2.7508 -1.6812 1.1194 9 7 1.6832 -0.2669 2.4544 10 6 2.0682 -1.0142 3.6593 11 6 0.8120 -1.2875 4.4925 12 6 0.0947 0.0346 4.7752 13 6 -1.1418 -0.2304 5.6363 14 1 -1.7786 -0.9733 5.1558 15 6 -1.9317 1.0793 5.8427 16 6 -2.4026 0.9748 7.3174 17 6 -1.1991 0.2572 7.9781 18 7 -0.7327 -0.7074 6.9655 19 6 -0.0296 -1.8545 7.2202 20 1 0.7649 -1.8497 7.9518 21 6 -0.3341 -3.0221 6.5341 22 7 0.4701 -4.0609 6.6133 23 14 -1.8855 -3.1190 5.4981 24 1 -1.5967 -2.6275 4.1269 25 1 -2.3491 -4.5282 5.4316 26 1 -2.9442 -2.2782 6.1124 27 6 -0.3325 0.6778 3.4539 28 6 0.9108 0.9733 2.6089 29 1 -0.3633 0.5116 0.8913 30 1 -0.3634 0.5160 -0.8887 31 1 -0.3634 -1.0276 -0.0025 32 1 3.0938 1.4552 -0.2785 33 1 1.4675 2.0302 -0.7176 34 1 1.9222 1.8695 0.9958 35 1 1.1488 0.5385 -2.5436 36 1 2.0297 -0.7075 -3.2466 37 1 2.7740 -0.4251 4.2448 38 1 2.5299 -1.9594 3.3737 39 1 1.0952 -1.7564 5.4348 40 1 0.1467 -1.9516 3.9405 41 1 0.7689 0.7073 5.3051 42 1 -2.7860 1.1277 5.1676 43 1 -1.2837 1.9449 5.7052 44 1 -3.3079 0.3730 7.3967 45 1 -2.5535 1.9638 7.7504 46 1 -1.5174 -0.2644 8.8807 47 1 -0.4107 0.9725 8.2122 48 1 0.2575 -4.8766 6.1335 49 1 -0.9870 -0.0047 2.9118 50 1 -0.8638 1.6076 3.6570 51 1 1.5221 1.7246 3.1088 52 1 0.6075 1.3396 1.6282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004466101.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = -55.510635 kcal Electronic energy + Delta-G solvation = -32474.285357 eV Core-core repulsion = 28473.946117 eV Total energy + Delta-G solvation = -4000.339240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21786 -40.53382 -39.52901 -37.77374 -36.40319 -34.82822 -34.32748 -33.65929 -32.01880 -31.38651 -29.37999 -28.43508 -26.60673 -25.96380 -24.90113 -24.12521 -22.83186 -21.60175 -21.52310 -21.14664 -20.06059 -18.69457 -18.48113 -17.88869 -17.32779 -16.97790 -16.60899 -16.44099 -16.36178 -15.79181 -15.49645 -15.37558 -15.21470 -14.96725 -14.67138 -14.64130 -14.54635 -14.15568 -13.74661 -13.56714 -13.47604 -13.38128 -13.19573 -13.14361 -12.94035 -12.79042 -12.57051 -12.32488 -12.31356 -12.10518 -11.97171 -11.93602 -11.80352 -11.64631 -11.29756 -11.10458 -11.08280 -10.85321 -10.64201 -10.43924 -10.20957 -9.58900 -8.59475 -8.19682 -5.60625 1.23989 1.31308 1.41361 1.52886 1.68474 1.87206 2.37334 2.57130 3.11025 3.25076 3.43215 3.67393 3.84763 3.87100 3.90781 3.97420 4.05361 4.13743 4.20582 4.25899 4.35871 4.43601 4.49992 4.56888 4.61022 4.62134 4.70342 4.73693 4.79051 4.83524 4.88042 4.90018 5.02335 5.03459 5.12130 5.16372 5.19245 5.21793 5.23120 5.37874 5.42875 5.43723 5.55347 5.69047 5.81079 5.90779 6.01014 6.19945 6.41438 6.51157 6.92927 7.18355 7.41522 7.57860 8.27375 8.98863 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.004045 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.655708 B = 6919.744121 C = 7685.766367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.153 4.153 4 C 0.518 3.482 5 N -0.827 5.827 6 O -0.568 6.568 7 C 0.503 3.497 8 O -0.568 6.568 9 N -0.603 5.603 10 C 0.124 3.876 11 C -0.140 4.140 12 C -0.076 4.076 13 C 0.137 3.863 14 H 0.006 0.994 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.120 3.880 18 N -0.623 5.623 19 C -0.225 4.225 20 H 0.041 0.959 21 C 0.004 3.996 22 N -0.949 5.949 23 Si 0.939 3.061 24 H -0.270 1.270 25 H -0.324 1.324 26 H -0.262 1.262 27 C -0.131 4.131 28 C 0.082 3.918 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.420 0.580 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.021 0.979 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.031 0.969 47 H 0.037 0.963 48 H 0.258 0.742 49 H 0.051 0.949 50 H 0.119 0.881 51 H 0.093 0.907 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 23.541 -16.236 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 C -0.210 4.210 4 C 0.301 3.699 5 N -0.393 5.393 6 O -0.445 6.445 7 C 0.291 3.709 8 O -0.446 6.446 9 N -0.337 5.337 10 C 0.001 3.999 11 C -0.178 4.178 12 C -0.096 4.096 13 C 0.032 3.968 14 H 0.023 0.977 15 C -0.153 4.153 16 C -0.165 4.165 17 C -0.004 4.004 18 N -0.349 5.349 19 C -0.355 4.355 20 H 0.059 0.941 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.770 3.230 24 H -0.197 1.197 25 H -0.254 1.254 26 H -0.187 1.187 27 C -0.169 4.169 28 C -0.038 4.038 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.253 0.747 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.137 0.863 51 H 0.111 0.889 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.548 22.202 -16.033 27.942 hybrid contribution -0.184 -1.856 -0.309 1.890 sum -5.732 20.346 -16.343 26.719 Atomic orbital electron populations 1.22334 0.88274 1.03240 1.07205 1.20882 1.00307 0.99117 0.89931 1.22334 1.02373 0.89314 1.06936 1.20333 0.79590 0.83716 0.86246 1.43521 1.55493 1.34087 1.06195 1.90891 1.38769 1.27828 1.86970 1.20937 0.80356 0.84212 0.85443 1.90805 1.38141 1.29206 1.86425 1.48210 1.54764 1.26135 1.04554 1.21386 0.97260 0.95730 0.85503 1.22348 0.95699 0.98816 1.00907 1.21386 0.97158 0.95101 0.95966 1.21488 0.93960 0.94769 0.86549 0.97670 1.22640 0.99757 0.96099 0.96766 1.22725 0.96616 1.00964 0.96145 1.21912 0.94772 0.91554 0.92207 1.44826 1.65048 1.23120 1.01939 1.18132 1.10017 0.85519 1.21825 0.94110 1.25873 0.98701 0.94555 1.00134 1.69878 1.38718 1.04691 1.46054 0.86131 0.82955 0.73999 0.79871 1.19702 1.25436 1.18726 1.22138 0.97555 1.02453 0.94791 1.22787 0.92581 0.84846 1.03590 0.87933 0.86023 0.94395 0.92605 0.85663 0.88374 0.74743 0.75963 0.91006 0.93842 0.88905 0.96039 0.90976 0.89524 0.88207 0.92863 0.87908 0.95087 0.94546 0.93248 0.92986 0.86313 0.88866 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.99 71.98 0.58 -1.69 16 2 C -0.10 -2.05 0.59 -53.68 -0.03 -2.08 16 3 C -0.15 -1.69 7.89 71.98 0.57 -1.12 16 4 C 0.52 13.42 6.68 87.66 0.59 14.01 16 5 N -0.83 -10.30 8.67 -173.53 -1.50 -11.80 16 6 O -0.57 -23.25 15.02 20.42 0.31 -22.95 16 7 C 0.50 17.60 6.48 87.65 0.57 18.16 16 8 O -0.57 -27.58 13.62 20.39 0.28 -27.30 16 9 N -0.60 -18.94 2.97 -818.90 -2.43 -21.37 16 10 C 0.12 4.99 6.41 86.36 0.55 5.55 16 11 C -0.14 -6.14 3.84 30.68 0.12 -6.03 16 12 C -0.08 -2.55 1.78 -10.77 -0.02 -2.57 16 13 C 0.14 5.08 1.98 45.34 0.09 5.17 16 14 H 0.01 0.25 3.49 -2.39 -0.01 0.24 16 15 C -0.12 -2.87 5.32 31.79 0.17 -2.71 16 16 C -0.13 -3.38 7.09 31.99 0.23 -3.15 16 17 C 0.12 4.34 7.23 86.86 0.63 4.97 16 18 N -0.62 -27.98 2.61 -668.23 -1.75 -29.72 16 19 C -0.23 -12.54 8.36 84.03 0.70 -11.84 16 20 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 21 C 0.00 0.26 3.61 84.86 0.31 0.56 16 22 N -0.95 -60.29 13.97 21.65 0.30 -59.99 16 23 Si 0.94 48.39 23.11 68.60 1.59 49.98 16 24 H -0.27 -13.46 5.68 99.48 0.56 -12.89 16 25 H -0.32 -17.50 7.11 99.48 0.71 -16.79 16 26 H -0.26 -12.81 7.02 99.48 0.70 -12.11 16 27 C -0.13 -2.92 4.76 30.68 0.15 -2.77 16 28 C 0.08 1.56 3.95 86.37 0.34 1.90 16 29 H 0.10 1.26 4.12 -2.39 -0.01 1.25 16 30 H 0.12 0.57 7.57 -2.39 -0.02 0.55 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.80 8.04 -2.38 -0.02 0.78 16 33 H 0.12 0.14 7.97 -2.39 -0.02 0.12 16 34 H 0.10 0.92 4.79 -2.39 -0.01 0.91 16 35 H 0.42 1.28 8.07 -92.70 -0.75 0.53 16 36 H 0.41 4.61 8.93 -92.71 -0.83 3.78 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.04 2.08 7.05 -2.39 -0.02 2.07 16 39 H 0.09 4.97 4.31 -2.39 -0.01 4.96 16 40 H 0.02 1.05 5.60 -2.39 -0.01 1.03 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.10 1.91 7.31 -2.39 -0.02 1.89 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 49 H 0.05 1.31 7.67 -2.39 -0.02 1.29 16 50 H 0.12 1.65 6.74 -2.39 -0.02 1.63 16 51 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 52 H 0.14 1.54 2.73 -2.39 -0.01 1.53 16 Total: -1.00 -94.93 367.75 1.56 -93.37 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.76 Total: 13.41 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.53 Total: 16.36 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -5.38 Total: -122.87 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: 0.58 Total: -50.25 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.59 Total: 49.98 kcal Total: -94.93 1.56 -93.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004466101.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.857 kcal (2) G-P(sol) polarization free energy of solvation -94.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds