Wall clock time and date at job start Tue Mar 31 2020 20:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 H 1.08996 * 109.30163 * 304.99522 * 3 2 1 5 5 C 1.52919 * 109.29809 * 185.41560 * 3 2 1 6 6 C 1.53350 * 108.67554 * 188.93512 * 5 3 2 7 7 H 1.08996 * 109.67377 * 187.26336 * 6 5 3 8 8 C 1.50698 * 109.67205 * 307.76359 * 6 5 3 9 9 O 1.21280 * 120.00172 * 97.19197 * 8 6 5 10 10 N 1.34777 * 119.99935 * 277.18774 * 8 6 5 11 11 C 1.46502 * 120.00064 * 4.94141 * 10 8 6 12 12 C 1.46501 * 119.99916 * 184.93469 * 10 8 6 13 13 C 1.53038 * 109.46223 * 240.07061 * 12 10 8 14 14 C 1.53190 * 109.31300 * 178.61637 * 13 12 10 15 15 N 1.46931 * 108.77747 * 54.63261 * 14 13 12 16 16 C 1.36931 * 120.62695 * 126.36898 * 15 14 13 17 17 H 1.08003 * 119.99613 * 209.30892 * 16 15 14 18 18 C 1.38811 * 120.00461 * 29.30937 * 16 15 14 19 19 N 1.31626 * 119.99814 * 13.47225 * 18 16 15 20 20 Si 1.86803 * 120.00261 * 193.47246 * 18 16 15 21 21 H 1.48491 * 109.47175 * 90.00076 * 20 18 16 22 22 H 1.48501 * 109.46725 * 210.00253 * 20 18 16 23 23 H 1.48499 * 109.47087 * 329.99694 * 20 18 16 24 24 C 1.46921 * 118.73795 * 306.39462 * 15 14 13 25 25 C 1.53042 * 109.45826 * 120.00275 * 12 10 8 26 26 C 1.53067 * 108.42079 * 67.53440 * 6 5 3 27 27 C 1.50179 * 109.89226 * 311.09425 * 26 6 5 28 28 O 1.21278 * 118.24766 * 197.60629 * 27 26 6 29 29 N 1.33097 * 123.42244 * 17.77811 * 27 26 6 30 30 H 1.09004 * 109.46993 * 59.99748 * 1 2 3 31 31 H 1.08998 * 109.46722 * 300.00290 * 1 2 3 32 32 H 1.08992 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46724 * 120.00174 * 2 1 3 34 34 H 1.09004 * 109.46984 * 240.00097 * 2 1 3 35 35 H 1.09000 * 109.60762 * 308.69620 * 5 3 2 36 36 H 1.09002 * 109.60662 * 69.01682 * 5 3 2 37 37 H 1.08996 * 109.47000 * 84.72024 * 11 10 8 38 38 H 1.08996 * 109.46872 * 204.71777 * 11 10 8 39 39 H 1.08999 * 109.46898 * 324.71747 * 11 10 8 40 40 H 1.09007 * 109.46040 * 0.03333 * 12 10 8 41 41 H 1.09001 * 109.49770 * 298.56623 * 13 12 10 42 42 H 1.09006 * 109.49737 * 58.66559 * 13 12 10 43 43 H 1.09001 * 109.58842 * 294.84890 * 14 13 12 44 44 H 1.09001 * 109.58840 * 174.42171 * 14 13 12 45 45 H 0.96997 * 119.99827 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.59044 * 293.81964 * 24 15 14 47 47 H 1.09007 * 109.70229 * 173.46127 * 24 15 14 48 48 H 1.09009 * 109.49964 * 301.34119 * 25 12 10 49 49 H 1.08996 * 109.49559 * 61.40208 * 25 12 10 50 50 H 1.08994 * 109.40791 * 71.22760 * 26 6 5 51 51 H 1.09001 * 109.39862 * 191.06206 * 26 6 5 52 52 H 0.96999 * 117.74458 * 177.60689 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6039 1.9788 -0.8427 5 6 3.5632 1.4400 -0.1362 6 6 4.0787 2.8665 0.0894 7 1 5.1454 2.9101 -0.1299 8 6 3.3365 3.8221 -0.8088 9 8 2.3910 4.4483 -0.3788 10 7 3.7234 3.9810 -2.0900 11 6 4.7948 3.1472 -2.6405 12 6 3.0724 4.9875 -2.9323 13 6 2.4239 4.3020 -4.1372 14 6 1.7150 5.3530 -4.9971 15 7 2.6785 6.4053 -5.3479 16 6 2.8774 6.7615 -6.6550 17 1 3.8381 7.1406 -6.9712 18 6 1.8445 6.6354 -7.5737 19 7 0.6131 6.4318 -7.1557 20 14 2.2020 6.7546 -9.4034 21 1 2.5088 5.4033 -9.9368 22 1 1.0148 7.3060 -10.1047 23 1 3.3664 7.6497 -9.6229 24 6 3.4249 7.0677 -4.2696 25 6 4.1147 5.9975 -3.4178 26 6 3.8379 3.2418 1.5537 27 6 2.4223 2.9195 1.9377 28 8 1.9661 3.4370 2.9352 29 7 1.6440 2.0935 1.2425 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.9960 0.7725 0.6090 36 1 3.8405 1.1020 -1.1347 37 1 4.3774 2.2024 -2.9886 38 1 5.2662 3.6657 -3.4753 39 1 5.5379 2.9531 -1.8670 40 1 2.3071 5.5052 -2.3539 41 1 3.1920 3.8050 -4.7298 42 1 1.6984 3.5662 -3.7902 43 1 0.8880 5.7874 -4.4354 44 1 1.3365 4.8863 -5.9065 45 1 -0.1086 6.3434 -7.7976 46 1 2.7374 7.6419 -3.6485 47 1 4.1745 7.7338 -4.6969 48 1 4.5927 6.4685 -2.5588 49 1 4.8671 5.4843 -4.0167 50 1 4.5223 2.6796 2.1889 51 1 4.0138 4.3092 1.6875 52 1 0.7539 1.9164 1.5848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005756091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:31 Heat of formation + Delta-G solvation = -58.494258 kcal Electronic energy + Delta-G solvation = -31512.456488 eV Core-core repulsion = 27511.987868 eV Total energy + Delta-G solvation = -4000.468619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24926 -39.41514 -37.57801 -36.95325 -35.17302 -34.15722 -32.50845 -32.08980 -30.25101 -29.63924 -29.29321 -26.95508 -26.00639 -24.80962 -23.51512 -22.21375 -22.07019 -21.72329 -20.33045 -18.96749 -18.48744 -17.39918 -16.96557 -16.79295 -16.39242 -15.79329 -15.74536 -15.10616 -14.85496 -14.49404 -14.10531 -13.98977 -13.89253 -13.75018 -13.66202 -13.54774 -13.08410 -12.94355 -12.85751 -12.57269 -12.47861 -12.20394 -12.11216 -12.08408 -11.67810 -11.51673 -11.48345 -11.25792 -11.10919 -11.08798 -10.83219 -10.78360 -10.39536 -10.22833 -10.10462 -9.82626 -9.77665 -9.68846 -9.45533 -9.11109 -8.57365 -8.34673 -6.69812 -5.81287 -3.27193 2.61855 2.72883 3.03809 3.24542 3.34812 3.41563 3.43057 4.13581 4.20627 4.25820 4.45900 4.48243 4.59221 4.77389 4.83173 4.91663 5.06089 5.14773 5.21348 5.25007 5.31692 5.34485 5.37573 5.38993 5.43376 5.49575 5.56979 5.58812 5.62271 5.64865 5.70638 5.81104 5.83633 5.94509 6.03866 6.20768 6.28719 6.45092 6.54370 6.58072 6.73629 6.74126 6.86446 6.92918 7.32516 7.33934 7.50282 7.65383 7.75818 8.23579 8.25430 8.42929 9.18414 9.80552 10.37863 11.26979 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002925 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.630403 B = 9570.373369 C =10140.732048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.137 3.863 4 H 0.078 0.922 5 C -0.120 4.120 6 C -0.116 4.116 7 H 0.107 0.893 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.605 5.605 11 C 0.074 3.926 12 C 0.145 3.855 13 C -0.143 4.143 14 C 0.173 3.827 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C -0.138 4.138 26 C -0.117 4.117 27 C 0.538 3.462 28 O -0.564 6.564 29 N -0.707 5.707 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.092 0.908 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 -15.596 13.430 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.096 0.904 5 C -0.158 4.158 6 C -0.138 4.138 7 H 0.125 0.875 8 C 0.297 3.703 9 O -0.407 6.407 10 N -0.338 5.338 11 C -0.069 4.069 12 C 0.043 3.957 13 C -0.183 4.183 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.020 3.980 25 C -0.178 4.178 26 C -0.157 4.157 27 C 0.326 3.674 28 O -0.444 6.444 29 N -0.359 5.359 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.123 0.877 51 H 0.123 0.877 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.176 -14.929 13.953 22.009 hybrid contribution -0.099 -0.105 -1.092 1.101 sum 8.078 -15.034 12.862 21.370 Atomic orbital electron populations 1.21805 0.95220 1.02134 1.02306 1.21904 0.96839 0.95260 1.03117 1.21016 0.94818 0.93512 0.87461 0.90435 1.21904 0.94724 0.94955 1.04258 1.21541 1.01952 0.95382 0.94898 0.87477 1.20397 0.84453 0.83054 0.82375 1.90756 1.27865 1.47786 1.74273 1.48147 1.37065 1.37572 1.10981 1.21813 0.90043 0.95104 0.99949 1.21207 0.95153 0.88122 0.91220 1.22539 0.99806 0.99790 0.96158 1.20784 0.89737 0.87240 0.97532 1.44068 1.46560 1.39038 1.01838 1.19192 0.95236 1.39780 0.84092 0.91671 1.25114 0.94809 1.01046 0.98583 1.69998 0.98566 1.53322 1.32921 0.86259 0.77235 0.77770 0.85296 1.21456 1.21706 1.20429 1.20861 0.94533 0.92463 0.90103 1.22378 0.98132 0.98092 0.99195 1.21504 0.94460 1.04949 0.94819 1.19691 0.88152 0.77232 0.82369 1.90735 1.74541 1.51471 1.27633 1.45382 1.18298 1.47193 1.25028 0.92048 0.92725 0.92173 0.91181 0.90266 0.89615 0.89090 0.92636 0.90231 0.91620 0.88787 0.92512 0.93275 0.96260 0.88955 0.93560 0.96254 0.92470 0.93012 0.92071 0.87741 0.87746 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.76 37.16 0.36 -0.77 16 2 C -0.13 -0.88 5.58 -26.73 -0.15 -1.03 16 3 C 0.14 1.23 2.40 -68.38 -0.16 1.07 16 4 H 0.08 0.90 7.29 -51.93 -0.38 0.52 16 5 C -0.12 -0.83 4.83 -26.59 -0.13 -0.96 16 6 C -0.12 -1.03 2.32 -91.56 -0.21 -1.24 16 7 H 0.11 0.67 6.38 -51.93 -0.33 0.33 16 8 C 0.51 6.83 5.43 -10.99 -0.06 6.77 16 9 O -0.53 -9.50 14.05 5.56 0.08 -9.42 16 10 N -0.61 -7.91 2.76 -173.89 -0.48 -8.39 16 11 C 0.07 0.68 8.68 59.85 0.52 1.20 16 12 C 0.14 2.44 2.47 -67.89 -0.17 2.27 16 13 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16 14 C 0.17 4.07 5.28 -3.71 -0.02 4.05 16 15 N -0.59 -14.50 2.99 -172.32 -0.52 -15.02 16 16 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 17 H 0.07 1.71 7.87 -52.48 -0.41 1.30 16 18 C 0.00 0.08 5.00 -17.43 -0.09 0.00 16 19 N -0.90 -25.89 11.06 55.49 0.61 -25.28 16 20 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 25 C -0.14 -2.31 5.32 -26.61 -0.14 -2.46 16 26 C -0.12 -1.21 5.20 -28.10 -0.15 -1.36 16 27 C 0.54 7.39 6.39 -11.98 -0.08 7.31 16 28 O -0.56 -10.15 17.78 5.56 0.10 -10.05 16 29 N -0.71 -8.03 4.93 -54.92 -0.27 -8.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.40 6.65 -51.93 -0.35 0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 36 H 0.09 0.50 7.05 -51.93 -0.37 0.13 16 37 H 0.06 0.45 7.64 -51.93 -0.40 0.05 16 38 H 0.08 0.80 6.46 -51.93 -0.34 0.46 16 39 H 0.07 0.41 6.08 -51.93 -0.32 0.10 16 40 H 0.09 1.87 6.91 -51.92 -0.36 1.51 16 41 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 2.42 6.03 -51.93 -0.31 2.10 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.15 7.94 -51.92 -0.41 0.73 16 48 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 49 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 50 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 52 H 0.40 4.41 7.00 -40.82 -0.29 4.13 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -34.35 390.11 -9.19 -43.54 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.78 Total: 2.61 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.78 Total: 8.19 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.65 Total: -56.99 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.18 Total: -19.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.35 -9.19 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005756091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.952 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds