Wall clock time and date at job start Tue Mar 31 2020 20:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 H 1.08996 * 109.30163 * 304.99522 * 3 2 1 5 5 C 1.52919 * 109.29809 * 185.41560 * 3 2 1 6 6 C 1.53350 * 108.67554 * 188.93512 * 5 3 2 7 7 H 1.08996 * 109.67377 * 187.26336 * 6 5 3 8 8 C 1.50698 * 109.67205 * 307.76359 * 6 5 3 9 9 O 1.21280 * 120.00172 * 97.19197 * 8 6 5 10 10 N 1.34777 * 119.99935 * 277.18774 * 8 6 5 11 11 C 1.46502 * 120.00064 * 4.94141 * 10 8 6 12 12 C 1.46501 * 119.99916 * 184.93469 * 10 8 6 13 13 C 1.53038 * 109.46223 * 240.07061 * 12 10 8 14 14 C 1.53190 * 109.31300 * 178.61637 * 13 12 10 15 15 N 1.46931 * 108.77747 * 54.63261 * 14 13 12 16 16 C 1.36931 * 120.62695 * 126.36898 * 15 14 13 17 17 H 1.08003 * 119.99613 * 209.30892 * 16 15 14 18 18 C 1.38811 * 120.00461 * 29.30937 * 16 15 14 19 19 N 1.31626 * 119.99814 * 13.47225 * 18 16 15 20 20 Si 1.86803 * 120.00261 * 193.47246 * 18 16 15 21 21 H 1.48491 * 109.47175 * 90.00076 * 20 18 16 22 22 H 1.48501 * 109.46725 * 210.00253 * 20 18 16 23 23 H 1.48499 * 109.47087 * 329.99694 * 20 18 16 24 24 C 1.46921 * 118.73795 * 306.39462 * 15 14 13 25 25 C 1.53042 * 109.45826 * 120.00275 * 12 10 8 26 26 C 1.53067 * 108.42079 * 67.53440 * 6 5 3 27 27 C 1.50179 * 109.89226 * 311.09425 * 26 6 5 28 28 O 1.21278 * 118.24766 * 197.60629 * 27 26 6 29 29 N 1.33097 * 123.42244 * 17.77811 * 27 26 6 30 30 H 1.09004 * 109.46993 * 59.99748 * 1 2 3 31 31 H 1.08998 * 109.46722 * 300.00290 * 1 2 3 32 32 H 1.08992 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46724 * 120.00174 * 2 1 3 34 34 H 1.09004 * 109.46984 * 240.00097 * 2 1 3 35 35 H 1.09000 * 109.60762 * 308.69620 * 5 3 2 36 36 H 1.09002 * 109.60662 * 69.01682 * 5 3 2 37 37 H 1.08996 * 109.47000 * 84.72024 * 11 10 8 38 38 H 1.08996 * 109.46872 * 204.71777 * 11 10 8 39 39 H 1.08999 * 109.46898 * 324.71747 * 11 10 8 40 40 H 1.09007 * 109.46040 * 0.03333 * 12 10 8 41 41 H 1.09001 * 109.49770 * 298.56623 * 13 12 10 42 42 H 1.09006 * 109.49737 * 58.66559 * 13 12 10 43 43 H 1.09001 * 109.58842 * 294.84890 * 14 13 12 44 44 H 1.09001 * 109.58840 * 174.42171 * 14 13 12 45 45 H 0.96997 * 119.99827 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.59044 * 293.81964 * 24 15 14 47 47 H 1.09007 * 109.70229 * 173.46127 * 24 15 14 48 48 H 1.09009 * 109.49964 * 301.34119 * 25 12 10 49 49 H 1.08996 * 109.49559 * 61.40208 * 25 12 10 50 50 H 1.08994 * 109.40791 * 71.22760 * 26 6 5 51 51 H 1.09001 * 109.39862 * 191.06206 * 26 6 5 52 52 H 0.96999 * 117.74458 * 177.60689 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6039 1.9788 -0.8427 5 6 3.5632 1.4400 -0.1362 6 6 4.0787 2.8665 0.0894 7 1 5.1454 2.9101 -0.1299 8 6 3.3365 3.8221 -0.8088 9 8 2.3910 4.4483 -0.3788 10 7 3.7234 3.9810 -2.0900 11 6 4.7948 3.1472 -2.6405 12 6 3.0724 4.9875 -2.9323 13 6 2.4239 4.3020 -4.1372 14 6 1.7150 5.3530 -4.9971 15 7 2.6785 6.4053 -5.3479 16 6 2.8774 6.7615 -6.6550 17 1 3.8381 7.1406 -6.9712 18 6 1.8445 6.6354 -7.5737 19 7 0.6131 6.4318 -7.1557 20 14 2.2020 6.7546 -9.4034 21 1 2.5088 5.4033 -9.9368 22 1 1.0148 7.3060 -10.1047 23 1 3.3664 7.6497 -9.6229 24 6 3.4249 7.0677 -4.2696 25 6 4.1147 5.9975 -3.4178 26 6 3.8379 3.2418 1.5537 27 6 2.4223 2.9195 1.9377 28 8 1.9661 3.4370 2.9352 29 7 1.6440 2.0935 1.2425 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.9960 0.7725 0.6090 36 1 3.8405 1.1020 -1.1347 37 1 4.3774 2.2024 -2.9886 38 1 5.2662 3.6657 -3.4753 39 1 5.5379 2.9531 -1.8670 40 1 2.3071 5.5052 -2.3539 41 1 3.1920 3.8050 -4.7298 42 1 1.6984 3.5662 -3.7902 43 1 0.8880 5.7874 -4.4354 44 1 1.3365 4.8863 -5.9065 45 1 -0.1086 6.3434 -7.7976 46 1 2.7374 7.6419 -3.6485 47 1 4.1745 7.7338 -4.6969 48 1 4.5927 6.4685 -2.5588 49 1 4.8671 5.4843 -4.0167 50 1 4.5223 2.6796 2.1889 51 1 4.0138 4.3092 1.6875 52 1 0.7539 1.9164 1.5848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005756091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:30 Heat of formation + Delta-G solvation = -82.375474 kcal Electronic energy + Delta-G solvation = -31513.492055 eV Core-core repulsion = 27511.987868 eV Total energy + Delta-G solvation = -4001.504187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17093 -40.55334 -39.02475 -37.91622 -36.55024 -35.03210 -34.10776 -33.00868 -31.90031 -31.34076 -30.00338 -27.88167 -27.31477 -26.08269 -24.49859 -23.87300 -23.35739 -22.52756 -21.44903 -20.47213 -19.41948 -18.72580 -18.27532 -17.89994 -17.33193 -17.01478 -16.74030 -16.56005 -16.11103 -15.60158 -15.37965 -15.34623 -14.93874 -14.73388 -14.71437 -14.67410 -14.40541 -14.14269 -14.03272 -13.77045 -13.60182 -13.20684 -13.03033 -12.93824 -12.87203 -12.85095 -12.62141 -12.52226 -12.35784 -12.16111 -12.05122 -11.95958 -11.89612 -11.86550 -11.74052 -11.47367 -11.32993 -10.81127 -10.59155 -10.57805 -10.05013 -9.52774 -8.70974 -7.87594 -5.37426 1.48662 1.48859 1.58587 1.63278 1.72636 2.01752 2.40119 2.50954 3.28702 3.39853 3.53905 3.58290 3.64031 3.76141 3.79746 3.97270 4.07258 4.17714 4.20837 4.28652 4.32895 4.44554 4.46389 4.51798 4.60391 4.64459 4.69350 4.74513 4.76049 4.81843 4.84416 4.87537 4.90889 5.02775 5.05103 5.05162 5.09958 5.14115 5.14769 5.23819 5.29245 5.37367 5.46276 5.62987 5.63871 5.69859 5.82479 6.38424 6.43790 6.51683 7.13141 7.23592 7.26126 7.82309 8.35888 9.18973 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002925 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.630403 B = 9570.373369 C =10140.732048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C 0.131 3.869 4 H 0.046 0.954 5 C -0.116 4.116 6 C -0.103 4.103 7 H 0.152 0.848 8 C 0.504 3.496 9 O -0.587 6.587 10 N -0.602 5.602 11 C 0.063 3.937 12 C 0.155 3.845 13 C -0.122 4.122 14 C 0.181 3.819 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.072 0.928 18 C -0.052 4.052 19 N -0.940 5.940 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.267 1.267 24 C 0.142 3.858 25 C -0.120 4.120 26 C -0.115 4.115 27 C 0.525 3.475 28 O -0.623 6.623 29 N -0.703 5.703 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.053 0.947 43 H -0.019 1.019 44 H 0.062 0.938 45 H 0.249 0.751 46 H 0.000 1.000 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.145 0.855 51 H 0.085 0.915 52 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -18.494 13.257 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.064 0.936 5 C -0.153 4.153 6 C -0.124 4.124 7 H 0.170 0.830 8 C 0.293 3.707 9 O -0.467 6.467 10 N -0.333 5.333 11 C -0.078 4.078 12 C 0.051 3.949 13 C -0.162 4.162 14 C 0.055 3.945 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.090 0.910 18 C -0.247 4.247 19 N -0.586 5.586 20 Si 0.800 3.200 21 H -0.207 1.207 22 H -0.226 1.226 23 H -0.191 1.191 24 C 0.016 3.984 25 C -0.160 4.160 26 C -0.155 4.155 27 C 0.315 3.685 28 O -0.507 6.507 29 N -0.352 5.352 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.072 0.928 43 H -0.001 1.001 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.163 0.837 51 H 0.103 0.897 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.294 -17.875 13.755 25.687 hybrid contribution -1.449 0.851 -1.021 1.966 sum 10.845 -17.024 12.734 23.866 Atomic orbital electron populations 1.21837 0.96357 1.02587 1.01084 1.21869 0.95824 0.93698 1.04756 1.21213 0.97005 0.94179 0.84987 0.93634 1.22045 0.92359 0.93968 1.06975 1.21608 1.03622 0.94943 0.92207 0.83015 1.21317 0.83864 0.82939 0.82532 1.90750 1.30547 1.50158 1.75272 1.48073 1.37598 1.37036 1.10606 1.22196 0.89566 0.94857 1.01168 1.20703 0.94654 0.89013 0.90489 1.22226 0.99799 0.98093 0.96094 1.20528 0.89419 0.88127 0.96474 1.44320 1.46826 1.39817 1.02210 1.19574 0.95418 1.38956 0.85224 0.90991 1.25920 0.94559 1.01373 1.02847 1.70188 0.99463 1.54966 1.33999 0.85195 0.76883 0.77970 0.79956 1.20744 1.22588 1.19129 1.21007 0.94123 0.93760 0.89527 1.22150 0.97774 0.96846 0.99198 1.21567 0.92705 1.04470 0.96736 1.20453 0.89751 0.76634 0.81702 1.90698 1.76009 1.53683 1.30273 1.45523 1.17917 1.46458 1.25339 0.93670 0.93656 0.90833 0.89711 0.88196 0.86272 0.86444 0.90779 0.90729 0.87487 0.92737 0.90996 0.92834 1.00071 0.92007 0.94156 0.98196 0.91806 0.91140 0.90289 0.83714 0.89666 0.77328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.76 71.98 0.70 -1.51 16 2 C -0.12 -1.29 5.58 30.60 0.17 -1.12 16 3 C 0.13 2.08 2.40 45.10 0.11 2.19 16 4 H 0.05 1.04 7.29 -2.39 -0.02 1.02 16 5 C -0.12 -1.00 4.83 30.68 0.15 -0.85 16 6 C -0.10 -1.38 2.32 -11.40 -0.03 -1.41 16 7 H 0.15 0.78 6.38 -2.39 -0.02 0.76 16 8 C 0.50 12.57 5.43 87.66 0.48 13.05 16 9 O -0.59 -21.60 14.05 -3.03 -0.04 -21.65 16 10 N -0.60 -14.17 2.76 -822.44 -2.27 -16.44 16 11 C 0.06 0.83 8.68 127.77 1.11 1.94 16 12 C 0.16 5.18 2.47 45.02 0.11 5.29 16 13 C -0.12 -4.48 5.34 30.67 0.16 -4.32 16 14 C 0.18 8.89 5.28 86.36 0.46 9.34 16 15 N -0.61 -30.46 2.99 -699.10 -2.09 -32.56 16 16 C -0.26 -14.14 9.59 84.03 0.81 -13.33 16 17 H 0.07 3.72 7.87 -2.91 -0.02 3.70 16 18 C -0.05 -2.87 5.00 84.86 0.42 -2.45 16 19 N -0.94 -56.00 11.06 21.65 0.24 -55.76 16 20 Si 0.97 44.07 29.58 68.60 2.03 46.10 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C 0.14 5.93 6.51 86.36 0.56 6.49 16 25 C -0.12 -3.85 5.32 30.67 0.16 -3.69 16 26 C -0.11 -2.10 5.20 29.71 0.15 -1.94 16 27 C 0.53 14.34 6.39 87.75 0.56 14.90 16 28 O -0.62 -23.34 17.78 -3.02 -0.05 -23.39 16 29 N -0.70 -15.81 4.93 -447.00 -2.20 -18.02 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.69 6.65 -2.39 -0.02 0.67 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.39 8.11 -2.39 -0.02 0.37 16 36 H 0.12 0.49 7.05 -2.39 -0.02 0.48 16 37 H 0.07 0.76 7.64 -2.39 -0.02 0.74 16 38 H 0.07 1.12 6.46 -2.39 -0.02 1.11 16 39 H 0.11 0.56 6.08 -2.39 -0.01 0.55 16 40 H 0.05 2.28 6.91 -2.38 -0.02 2.26 16 41 H 0.07 2.44 7.72 -2.39 -0.02 2.42 16 42 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.06 3.40 6.03 -2.39 -0.01 3.38 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.06 2.54 7.94 -2.38 -0.02 2.52 16 48 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 49 H 0.08 2.30 6.72 -2.39 -0.02 2.29 16 50 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 52 H 0.39 9.13 7.00 -92.71 -0.65 8.48 16 Total: -1.00 -83.22 390.11 1.96 -81.26 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.27 Total: 17.87 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.09 Total: 22.58 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -6.33 Total: -122.77 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.10 Total: -45.04 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -83.22 1.96 -81.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005756091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.120 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds