Wall clock time and date at job start Tue Mar 31 2020 20:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08994 * 109.12799 * 55.51355 * 3 2 1 5 5 C 1.52919 * 109.30225 * 174.99830 * 3 2 1 6 6 C 1.53345 * 108.67528 * 171.06328 * 5 3 2 7 7 H 1.09004 * 109.67357 * 52.20358 * 6 5 3 8 8 C 1.50695 * 109.67427 * 172.73652 * 6 5 3 9 9 O 1.21289 * 120.00010 * 4.55300 * 8 6 5 10 10 N 1.34779 * 120.00266 * 184.55349 * 8 6 5 11 11 C 1.46493 * 120.00126 * 183.78037 * 10 8 6 12 12 C 1.46499 * 119.99736 * 3.78241 * 10 8 6 13 13 C 1.53037 * 109.46225 * 233.55963 * 12 10 8 14 14 C 1.53193 * 109.31310 * 178.60081 * 13 12 10 15 15 N 1.46919 * 108.76402 * 54.65556 * 14 13 12 16 16 C 1.36943 * 120.62999 * 126.40757 * 15 14 13 17 17 H 1.07998 * 120.00075 * 328.36692 * 16 15 14 18 18 C 1.38817 * 120.00163 * 148.37218 * 16 15 14 19 19 N 1.31616 * 119.99886 * 343.57449 * 18 16 15 20 20 Si 1.86796 * 119.99886 * 163.57264 * 18 16 15 21 21 H 1.48500 * 109.46978 * 60.00330 * 20 18 16 22 22 H 1.48504 * 109.47028 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47591 * 299.99831 * 20 18 16 24 24 C 1.46928 * 118.74093 * 306.38093 * 15 14 13 25 25 C 1.53043 * 109.46169 * 113.50321 * 12 10 8 26 26 C 1.53067 * 108.42708 * 292.47076 * 6 5 3 27 27 C 1.50185 * 109.82045 * 48.94099 * 26 6 5 28 28 O 1.21287 * 118.24388 * 162.37450 * 27 26 6 29 29 N 1.33230 * 123.59693 * 342.28153 * 27 26 6 30 30 H 1.08997 * 109.46988 * 300.00139 * 1 2 3 31 31 H 1.09006 * 109.46823 * 60.00169 * 1 2 3 32 32 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47124 * 239.99740 * 2 1 3 34 34 H 1.08997 * 109.47292 * 120.00146 * 2 1 3 35 35 H 1.09004 * 109.60235 * 51.30928 * 5 3 2 36 36 H 1.08998 * 109.73916 * 290.90110 * 5 3 2 37 37 H 1.08994 * 109.47257 * 93.56360 * 11 10 8 38 38 H 1.09004 * 109.46866 * 213.56497 * 11 10 8 39 39 H 1.08995 * 109.47270 * 333.56153 * 11 10 8 40 40 H 1.08998 * 109.45868 * 353.53209 * 12 10 8 41 41 H 1.09001 * 109.49370 * 298.56690 * 13 12 10 42 42 H 1.08997 * 109.50041 * 58.65883 * 13 12 10 43 43 H 1.08997 * 109.59613 * 294.86071 * 14 13 12 44 44 H 1.09002 * 109.69990 * 174.50159 * 14 13 12 45 45 H 0.96995 * 120.00486 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.58464 * 293.82475 * 24 15 14 47 47 H 1.09005 * 109.70178 * 173.47033 * 24 15 14 48 48 H 1.09005 * 109.49621 * 301.33525 * 25 12 10 49 49 H 1.08997 * 109.49640 * 61.43042 * 25 12 10 50 50 H 1.09002 * 109.40218 * 169.02631 * 26 6 5 51 51 H 1.08998 * 109.39864 * 288.85826 * 26 6 5 52 52 H 0.96998 * 117.98077 * 182.30355 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6094 1.9736 0.8488 5 6 3.5640 1.4398 0.1258 6 6 4.0779 2.8668 -0.0999 7 1 3.5450 3.5566 0.5546 8 6 5.5548 2.9266 0.1934 9 8 6.1600 1.9121 0.4685 10 7 6.2033 4.1073 0.1502 11 6 7.6532 4.1546 0.3536 12 6 5.4580 5.3435 -0.1003 13 6 6.0909 6.0911 -1.2761 14 6 5.2883 7.3653 -1.5573 15 7 5.2009 8.1517 -0.3194 16 6 5.5869 9.4654 -0.2986 17 1 6.3832 9.8045 -0.9444 18 6 4.9546 10.3612 0.5527 19 7 3.7962 10.0491 1.0939 20 14 5.7479 12.0097 0.9302 21 1 5.9227 12.7751 -0.3303 22 1 4.8782 12.7767 1.8578 23 1 7.0730 11.7882 1.5626 24 6 4.6908 7.5020 0.8957 25 6 5.4999 6.2262 1.1493 26 6 3.8271 3.2458 -1.5616 27 6 2.4082 2.9246 -1.9347 28 8 1.9440 3.4446 -2.9272 29 7 1.6313 2.0979 -1.2361 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9917 0.7742 -0.6240 36 1 3.8506 1.1011 1.1214 37 1 8.1572 4.1130 -0.6120 38 1 7.9187 5.0813 0.8624 39 1 7.9627 3.3047 0.9618 40 1 4.4225 5.1012 -0.3391 41 1 7.1188 6.3557 -1.0280 42 1 6.0821 5.4533 -2.1599 43 1 4.2860 7.0994 -1.8930 44 1 5.7882 7.9518 -2.3282 45 1 3.3542 10.6751 1.6885 46 1 3.6398 7.2473 0.7601 47 1 4.7967 8.1768 1.7453 48 1 5.0703 5.6844 1.9920 49 1 6.5334 6.4894 1.3743 50 1 4.0036 4.3133 -1.6943 51 1 4.5062 2.6840 -2.2029 52 1 0.7378 1.9221 -1.5700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005756093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:33 Heat of formation + Delta-G solvation = -80.021518 kcal Electronic energy + Delta-G solvation = -31453.620288 eV Core-core repulsion = 27452.218176 eV Total energy + Delta-G solvation = -4001.402111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.11026 -40.74351 -39.19366 -38.06505 -36.55153 -35.01492 -34.06765 -33.04479 -31.83084 -31.27742 -30.12993 -28.57301 -27.03028 -26.04234 -24.16093 -23.84533 -23.61507 -22.61653 -20.96308 -20.39750 -19.88070 -18.77507 -18.40096 -18.15790 -17.37928 -17.03763 -16.76348 -16.34727 -16.16629 -15.62919 -15.44481 -15.34589 -15.11444 -14.98581 -14.72193 -14.71899 -14.35396 -14.21431 -14.11092 -13.78769 -13.66834 -13.21024 -13.06936 -12.99291 -12.93665 -12.58057 -12.47542 -12.39043 -12.32543 -12.13923 -12.05879 -11.95169 -11.85275 -11.82954 -11.75144 -11.50269 -11.42989 -11.21786 -10.59168 -10.54079 -10.11345 -9.62522 -8.63635 -7.87545 -5.35256 1.47861 1.48642 1.49844 1.56316 1.56574 1.95497 2.25002 2.52099 3.18244 3.29493 3.45958 3.56261 3.67200 3.68693 3.76570 3.92429 4.02713 4.04272 4.17700 4.22327 4.24707 4.44509 4.47439 4.51771 4.53708 4.62921 4.64208 4.68467 4.70272 4.75245 4.86211 4.91303 4.95474 4.97848 5.02644 5.09158 5.13520 5.15206 5.17451 5.28506 5.34084 5.41832 5.43919 5.53974 5.67519 5.72887 5.80470 6.28418 6.35675 6.42112 7.08579 7.14793 7.16985 7.86249 8.39108 9.18865 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003177 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.069161 B = 8811.211628 C = 9645.292027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.129 4.129 3 C 0.138 3.862 4 H 0.092 0.908 5 C -0.103 4.103 6 C -0.108 4.108 7 H 0.111 0.889 8 C 0.523 3.477 9 O -0.568 6.568 10 N -0.602 5.602 11 C 0.082 3.918 12 C 0.146 3.854 13 C -0.128 4.128 14 C 0.143 3.857 15 N -0.608 5.608 16 C -0.266 4.266 17 H 0.064 0.936 18 C -0.043 4.043 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.278 1.278 24 C 0.184 3.816 25 C -0.134 4.134 26 C -0.127 4.127 27 C 0.524 3.476 28 O -0.601 6.601 29 N -0.703 5.703 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.015 0.985 44 H 0.057 0.943 45 H 0.250 0.750 46 H 0.002 0.998 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.111 0.889 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 -21.145 0.419 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.167 4.167 3 C 0.034 3.966 4 H 0.110 0.890 5 C -0.142 4.142 6 C -0.130 4.130 7 H 0.129 0.871 8 C 0.312 3.688 9 O -0.448 6.448 10 N -0.333 5.333 11 C -0.060 4.060 12 C 0.043 3.957 13 C -0.168 4.168 14 C 0.017 3.983 15 N -0.331 5.331 16 C -0.396 4.396 17 H 0.082 0.918 18 C -0.240 4.240 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.203 1.203 24 C 0.058 3.942 25 C -0.174 4.174 26 C -0.167 4.167 27 C 0.312 3.688 28 O -0.483 6.483 29 N -0.355 5.355 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.124 0.876 51 H 0.129 0.871 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.946 -21.273 0.257 21.296 hybrid contribution -0.153 1.389 0.134 1.404 sum -1.099 -19.885 0.391 19.919 Atomic orbital electron populations 1.21826 0.94908 1.02722 1.02023 1.21876 0.96762 0.93935 1.04115 1.21265 0.94523 0.94819 0.86005 0.88996 1.21742 0.93489 0.93716 1.05210 1.21444 0.92828 1.01305 0.97375 0.87087 1.20626 0.89606 0.82515 0.76056 1.90663 1.69501 1.34625 1.50023 1.48084 1.08895 1.06518 1.69755 1.21664 0.79274 1.03058 1.02021 1.21269 0.96116 0.82964 0.95378 1.22221 1.00265 0.96718 0.97559 1.21001 0.96631 0.91800 0.88844 1.44268 1.75713 1.07991 1.05146 1.19404 1.12163 0.85590 1.22468 0.91833 1.25825 0.95538 1.00777 1.01824 1.70149 1.15093 1.37455 1.34922 0.85423 0.77753 0.80036 0.77697 1.20289 1.22159 1.20349 1.20467 0.92976 0.91125 0.89678 1.22368 1.01300 0.96697 0.97058 1.21784 0.93636 1.05072 0.96208 1.20120 0.88542 0.77863 0.82322 1.90771 1.74802 1.53478 1.29286 1.45665 1.17950 1.45807 1.26067 0.91849 0.93142 0.91456 0.91326 0.88656 0.90391 0.88077 0.91804 0.90812 0.90816 0.88574 0.91499 0.90227 0.96740 0.92488 0.94086 0.97996 0.93227 0.91396 0.92264 0.87643 0.87064 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.75 71.98 0.70 -0.64 16 2 C -0.13 -1.18 5.58 30.59 0.17 -1.01 16 3 C 0.14 1.77 3.08 45.10 0.14 1.91 16 4 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.10 -1.62 3.95 30.68 0.12 -1.50 16 6 C -0.11 -2.16 1.72 -11.40 -0.02 -2.18 16 7 H 0.11 2.15 7.47 -2.38 -0.02 2.14 16 8 C 0.52 12.91 6.98 87.65 0.61 13.52 16 9 O -0.57 -16.64 15.46 -3.06 -0.05 -16.69 16 10 N -0.60 -14.98 2.76 -822.47 -2.27 -17.25 16 11 C 0.08 1.88 9.37 127.77 1.20 3.08 16 12 C 0.15 4.08 1.68 45.02 0.08 4.16 16 13 C -0.13 -3.79 5.04 30.67 0.15 -3.64 16 14 C 0.14 5.56 6.52 86.36 0.56 6.13 16 15 N -0.61 -28.85 2.97 -699.11 -2.08 -30.93 16 16 C -0.27 -14.14 9.54 84.03 0.80 -13.34 16 17 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 18 C -0.04 -2.36 4.90 84.86 0.42 -1.95 16 19 N -0.93 -53.68 11.43 21.65 0.25 -53.44 16 20 Si 0.96 43.87 29.58 68.60 2.03 45.90 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.18 8.21 5.27 86.36 0.46 8.66 16 25 C -0.13 -4.46 5.42 30.67 0.17 -4.29 16 26 C -0.13 -2.82 4.92 29.71 0.15 -2.68 16 27 C 0.52 13.14 7.71 87.74 0.68 13.82 16 28 O -0.60 -20.73 17.78 -3.05 -0.05 -20.79 16 29 N -0.70 -12.63 5.12 -446.79 -2.29 -14.92 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.47 6.63 -2.38 -0.02 0.46 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 36 H 0.10 1.49 7.97 -2.39 -0.02 1.48 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.68 6.82 -2.38 -0.02 1.66 16 39 H 0.07 1.72 7.27 -2.39 -0.02 1.70 16 40 H 0.10 2.66 4.04 -2.39 -0.01 2.65 16 41 H 0.07 2.01 7.59 -2.39 -0.02 1.99 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 45 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.05 2.55 6.33 -2.38 -0.02 2.53 16 48 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.06 2.02 6.98 -2.39 -0.02 2.00 16 50 H 0.11 2.62 5.48 -2.39 -0.01 2.61 16 51 H 0.11 2.31 8.09 -2.39 -0.02 2.30 16 52 H 0.40 6.72 6.97 -92.71 -0.65 6.08 16 Total: -1.00 -69.36 393.15 2.19 -67.17 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.27 Total: 20.89 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.38 Total: 20.04 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -6.39 Total: -116.54 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.10 Total: -37.48 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.36 2.19 -67.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005756093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.850 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds