Wall clock time and date at job start Tue Mar 31 2020 19:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46893 * 2 1 4 4 H 1.09004 * 109.87271 * 307.75595 * 3 2 1 5 5 C 1.54319 * 110.01001 * 68.85494 * 3 2 1 6 6 C 1.55163 * 102.94078 * 141.68530 * 5 3 2 7 7 C 1.55129 * 101.48409 * 324.33076 * 6 5 3 8 8 N 1.47022 * 109.88281 * 186.74307 * 3 2 1 9 9 C 1.34779 * 125.65007 * 61.44968 * 8 3 2 10 10 O 1.21351 * 119.99821 * 5.87405 * 9 8 3 11 11 C 1.49453 * 119.99806 * 185.88153 * 9 8 3 12 12 O 1.21345 * 120.00081 * 6.15561 * 11 9 8 13 13 N 1.34779 * 119.99644 * 186.16030 * 11 9 8 14 14 C 1.46500 * 119.99851 * 356.37156 * 13 11 9 15 15 C 1.46501 * 119.99785 * 176.37740 * 13 11 9 16 16 C 1.53046 * 109.45386 * 239.99640 * 15 13 11 17 17 C 1.53196 * 109.30756 * 178.61596 * 16 15 13 18 18 N 1.46926 * 108.77639 * 54.63460 * 17 16 15 19 19 C 1.36932 * 120.62819 * 126.37302 * 18 17 16 20 20 H 1.07995 * 120.00057 * 338.92154 * 19 18 17 21 21 C 1.38819 * 119.99693 * 158.92740 * 19 18 17 22 22 N 1.31615 * 120.00049 * 335.37977 * 21 19 18 23 23 Si 1.86799 * 119.99625 * 155.38543 * 21 19 18 24 24 H 1.48501 * 109.46998 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47512 * 59.99685 * 23 21 19 26 26 H 1.48503 * 109.47295 * 299.99447 * 23 21 19 27 27 C 1.46926 * 118.73655 * 306.63730 * 18 17 16 28 28 C 1.52767 * 109.00764 * 53.31742 * 27 18 17 29 29 H 1.08994 * 109.47285 * 304.14667 * 1 2 3 30 30 H 1.08996 * 109.47217 * 64.15213 * 1 2 3 31 31 H 1.09008 * 109.46824 * 184.14781 * 1 2 3 32 32 H 1.09002 * 109.46937 * 240.00217 * 2 1 3 33 33 H 1.08994 * 109.47395 * 119.99921 * 2 1 3 34 34 H 1.09005 * 110.72215 * 260.04312 * 5 3 2 35 35 H 1.08996 * 110.72409 * 23.14077 * 5 3 2 36 36 H 1.08999 * 111.00440 * 82.57375 * 6 5 3 37 37 H 1.09000 * 110.99948 * 206.38277 * 6 5 3 38 38 H 1.08999 * 110.49806 * 278.45471 * 7 6 5 39 39 H 1.08998 * 110.34157 * 156.06102 * 7 6 5 40 40 H 1.09001 * 109.47469 * 275.90881 * 14 13 11 41 41 H 1.08994 * 109.47786 * 35.91364 * 14 13 11 42 42 H 1.09006 * 109.46727 * 155.91517 * 14 13 11 43 43 H 1.08994 * 109.46263 * 359.96717 * 15 13 11 44 44 H 1.08998 * 109.49793 * 58.66565 * 16 15 13 45 45 H 1.08994 * 109.49930 * 298.56163 * 16 15 13 46 46 H 1.09000 * 109.58410 * 294.84564 * 17 16 15 47 47 H 1.08993 * 109.70329 * 174.49294 * 17 16 15 48 48 H 0.97001 * 119.99924 * 352.63444 * 22 21 19 49 49 H 1.09000 * 109.58139 * 173.14568 * 27 18 17 50 50 H 1.08995 * 109.59449 * 293.57111 * 27 18 17 51 51 H 1.08989 * 109.56441 * 185.54932 * 28 27 18 52 52 H 1.08998 * 109.35982 * 65.49014 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5717 2.0011 -0.8105 5 6 1.7228 2.1148 1.3524 6 6 2.9855 2.9770 1.6165 7 6 4.1037 2.0739 1.0331 8 7 3.5011 1.4564 -0.1623 9 6 4.1779 0.9784 -1.2253 10 8 3.5744 0.5816 -2.2005 11 6 5.6717 0.9369 -1.2030 12 8 6.2717 1.2276 -0.1891 13 7 6.3524 0.5767 -2.3091 14 6 5.6277 0.1494 -3.5084 15 6 7.8170 0.6123 -2.3119 16 6 8.3014 1.5743 -3.3991 17 6 9.8320 1.6354 -3.3762 18 7 10.3616 0.2703 -3.4986 19 6 11.2754 -0.0389 -4.4704 20 1 11.3646 0.5864 -5.3463 21 6 12.0870 -1.1563 -4.3296 22 7 12.3488 -1.6326 -3.1309 23 14 12.8077 -1.9836 -5.8414 24 1 13.6325 -3.1457 -5.4238 25 1 13.6568 -1.0140 -6.5789 26 1 11.7071 -2.4486 -6.7232 27 6 9.8876 -0.7578 -2.5621 28 6 8.3606 -0.7909 -2.5907 29 1 -0.3633 0.5768 0.8504 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3633 -1.0251 0.0743 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.8362 2.7438 1.2719 35 1 1.5931 1.3663 2.1341 36 1 2.9283 3.9267 1.0846 37 1 3.1322 3.1380 2.6845 38 1 4.3895 1.3070 1.7530 39 1 4.9692 2.6749 0.7541 40 1 5.3803 -0.9090 -3.4258 41 1 4.7107 0.7304 -3.6052 42 1 6.2532 0.3087 -4.3869 43 1 8.1738 0.9532 -1.3401 44 1 7.8948 2.5683 -3.2129 45 1 7.9660 1.2203 -4.3739 46 1 10.1661 2.0741 -2.4360 47 1 10.1881 2.2415 -4.2091 48 1 12.0651 -1.1442 -2.3423 49 1 10.2784 -1.7309 -2.8596 50 1 10.2264 -0.5184 -1.5542 51 1 7.9961 -1.4802 -1.8291 52 1 8.0246 -1.1226 -3.5731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006259611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:16 Heat of formation + Delta-G solvation = -33.558693 kcal Electronic energy + Delta-G solvation = -30877.255466 eV Core-core repulsion = 26877.868134 eV Total energy + Delta-G solvation = -3999.387332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.09903 -39.49330 -37.89983 -37.57217 -35.35291 -33.78941 -32.63180 -31.86211 -30.45382 -29.45015 -28.23469 -26.98447 -26.02019 -24.70204 -23.41634 -22.52304 -22.34442 -21.61838 -20.47577 -19.17569 -18.97725 -17.57475 -17.32231 -16.97737 -16.64530 -15.92884 -15.55844 -14.99654 -14.71202 -14.37922 -14.09994 -14.07965 -13.80504 -13.67661 -13.51819 -13.37638 -13.32875 -13.01637 -12.83978 -12.68102 -12.52773 -12.44027 -12.27169 -11.94292 -11.72586 -11.64289 -11.56482 -11.15661 -11.09235 -11.06232 -10.80978 -10.72469 -10.65371 -10.39419 -10.11432 -10.10601 -9.95144 -9.37172 -9.18824 -9.01910 -8.52023 -8.36961 -6.97043 -6.05105 -3.19148 1.42087 2.18823 3.17174 3.32509 3.50332 3.53668 3.71678 4.03111 4.18820 4.34442 4.43306 4.59700 4.76076 4.82698 4.91241 5.02400 5.12501 5.14292 5.25867 5.30900 5.34462 5.36730 5.38506 5.48107 5.50825 5.57826 5.59266 5.69615 5.71149 5.72576 5.78777 5.80347 5.89246 5.90438 6.01708 6.09913 6.12328 6.17217 6.30958 6.38844 6.46678 6.61884 6.66021 6.75714 7.02252 7.05541 7.16940 7.30343 7.62804 7.92603 8.01549 8.54319 9.08651 9.83311 10.24503 11.22273 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.002433 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.727252 B =11506.675100 C =11901.840543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.080 0.920 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.103 3.897 8 N -0.591 5.591 9 C 0.523 3.477 10 O -0.515 6.515 11 C 0.502 3.498 12 O -0.525 6.525 13 N -0.573 5.573 14 C 0.064 3.936 15 C 0.143 3.857 16 C -0.139 4.139 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.343 4.343 20 H 0.061 0.939 21 C -0.029 4.029 22 N -0.921 5.921 23 Si 1.062 2.938 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.145 3.855 28 C -0.139 4.139 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.019 0.981 47 H 0.060 0.940 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.018 0.982 51 H 0.054 0.946 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.787 7.571 8.420 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.019 4.019 8 N -0.326 5.326 9 C 0.307 3.693 10 O -0.391 6.391 11 C 0.284 3.716 12 O -0.402 6.402 13 N -0.305 5.305 14 C -0.078 4.078 15 C 0.041 3.959 16 C -0.179 4.179 17 C 0.025 3.975 18 N -0.325 5.325 19 C -0.472 4.472 20 H 0.078 0.922 21 C -0.229 4.229 22 N -0.562 5.562 23 Si 0.892 3.108 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.019 3.981 28 C -0.179 4.179 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.114 0.886 50 H 0.036 0.964 51 H 0.073 0.927 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.805 6.172 7.790 24.876 hybrid contribution -0.935 1.310 0.440 1.668 sum -23.740 7.482 8.229 26.216 Atomic orbital electron populations 1.21704 0.94829 1.02002 1.01906 1.21905 0.96443 0.95921 1.03233 1.21748 0.79608 0.97029 0.98269 0.90212 1.22746 0.98534 0.99292 0.95953 1.22908 0.94282 0.98395 1.01952 1.22578 0.96592 0.96415 0.86334 1.48386 1.07355 1.58452 1.18373 1.20014 0.88568 0.78618 0.82090 1.90656 1.70250 1.47106 1.31131 1.19950 0.87789 0.79562 0.84319 1.90716 1.69864 1.48546 1.31082 1.48056 1.07711 1.62274 1.12479 1.22329 0.97937 1.01047 0.86493 1.21340 0.75975 0.97501 1.01071 1.22391 0.99440 0.97602 0.98450 1.20826 0.89842 0.87998 0.98879 1.44198 1.48067 1.03105 1.37081 1.20060 1.14531 1.14367 0.98231 0.92150 1.25750 0.96256 0.98343 1.02582 1.70776 1.44392 1.43050 0.98017 0.83565 0.75971 0.76533 0.74726 1.21081 1.22059 1.22134 1.21010 0.88933 0.95931 0.92238 1.22357 0.99970 0.94389 1.01198 0.92530 0.92515 0.92404 0.90605 0.91704 0.89879 0.90161 0.90502 0.89510 0.90656 0.88898 0.92410 0.88135 0.91024 0.88512 0.92693 0.91610 0.96287 0.92155 0.91890 0.88637 0.96411 0.92727 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.83 37.16 0.37 -0.60 16 2 C -0.14 -1.20 5.43 -26.73 -0.15 -1.35 16 3 C 0.14 1.20 2.84 -66.95 -0.19 1.01 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.13 -0.76 5.63 -24.90 -0.14 -0.90 16 6 C -0.14 -0.88 7.10 -24.46 -0.17 -1.06 16 7 C 0.10 1.01 5.79 -2.41 -0.01 1.00 16 8 N -0.59 -6.74 3.06 -163.38 -0.50 -7.25 16 9 C 0.52 7.36 7.50 -11.58 -0.09 7.27 16 10 O -0.51 -7.69 12.34 5.50 0.07 -7.62 16 11 C 0.50 7.96 7.66 -11.58 -0.09 7.88 16 12 O -0.52 -9.09 13.41 5.50 0.07 -9.01 16 13 N -0.57 -9.16 2.76 -174.39 -0.48 -9.64 16 14 C 0.06 0.91 8.61 59.85 0.51 1.42 16 15 C 0.14 2.55 2.47 -67.89 -0.17 2.38 16 16 C -0.14 -2.45 5.32 -26.61 -0.14 -2.59 16 17 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 18 N -0.60 -14.94 2.94 -172.58 -0.51 -15.45 16 19 C -0.34 -9.48 9.57 -15.06 -0.14 -9.62 16 20 H 0.06 1.66 7.90 -52.49 -0.41 1.25 16 21 C -0.03 -0.81 4.78 -17.43 -0.08 -0.89 16 22 N -0.92 -27.46 12.11 55.49 0.67 -26.79 16 23 Si 1.06 25.13 29.98 -169.99 -5.10 20.03 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.15 3.43 4.60 -3.93 -0.02 3.41 16 28 C -0.14 -2.72 5.32 -26.83 -0.14 -2.86 16 29 H 0.06 0.30 7.43 -51.93 -0.39 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.08 0.86 6.86 -51.93 -0.36 0.50 16 33 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.44 7.75 -51.93 -0.40 0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.05 6.70 -51.93 -0.35 0.70 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.40 5.36 -51.94 -0.28 1.12 16 42 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 43 H 0.10 1.88 6.90 -51.93 -0.36 1.52 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.17 6.72 -51.93 -0.35 0.82 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 48 H 0.27 8.09 6.45 -40.82 -0.26 7.82 16 49 H 0.10 2.54 5.77 -51.93 -0.30 2.24 16 50 H 0.02 0.43 7.90 -51.93 -0.41 0.02 16 51 H 0.05 1.02 8.14 -51.94 -0.42 0.60 16 52 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -31.43 392.29 -9.42 -40.85 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.87 Total: 1.33 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.68 Total: 7.64 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.82 Total: -59.12 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.14 Total: -16.64 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.10 Total: 20.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.43 -9.42 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006259611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.289 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds