Wall clock time and date at job start Tue Mar 31 2020 19:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46893 * 2 1 4 4 H 1.09004 * 109.87271 * 307.75595 * 3 2 1 5 5 C 1.54319 * 110.01001 * 68.85494 * 3 2 1 6 6 C 1.55163 * 102.94078 * 141.68530 * 5 3 2 7 7 C 1.55129 * 101.48409 * 324.33076 * 6 5 3 8 8 N 1.47022 * 109.88281 * 186.74307 * 3 2 1 9 9 C 1.34779 * 125.65007 * 61.44968 * 8 3 2 10 10 O 1.21351 * 119.99821 * 5.87405 * 9 8 3 11 11 C 1.49453 * 119.99806 * 185.88153 * 9 8 3 12 12 O 1.21345 * 120.00081 * 6.15561 * 11 9 8 13 13 N 1.34779 * 119.99644 * 186.16030 * 11 9 8 14 14 C 1.46500 * 119.99851 * 356.37156 * 13 11 9 15 15 C 1.46501 * 119.99785 * 176.37740 * 13 11 9 16 16 C 1.53046 * 109.45386 * 239.99640 * 15 13 11 17 17 C 1.53196 * 109.30756 * 178.61596 * 16 15 13 18 18 N 1.46926 * 108.77639 * 54.63460 * 17 16 15 19 19 C 1.36932 * 120.62819 * 126.37302 * 18 17 16 20 20 H 1.07995 * 120.00057 * 338.92154 * 19 18 17 21 21 C 1.38819 * 119.99693 * 158.92740 * 19 18 17 22 22 N 1.31615 * 120.00049 * 335.37977 * 21 19 18 23 23 Si 1.86799 * 119.99625 * 155.38543 * 21 19 18 24 24 H 1.48501 * 109.46998 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47512 * 59.99685 * 23 21 19 26 26 H 1.48503 * 109.47295 * 299.99447 * 23 21 19 27 27 C 1.46926 * 118.73655 * 306.63730 * 18 17 16 28 28 C 1.52767 * 109.00764 * 53.31742 * 27 18 17 29 29 H 1.08994 * 109.47285 * 304.14667 * 1 2 3 30 30 H 1.08996 * 109.47217 * 64.15213 * 1 2 3 31 31 H 1.09008 * 109.46824 * 184.14781 * 1 2 3 32 32 H 1.09002 * 109.46937 * 240.00217 * 2 1 3 33 33 H 1.08994 * 109.47395 * 119.99921 * 2 1 3 34 34 H 1.09005 * 110.72215 * 260.04312 * 5 3 2 35 35 H 1.08996 * 110.72409 * 23.14077 * 5 3 2 36 36 H 1.08999 * 111.00440 * 82.57375 * 6 5 3 37 37 H 1.09000 * 110.99948 * 206.38277 * 6 5 3 38 38 H 1.08999 * 110.49806 * 278.45471 * 7 6 5 39 39 H 1.08998 * 110.34157 * 156.06102 * 7 6 5 40 40 H 1.09001 * 109.47469 * 275.90881 * 14 13 11 41 41 H 1.08994 * 109.47786 * 35.91364 * 14 13 11 42 42 H 1.09006 * 109.46727 * 155.91517 * 14 13 11 43 43 H 1.08994 * 109.46263 * 359.96717 * 15 13 11 44 44 H 1.08998 * 109.49793 * 58.66565 * 16 15 13 45 45 H 1.08994 * 109.49930 * 298.56163 * 16 15 13 46 46 H 1.09000 * 109.58410 * 294.84564 * 17 16 15 47 47 H 1.08993 * 109.70329 * 174.49294 * 17 16 15 48 48 H 0.97001 * 119.99924 * 352.63444 * 22 21 19 49 49 H 1.09000 * 109.58139 * 173.14568 * 27 18 17 50 50 H 1.08995 * 109.59449 * 293.57111 * 27 18 17 51 51 H 1.08989 * 109.56441 * 185.54932 * 28 27 18 52 52 H 1.08998 * 109.35982 * 65.49014 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5717 2.0011 -0.8105 5 6 1.7228 2.1148 1.3524 6 6 2.9855 2.9770 1.6165 7 6 4.1037 2.0739 1.0331 8 7 3.5011 1.4564 -0.1623 9 6 4.1779 0.9784 -1.2253 10 8 3.5744 0.5816 -2.2005 11 6 5.6717 0.9369 -1.2030 12 8 6.2717 1.2276 -0.1891 13 7 6.3524 0.5767 -2.3091 14 6 5.6277 0.1494 -3.5084 15 6 7.8170 0.6123 -2.3119 16 6 8.3014 1.5743 -3.3991 17 6 9.8320 1.6354 -3.3762 18 7 10.3616 0.2703 -3.4986 19 6 11.2754 -0.0389 -4.4704 20 1 11.3646 0.5864 -5.3463 21 6 12.0870 -1.1563 -4.3296 22 7 12.3488 -1.6326 -3.1309 23 14 12.8077 -1.9836 -5.8414 24 1 13.6325 -3.1457 -5.4238 25 1 13.6568 -1.0140 -6.5789 26 1 11.7071 -2.4486 -6.7232 27 6 9.8876 -0.7578 -2.5621 28 6 8.3606 -0.7909 -2.5907 29 1 -0.3633 0.5768 0.8504 30 1 -0.3633 0.4480 -0.9248 31 1 -0.3633 -1.0251 0.0743 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.8362 2.7438 1.2719 35 1 1.5931 1.3663 2.1341 36 1 2.9283 3.9267 1.0846 37 1 3.1322 3.1380 2.6845 38 1 4.3895 1.3070 1.7530 39 1 4.9692 2.6749 0.7541 40 1 5.3803 -0.9090 -3.4258 41 1 4.7107 0.7304 -3.6052 42 1 6.2532 0.3087 -4.3869 43 1 8.1738 0.9532 -1.3401 44 1 7.8948 2.5683 -3.2129 45 1 7.9660 1.2203 -4.3739 46 1 10.1661 2.0741 -2.4360 47 1 10.1881 2.2415 -4.2091 48 1 12.0651 -1.1442 -2.3423 49 1 10.2784 -1.7309 -2.8596 50 1 10.2264 -0.5184 -1.5542 51 1 7.9961 -1.4802 -1.8291 52 1 8.0246 -1.1226 -3.5731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006259611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:15 Heat of formation + Delta-G solvation = -51.488862 kcal Electronic energy + Delta-G solvation = -30878.032976 eV Core-core repulsion = 26877.868134 eV Total energy + Delta-G solvation = -4000.164843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.20701 -40.62840 -39.22579 -38.81303 -36.88891 -34.53311 -34.37908 -32.63772 -32.18542 -31.26054 -28.89063 -28.18288 -27.52536 -26.10454 -24.51752 -24.04532 -23.43986 -22.76831 -21.46661 -20.63437 -20.21192 -19.48658 -18.43173 -18.13041 -17.73633 -17.10428 -16.57673 -16.31227 -16.11090 -15.65752 -15.45078 -15.35259 -15.15601 -15.15484 -14.74432 -14.52089 -14.38450 -14.22034 -14.10511 -13.93620 -13.56517 -13.46296 -13.44876 -13.03565 -12.87130 -12.69504 -12.58973 -12.49055 -12.37207 -12.15309 -12.13067 -11.98702 -11.91466 -11.75032 -11.70668 -11.62697 -11.46839 -11.29187 -10.52082 -10.39378 -10.02816 -9.70972 -9.03059 -8.24375 -5.36113 0.24810 1.09872 1.59681 1.66872 1.85574 1.99290 2.23499 2.66317 3.01606 3.19275 3.47986 3.55548 3.61857 3.68524 3.83704 3.85334 4.10448 4.13290 4.18609 4.19993 4.25233 4.29778 4.44257 4.44559 4.52977 4.54697 4.57441 4.67692 4.71283 4.79618 4.83248 4.87467 4.88941 4.94795 4.95254 4.97198 5.07236 5.08684 5.12274 5.13522 5.17443 5.22430 5.27519 5.32132 5.36176 5.43620 5.78244 5.94722 6.11126 6.36759 6.49224 6.82582 7.00144 7.75477 8.17311 9.01241 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.002433 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.727252 B =11506.675100 C =11901.840543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.129 3.871 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.096 3.904 8 N -0.587 5.587 9 C 0.521 3.479 10 O -0.529 6.529 11 C 0.498 3.502 12 O -0.543 6.543 13 N -0.575 5.575 14 C 0.069 3.931 15 C 0.153 3.847 16 C -0.123 4.123 17 C 0.148 3.852 18 N -0.618 5.618 19 C -0.348 4.348 20 H 0.061 0.939 21 C -0.082 4.082 22 N -0.948 5.948 23 Si 1.114 2.886 24 H -0.294 1.294 25 H -0.276 1.276 26 H -0.280 1.280 27 C 0.153 3.847 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.255 0.745 49 H 0.063 0.937 50 H 0.003 0.997 51 H 0.060 0.940 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.408 8.759 8.476 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.027 3.973 4 H 0.096 0.904 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.026 4.026 8 N -0.320 5.320 9 C 0.304 3.696 10 O -0.407 6.407 11 C 0.281 3.719 12 O -0.421 6.421 13 N -0.307 5.307 14 C -0.072 4.072 15 C 0.051 3.949 16 C -0.163 4.163 17 C 0.022 3.978 18 N -0.342 5.342 19 C -0.477 4.477 20 H 0.079 0.921 21 C -0.277 4.277 22 N -0.592 5.592 23 Si 0.938 3.062 24 H -0.220 1.220 25 H -0.202 1.202 26 H -0.206 1.206 27 C 0.027 3.973 28 C -0.164 4.164 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.021 0.979 51 H 0.079 0.921 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.482 7.403 7.865 27.677 hybrid contribution -0.141 0.998 0.508 1.129 sum -25.623 8.402 8.373 28.235 Atomic orbital electron populations 1.21673 0.92885 1.02578 1.02749 1.21862 0.98089 0.95546 1.01703 1.22035 0.77707 0.97386 1.00166 0.90365 1.22779 0.99100 0.99492 0.94142 1.22899 0.92766 0.97731 1.03029 1.22705 0.97493 0.96697 0.85730 1.48548 1.08731 1.56924 1.17805 1.19620 0.87604 0.79405 0.82929 1.90643 1.70032 1.48189 1.31826 1.20381 0.88859 0.78870 0.83811 1.90706 1.70546 1.49176 1.31702 1.47990 1.06798 1.62555 1.13311 1.22378 0.97958 1.01170 0.85737 1.21001 0.77432 0.96176 1.00326 1.22194 0.96777 0.98815 0.98514 1.20973 0.91938 0.86071 0.98843 1.44427 1.48028 1.04908 1.36866 1.20336 1.14468 1.14265 0.98639 0.92145 1.27099 0.96978 0.99421 1.04164 1.70890 1.46393 1.43576 0.98332 0.82873 0.75787 0.75569 0.71951 1.22043 1.20157 1.20594 1.20794 0.91410 0.94087 0.91036 1.22124 0.96888 0.95925 1.01471 0.90474 0.92646 0.92214 0.93612 0.91752 0.87395 0.89095 0.90012 0.87361 0.91025 0.90740 0.92312 0.87573 0.90519 0.90070 0.90387 0.91155 0.96509 0.91803 0.93489 0.91879 0.97937 0.92116 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.83 71.98 0.71 -0.84 16 2 C -0.13 -2.17 5.43 30.60 0.17 -2.01 16 3 C 0.13 2.02 2.84 45.34 0.13 2.15 16 4 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.12 -1.00 5.63 31.78 0.18 -0.82 16 6 C -0.13 -1.26 7.10 32.07 0.23 -1.03 16 7 C 0.10 1.77 5.79 86.93 0.50 2.27 16 8 N -0.59 -12.81 3.06 -789.17 -2.42 -15.23 16 9 C 0.52 14.42 7.50 87.27 0.65 15.07 16 10 O -0.53 -15.52 12.34 -3.25 -0.04 -15.56 16 11 C 0.50 15.67 7.66 87.27 0.67 16.34 16 12 O -0.54 -18.89 13.41 -3.23 -0.04 -18.94 16 13 N -0.58 -18.00 2.76 -824.01 -2.27 -20.28 16 14 C 0.07 1.87 8.61 127.77 1.10 2.97 16 15 C 0.15 5.43 2.47 45.02 0.11 5.54 16 16 C -0.12 -4.21 5.32 30.68 0.16 -4.04 16 17 C 0.15 6.13 6.52 86.36 0.56 6.69 16 18 N -0.62 -31.17 2.94 -699.93 -2.06 -33.23 16 19 C -0.35 -19.37 9.57 84.04 0.80 -18.56 16 20 H 0.06 3.31 7.90 -2.91 -0.02 3.29 16 21 C -0.08 -4.66 4.78 84.86 0.41 -4.25 16 22 N -0.95 -58.27 12.11 21.65 0.26 -58.01 16 23 Si 1.11 50.97 29.98 68.60 2.06 53.02 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.15 7.47 4.60 86.22 0.40 7.86 16 28 C -0.12 -4.89 5.32 30.53 0.16 -4.72 16 29 H 0.08 0.54 7.43 -2.39 -0.02 0.52 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 1.02 6.86 -2.39 -0.02 1.01 16 33 H 0.06 1.03 7.99 -2.39 -0.02 1.01 16 34 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.09 0.63 7.75 -2.39 -0.02 0.61 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.66 6.70 -2.39 -0.02 1.65 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 2.83 5.36 -2.47 -0.01 2.81 16 42 H 0.08 2.00 6.47 -2.38 -0.02 1.98 16 43 H 0.08 3.17 6.90 -2.39 -0.02 3.16 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 2.37 6.72 -2.39 -0.02 2.35 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.58 7.90 -2.39 -0.02 2.56 16 48 H 0.25 15.97 6.45 -92.71 -0.60 15.37 16 49 H 0.06 3.49 5.77 -2.39 -0.01 3.48 16 50 H 0.00 0.14 7.90 -2.39 -0.02 0.12 16 51 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.06 2.53 7.72 -2.39 -0.02 2.51 16 Total: -1.00 -69.56 392.29 3.49 -66.06 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.07 Total: 19.53 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.94 Total: 22.63 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -6.49 Total: -126.75 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.08 Total: -34.50 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.06 Total: 53.02 kcal Total: -69.56 3.49 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006259611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.574 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds