Wall clock time and date at job start Tue Mar 31 2020 19:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47254 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99907 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99793 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63134 * 359.97438 * 6 4 3 8 8 C 1.53186 * 108.77343 * 126.41370 * 7 6 4 9 9 C 1.53042 * 109.31484 * 54.63812 * 8 7 6 10 10 C 1.53044 * 109.53200 * 298.63344 * 9 8 7 11 11 H 1.08993 * 109.49886 * 301.37781 * 10 9 8 12 12 C 1.50711 * 109.49314 * 181.31605 * 10 9 8 13 13 O 1.21278 * 119.99529 * 239.99802 * 12 10 9 14 14 N 1.34777 * 119.99951 * 59.99994 * 12 10 9 15 15 C 1.46496 * 119.99619 * 179.97438 * 14 12 10 16 16 H 1.08994 * 112.85202 * 336.19185 * 15 14 12 17 17 C 1.53777 * 113.68901 * 107.46624 * 15 14 12 18 18 C 1.53785 * 87.08241 * 139.98818 * 17 15 14 19 19 H 1.09002 * 113.61570 * 220.01842 * 18 17 15 20 20 N 1.46500 * 113.68813 * 89.12417 * 18 17 15 21 21 C 1.36936 * 119.99618 * 105.94148 * 20 18 17 22 22 H 1.07990 * 120.00427 * 359.97438 * 21 20 18 23 23 C 1.38824 * 119.99622 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99593 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99988 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46812 * 90.00369 * 25 23 21 27 27 H 1.48502 * 109.47126 * 209.99830 * 25 23 21 28 28 H 1.48501 * 109.47366 * 330.00666 * 25 23 21 29 29 C 1.53781 * 87.08241 * 334.56547 * 18 17 15 30 30 C 1.46921 * 120.62944 * 180.02562 * 6 4 3 31 31 H 1.09006 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47435 * 299.99802 * 1 2 3 33 33 H 1.08996 * 109.47439 * 60.00581 * 1 2 3 34 34 H 1.08998 * 109.47238 * 239.99837 * 2 1 3 35 35 H 1.08996 * 109.47439 * 119.99419 * 2 1 3 36 36 H 1.09005 * 109.46819 * 59.99821 * 3 2 1 37 37 H 1.09004 * 109.46428 * 300.00303 * 3 2 1 38 38 H 1.09002 * 109.58481 * 6.62854 * 7 6 4 39 39 H 1.08997 * 109.58327 * 246.20511 * 7 6 4 40 40 H 1.08994 * 109.50267 * 294.67979 * 8 7 6 41 41 H 1.08998 * 109.49627 * 174.58502 * 8 7 6 42 42 H 1.08998 * 109.46141 * 178.61637 * 9 8 7 43 43 H 1.08996 * 109.46103 * 58.65033 * 9 8 7 44 44 H 0.97001 * 119.99504 * 359.97438 * 14 12 10 45 45 H 1.08999 * 113.61947 * 25.44244 * 17 15 14 46 46 H 1.08997 * 113.61348 * 254.53459 * 17 15 14 47 47 H 0.96998 * 120.00149 * 285.93056 * 20 18 17 48 48 H 0.96996 * 119.99509 * 179.97438 * 24 23 21 49 49 H 1.09000 * 113.61578 * 139.97748 * 29 18 17 50 50 H 1.09001 * 113.61682 * 270.80327 * 29 18 17 51 51 H 1.09007 * 109.58736 * 113.79592 * 30 6 4 52 52 H 1.09005 * 109.58802 * 353.37742 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1533 0.3923 0.0015 6 7 4.2207 2.6099 0.0013 7 6 3.5001 3.8903 0.0008 8 6 4.0076 4.7421 1.1684 9 6 5.5290 4.8772 1.0727 10 6 6.1728 3.4921 1.1696 11 1 5.8889 3.0241 2.1120 12 6 7.6724 3.6291 1.1076 13 8 8.2947 3.0856 0.2198 14 7 8.3218 4.3555 2.0389 15 6 9.7795 4.4881 1.9789 16 1 10.2569 3.6715 1.4374 17 6 10.2554 5.8819 1.5367 18 6 11.3616 5.7544 2.5974 19 1 11.5540 6.6794 3.1410 20 7 12.5855 5.1226 2.0984 21 6 13.6995 5.8821 1.8592 22 1 13.6758 6.9468 2.0379 23 6 14.8595 5.2832 1.3868 24 7 15.9301 6.0134 1.1564 25 14 14.9007 3.4414 1.0783 26 1 14.4845 3.1643 -0.3201 27 1 16.2797 2.9341 1.2940 28 1 13.9708 2.7615 2.0154 29 6 10.4275 4.7856 3.3416 30 6 5.6899 2.6261 0.0013 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.6765 1.9563 -0.8900 38 1 2.4318 3.7083 0.1184 39 1 3.6827 4.4119 -0.9387 40 1 3.7436 4.2621 2.1107 41 1 3.5511 5.7308 1.1228 42 1 5.8901 5.5033 1.8886 43 1 5.7937 5.3348 0.1195 44 1 7.8238 4.7904 2.7487 45 1 9.5382 6.6754 1.7470 46 1 10.6321 5.9106 0.5143 47 1 12.6068 4.1662 1.9376 48 1 16.7406 5.5949 0.8267 49 1 10.9431 3.9292 3.7761 50 1 9.7583 5.2791 4.0464 51 1 6.0507 3.0450 -0.9381 52 1 6.0665 1.6101 0.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021086375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:41 Heat of formation + Delta-G solvation = -53.864081 kcal Electronic energy + Delta-G solvation = -29367.866538 eV Core-core repulsion = 25367.598698 eV Total energy + Delta-G solvation = -4000.267840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90101 -39.88477 -38.44268 -37.33085 -34.84861 -34.25661 -33.48547 -32.47456 -31.68710 -30.30674 -28.59180 -25.66442 -25.31528 -25.25778 -23.80250 -22.45532 -22.40061 -21.52403 -20.21428 -19.31239 -18.98535 -17.74978 -17.57916 -16.94400 -16.46361 -16.16853 -16.03413 -15.37744 -15.01210 -14.81399 -14.76751 -14.37082 -14.26881 -14.03173 -13.72603 -13.44292 -13.27976 -13.18984 -13.04528 -12.72814 -12.44873 -12.23376 -12.18091 -12.11081 -12.07370 -11.93469 -11.74003 -11.46546 -11.39268 -11.17129 -11.05112 -10.95191 -10.84653 -10.38907 -10.34914 -10.11206 -9.92399 -9.69315 -9.58682 -9.03038 -8.96386 -8.81130 -7.32188 -5.80339 -3.17070 2.28929 2.51787 2.59085 3.25633 3.38745 3.42790 3.47192 4.03167 4.18976 4.32889 4.40347 4.43281 4.51921 4.55906 4.57600 4.68670 4.87169 4.87742 4.95013 4.99693 5.03008 5.05238 5.11238 5.14494 5.18474 5.25326 5.31505 5.35302 5.38893 5.45257 5.52202 5.61585 5.67062 5.72088 5.73979 5.74707 5.81404 5.89415 5.96121 6.06634 6.10000 6.22304 6.47379 6.55105 6.64976 6.86611 7.01265 7.52715 7.83764 7.96053 8.23152 8.38910 9.16231 9.88797 10.06975 11.37431 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.001997 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.867041 B =14014.933154 C =14766.202436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.537 6.537 6 N -0.615 5.615 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.121 4.121 11 H 0.099 0.901 12 C 0.517 3.483 13 O -0.536 6.536 14 N -0.715 5.715 15 C 0.121 3.879 16 H 0.110 0.890 17 C -0.181 4.181 18 C 0.177 3.823 19 H 0.076 0.924 20 N -0.730 5.730 21 C -0.250 4.250 22 H 0.093 0.907 23 C 0.009 3.991 24 N -0.930 5.930 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.165 4.165 30 C 0.131 3.869 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.397 0.603 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.363 0.637 48 H 0.260 0.740 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.466 -3.412 1.744 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.413 6.413 6 N -0.349 5.349 7 C -0.020 4.020 8 C -0.172 4.172 9 C -0.150 4.150 10 C -0.144 4.144 11 H 0.117 0.883 12 C 0.302 3.698 13 O -0.412 6.412 14 N -0.365 5.365 15 C 0.017 3.983 16 H 0.128 0.872 17 C -0.223 4.223 18 C 0.064 3.936 19 H 0.094 0.906 20 N -0.370 5.370 21 C -0.379 4.379 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.577 5.577 25 Si 0.712 3.288 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.205 4.205 30 C 0.008 3.992 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.231 0.769 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.196 0.804 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.097 0.903 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -34.461 -4.203 1.065 34.732 hybrid contribution -0.093 -0.904 0.107 0.915 sum -34.554 -5.107 1.172 34.949 Atomic orbital electron populations 1.21791 0.95399 1.02070 1.01727 1.21304 0.95294 0.94632 1.03695 1.21755 0.91675 1.00264 1.04169 1.20818 0.90410 0.83063 0.75628 1.90726 1.70404 1.30901 1.49294 1.48179 1.06907 1.06051 1.73805 1.21819 0.96765 0.84148 0.99243 1.21923 0.95781 1.00580 0.98878 1.21532 0.95057 0.94843 1.03570 1.21684 0.92550 0.98416 1.01729 0.88288 1.20374 0.89145 0.78377 0.81916 1.90747 1.68846 1.46769 1.34843 1.46093 1.08466 1.52190 1.29751 1.22671 0.77991 0.99288 0.98302 0.87221 1.24267 0.99993 0.95302 1.02765 1.20853 0.85058 0.95110 0.92546 0.90595 1.42537 1.09214 1.06526 1.78698 1.19083 0.88213 0.93242 1.37406 0.88957 1.24668 0.95777 0.97339 1.00986 1.69698 1.02390 1.34524 1.51132 0.86593 0.76917 0.86840 0.78458 1.20842 1.21588 1.20286 1.23902 0.99342 1.01326 0.95912 1.21351 0.78341 1.02042 0.97451 0.92338 0.92698 0.92677 0.91179 0.91206 0.88913 0.88910 0.89411 0.90901 0.91119 0.89934 0.90753 0.90767 0.76942 0.90861 0.90834 0.80370 0.92953 0.90988 0.89883 0.90328 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.32 16 2 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 3 C -0.14 -0.80 4.05 -27.88 -0.11 -0.91 16 4 C 0.51 5.01 7.70 -10.99 -0.08 4.93 16 5 O -0.54 -7.68 15.39 5.56 0.09 -7.59 16 6 N -0.62 -5.18 2.97 -172.75 -0.51 -5.69 16 7 C 0.10 0.48 6.34 -3.71 -0.02 0.46 16 8 C -0.13 -0.55 6.08 -26.61 -0.16 -0.71 16 9 C -0.11 -0.70 5.08 -26.69 -0.14 -0.84 16 10 C -0.12 -1.11 2.68 -91.62 -0.25 -1.36 16 11 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 12 C 0.52 6.75 7.16 -10.98 -0.08 6.67 16 13 O -0.54 -9.60 15.52 5.56 0.09 -9.51 16 14 N -0.71 -8.36 5.24 -53.01 -0.28 -8.64 16 15 C 0.12 1.84 4.13 -67.12 -0.28 1.56 16 16 H 0.11 2.02 7.46 -51.93 -0.39 1.63 16 17 C -0.18 -2.94 7.68 -25.92 -0.20 -3.14 16 18 C 0.18 3.24 4.55 -67.12 -0.31 2.94 16 19 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 20 N -0.73 -17.13 5.12 -52.63 -0.27 -17.40 16 21 C -0.25 -7.01 10.45 -15.06 -0.16 -7.17 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 24 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 25 Si 0.88 22.52 27.73 -169.99 -4.71 17.81 16 26 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 29 C -0.17 -2.38 7.57 -25.91 -0.20 -2.57 16 30 C 0.13 1.42 5.07 -3.69 -0.02 1.40 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.09 0.35 7.69 -51.93 -0.40 -0.05 16 37 H 0.09 0.37 7.94 -51.93 -0.41 -0.04 16 38 H 0.09 0.22 5.93 -51.93 -0.31 -0.09 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.39 7.53 -51.93 -0.39 0.00 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.40 3.28 8.13 -40.82 -0.33 2.95 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.36 8.55 5.76 -40.82 -0.24 8.31 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 51 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 52 H 0.10 1.37 7.01 -51.93 -0.36 1.01 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -36.12 409.63 -9.69 -45.80 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -9.17 Total: 7.26 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.86 Total: 0.22 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.29 Total: -60.16 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.17 Total: -17.10 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.12 -9.69 -45.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021086375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.060 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds