Wall clock time and date at job start Tue Mar 31 2020 19:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 C 1.50706 * 109.47238 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99507 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63018 * 0.02562 * 6 4 3 8 8 C 1.53192 * 108.77618 * 233.58090 * 7 6 4 9 9 C 1.53034 * 109.31486 * 305.37187 * 8 7 6 10 10 C 1.53037 * 109.53901 * 61.36487 * 9 8 7 11 11 H 1.08999 * 109.50004 * 58.58615 * 10 9 8 12 12 C 1.50703 * 109.49594 * 178.65327 * 10 9 8 13 13 O 1.21281 * 120.00030 * 119.99949 * 12 10 9 14 14 N 1.34780 * 119.99980 * 299.99239 * 12 10 9 15 15 C 1.46495 * 120.00049 * 180.02562 * 14 12 10 16 16 H 1.08996 * 112.85160 * 334.66832 * 15 14 12 17 17 C 1.53780 * 113.61400 * 105.86814 * 15 14 12 18 18 C 1.54047 * 86.98938 * 89.16016 * 17 15 14 19 19 H 1.09005 * 113.69319 * 270.87732 * 18 17 15 20 20 N 1.46497 * 113.62319 * 139.97620 * 18 17 15 21 21 C 1.36940 * 119.99725 * 107.50466 * 20 18 17 22 22 H 1.07994 * 120.00062 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99829 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46729 * 90.00759 * 25 23 21 27 27 H 1.48500 * 109.46993 * 210.00107 * 25 23 21 28 28 H 1.48494 * 109.47413 * 330.00432 * 25 23 21 29 29 C 1.53780 * 87.07754 * 25.43198 * 18 17 15 30 30 C 1.46930 * 120.62718 * 179.72379 * 6 4 3 31 31 H 1.08992 * 109.47554 * 299.99696 * 1 2 3 32 32 H 1.08996 * 109.47261 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47372 * 240.00310 * 2 1 3 35 35 H 1.09004 * 109.47108 * 120.00054 * 2 1 3 36 36 H 1.09001 * 109.46832 * 59.99979 * 3 2 1 37 37 H 1.09000 * 109.47611 * 300.00276 * 3 2 1 38 38 H 1.08999 * 109.59180 * 353.37728 * 7 6 4 39 39 H 1.09005 * 109.58530 * 113.80199 * 7 6 4 40 40 H 1.09008 * 109.49197 * 65.31956 * 8 7 6 41 41 H 1.08997 * 109.49861 * 185.41100 * 8 7 6 42 42 H 1.09003 * 109.46020 * 181.38010 * 9 8 7 43 43 H 1.09000 * 109.46116 * 301.33645 * 9 8 7 44 44 H 0.97001 * 119.99554 * 0.02562 * 14 12 10 45 45 H 1.09000 * 113.61274 * 203.66514 * 17 15 14 46 46 H 1.08997 * 113.61281 * 334.56510 * 17 15 14 47 47 H 0.97004 * 120.00386 * 287.50845 * 20 18 17 48 48 H 0.96994 * 119.99462 * 179.97438 * 24 23 21 49 49 H 1.09002 * 113.61804 * 220.02973 * 29 18 17 50 50 H 1.08995 * 113.69448 * 89.13115 * 29 18 17 51 51 H 1.09000 * 109.58312 * 246.20289 * 30 6 4 52 52 H 1.08997 * 109.58682 * 6.62761 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.5002 3.8901 0.0019 8 6 4.0087 4.7428 -1.1648 9 6 5.5300 4.8776 -1.0677 10 6 6.1739 3.4927 -1.1650 11 1 5.8902 3.0250 -2.1078 12 6 7.6734 3.6297 -1.1025 13 8 8.2955 3.0858 -0.2147 14 7 8.3231 4.3564 -2.0333 15 6 9.7807 4.4891 -1.9729 16 1 10.1761 4.3605 -0.9653 17 6 10.5195 3.6580 -3.0352 18 6 10.3932 4.8814 -3.9628 19 1 9.4765 4.8912 -4.5526 20 7 11.5906 5.1333 -4.7684 21 6 11.5795 4.8702 -6.1123 22 1 10.6879 4.4773 -6.5782 23 6 12.7142 5.1083 -6.8756 24 7 13.8010 5.5866 -6.3075 25 14 12.6992 4.7487 -8.7086 26 1 12.2521 5.9574 -9.4464 27 1 14.0670 4.3764 -9.1511 28 1 11.7668 3.6266 -8.9853 29 6 10.3157 5.7402 -2.6895 30 6 5.6900 2.6259 0.0080 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6765 1.9563 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 2.4320 3.7084 -0.1167 39 1 3.6821 4.4114 0.9418 40 1 3.7454 4.2632 -2.1076 41 1 3.5521 5.7314 -1.1190 42 1 5.8918 5.5043 -1.8829 43 1 5.7940 5.3347 -0.1140 44 1 7.8254 4.7915 -2.7431 45 1 11.5481 3.4192 -2.7651 46 1 9.9580 2.7888 -3.3777 47 1 12.3913 5.4864 -4.3500 48 1 14.5939 5.7527 -6.8408 49 1 9.5897 6.5508 -2.7530 50 1 11.2880 6.0705 -2.3241 51 1 6.0464 3.0463 0.9484 52 1 6.0671 1.6097 -0.1067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021086376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:44 Heat of formation + Delta-G solvation = -58.372761 kcal Electronic energy + Delta-G solvation = -29254.063773 eV Core-core repulsion = 25253.600422 eV Total energy + Delta-G solvation = -4000.463351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87688 -39.88467 -38.30347 -37.26119 -34.81927 -34.13498 -33.49102 -32.37807 -31.62817 -29.86938 -28.54105 -25.62988 -25.17369 -25.11431 -24.06415 -22.39367 -22.24781 -21.58146 -20.26318 -19.28712 -18.98416 -17.70832 -17.16900 -16.95379 -16.34326 -16.05971 -15.84941 -15.42057 -14.95502 -14.83094 -14.74388 -14.29770 -14.20976 -13.94377 -13.69129 -13.53523 -13.41287 -13.21148 -13.04718 -12.66761 -12.42271 -12.17688 -12.07744 -11.90193 -11.87180 -11.71122 -11.65340 -11.42500 -11.36324 -11.14100 -11.01717 -10.91957 -10.80122 -10.34470 -10.23558 -10.08732 -9.94103 -9.75068 -9.58554 -9.01218 -8.93034 -8.79808 -7.00360 -5.82024 -3.11101 2.31579 2.53991 2.60131 3.23748 3.40149 3.45721 3.47464 4.05858 4.21667 4.36542 4.43546 4.46318 4.54702 4.55751 4.58956 4.72320 4.89819 4.95839 4.98389 5.05586 5.05919 5.14762 5.17640 5.20105 5.28185 5.33649 5.39253 5.42282 5.47112 5.49513 5.55958 5.64375 5.75095 5.76746 5.83340 5.84637 5.90737 5.92335 6.09734 6.14508 6.22339 6.30523 6.48622 6.61358 6.68133 7.03529 7.05919 7.55286 7.65249 7.86448 8.23990 8.36339 9.47624 10.04875 10.39184 11.40235 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.001921 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.658319 B =14570.144346 C =15138.291967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.536 6.536 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.134 4.134 9 C -0.112 4.112 10 C -0.122 4.122 11 H 0.101 0.899 12 C 0.522 3.478 13 O -0.540 6.540 14 N -0.704 5.704 15 C 0.115 3.885 16 H 0.095 0.905 17 C -0.176 4.176 18 C 0.167 3.833 19 H 0.073 0.927 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.158 4.158 30 C 0.133 3.867 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.400 0.600 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.266 -1.223 14.895 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.413 6.413 6 N -0.350 5.350 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.150 4.150 10 C -0.144 4.144 11 H 0.120 0.880 12 C 0.307 3.693 13 O -0.417 6.417 14 N -0.354 5.354 15 C 0.010 3.990 16 H 0.113 0.887 17 C -0.219 4.219 18 C 0.055 3.945 19 H 0.091 0.909 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.198 4.198 30 C 0.010 3.990 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.234 0.766 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.110 0.890 51 H 0.096 0.904 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.489 -2.223 15.322 31.549 hybrid contribution 0.187 0.306 -1.342 1.389 sum -27.302 -1.917 13.980 30.733 Atomic orbital electron populations 1.21789 0.95414 1.02063 1.01722 1.21304 0.95286 0.94638 1.03701 1.21754 0.91685 1.00263 1.04168 1.20818 0.90412 0.83066 0.75610 1.90725 1.70400 1.30893 1.49261 1.48182 1.06919 1.06053 1.73833 1.21816 0.96789 0.84133 0.99185 1.21929 0.95750 1.00587 0.98969 1.21536 0.95144 0.94867 1.03488 1.21765 0.92325 0.98454 1.01888 0.88048 1.20314 0.89123 0.78314 0.81576 1.90715 1.68959 1.46611 1.35418 1.45712 1.07805 1.52161 1.29753 1.21828 0.78899 0.98460 0.99825 0.88723 1.24346 1.00179 0.99658 0.97683 1.21663 0.91762 0.91952 0.89145 0.90914 1.42399 1.10607 1.76232 1.05734 1.19288 0.97696 1.36150 0.84568 0.91135 1.24774 0.96067 1.01765 0.98230 1.69658 1.02658 1.50581 1.35003 0.86186 0.76810 0.77834 0.85328 1.21685 1.21712 1.20734 1.23846 1.01305 0.96067 0.98584 1.21426 0.78330 1.02045 0.97213 0.92710 0.92674 0.92345 0.91163 0.91206 0.88952 0.88875 0.89417 0.90975 0.90999 0.89931 0.90636 0.90871 0.76581 0.89594 0.92445 0.78001 0.93413 0.91811 0.89028 0.90408 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.11 -0.76 5.22 -26.73 -0.14 -0.90 16 3 C -0.14 -0.82 4.05 -27.88 -0.11 -0.93 16 4 C 0.51 5.06 7.70 -10.98 -0.08 4.98 16 5 O -0.54 -7.71 15.39 5.56 0.09 -7.63 16 6 N -0.62 -5.18 2.97 -172.47 -0.51 -5.69 16 7 C 0.10 0.49 6.34 -3.71 -0.02 0.47 16 8 C -0.13 -0.60 6.08 -26.61 -0.16 -0.76 16 9 C -0.11 -0.72 5.07 -26.69 -0.14 -0.86 16 10 C -0.12 -1.14 2.69 -91.40 -0.25 -1.39 16 11 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 12 C 0.52 6.73 7.16 -10.98 -0.08 6.65 16 13 O -0.54 -9.14 15.55 5.56 0.09 -9.05 16 14 N -0.70 -8.64 5.15 -53.02 -0.27 -8.91 16 15 C 0.12 1.71 4.30 -67.12 -0.29 1.42 16 16 H 0.09 1.50 7.50 -51.93 -0.39 1.11 16 17 C -0.18 -3.12 7.70 -25.78 -0.20 -3.32 16 18 C 0.17 3.16 4.37 -66.98 -0.29 2.86 16 19 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 20 N -0.71 -17.45 5.40 -52.50 -0.28 -17.74 16 21 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 25 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C -0.16 -2.43 7.57 -25.92 -0.20 -2.63 16 30 C 0.13 1.41 5.09 -3.46 -0.02 1.39 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.37 7.94 -51.93 -0.41 -0.04 16 37 H 0.09 0.38 7.69 -51.93 -0.40 -0.02 16 38 H 0.09 0.23 5.93 -51.93 -0.31 -0.08 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.43 7.53 -51.93 -0.39 0.04 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.40 3.99 8.10 -40.82 -0.33 3.66 16 45 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.39 10.06 7.93 -40.82 -0.32 9.73 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 51 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 52 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 LS Contribution 412.83 15.07 6.22 6.22 Total: -1.00 -34.60 412.83 -10.04 -44.64 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -9.21 Total: 8.82 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.85 Total: -0.69 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.34 Total: -59.46 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.17 Total: -16.68 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.60 -10.04 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021086376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.731 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds