Wall clock time and date at job start Tue Mar 31 2020 19:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 C 1.50706 * 109.47238 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99507 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63018 * 0.02562 * 6 4 3 8 8 C 1.53192 * 108.77618 * 233.58090 * 7 6 4 9 9 C 1.53034 * 109.31486 * 305.37187 * 8 7 6 10 10 C 1.53037 * 109.53901 * 61.36487 * 9 8 7 11 11 H 1.08999 * 109.50004 * 58.58615 * 10 9 8 12 12 C 1.50703 * 109.49594 * 178.65327 * 10 9 8 13 13 O 1.21281 * 120.00030 * 119.99949 * 12 10 9 14 14 N 1.34780 * 119.99980 * 299.99239 * 12 10 9 15 15 C 1.46495 * 120.00049 * 180.02562 * 14 12 10 16 16 H 1.08996 * 112.85160 * 334.66832 * 15 14 12 17 17 C 1.53780 * 113.61400 * 105.86814 * 15 14 12 18 18 C 1.54047 * 86.98938 * 89.16016 * 17 15 14 19 19 H 1.09005 * 113.69319 * 270.87732 * 18 17 15 20 20 N 1.46497 * 113.62319 * 139.97620 * 18 17 15 21 21 C 1.36940 * 119.99725 * 107.50466 * 20 18 17 22 22 H 1.07994 * 120.00062 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99829 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46729 * 90.00759 * 25 23 21 27 27 H 1.48500 * 109.46993 * 210.00107 * 25 23 21 28 28 H 1.48494 * 109.47413 * 330.00432 * 25 23 21 29 29 C 1.53780 * 87.07754 * 25.43198 * 18 17 15 30 30 C 1.46930 * 120.62718 * 179.72379 * 6 4 3 31 31 H 1.08992 * 109.47554 * 299.99696 * 1 2 3 32 32 H 1.08996 * 109.47261 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47372 * 240.00310 * 2 1 3 35 35 H 1.09004 * 109.47108 * 120.00054 * 2 1 3 36 36 H 1.09001 * 109.46832 * 59.99979 * 3 2 1 37 37 H 1.09000 * 109.47611 * 300.00276 * 3 2 1 38 38 H 1.08999 * 109.59180 * 353.37728 * 7 6 4 39 39 H 1.09005 * 109.58530 * 113.80199 * 7 6 4 40 40 H 1.09008 * 109.49197 * 65.31956 * 8 7 6 41 41 H 1.08997 * 109.49861 * 185.41100 * 8 7 6 42 42 H 1.09003 * 109.46020 * 181.38010 * 9 8 7 43 43 H 1.09000 * 109.46116 * 301.33645 * 9 8 7 44 44 H 0.97001 * 119.99554 * 0.02562 * 14 12 10 45 45 H 1.09000 * 113.61274 * 203.66514 * 17 15 14 46 46 H 1.08997 * 113.61281 * 334.56510 * 17 15 14 47 47 H 0.97004 * 120.00386 * 287.50845 * 20 18 17 48 48 H 0.96994 * 119.99462 * 179.97438 * 24 23 21 49 49 H 1.09002 * 113.61804 * 220.02973 * 29 18 17 50 50 H 1.08995 * 113.69448 * 89.13115 * 29 18 17 51 51 H 1.09000 * 109.58312 * 246.20289 * 30 6 4 52 52 H 1.08997 * 109.58682 * 6.62761 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.5002 3.8901 0.0019 8 6 4.0087 4.7428 -1.1648 9 6 5.5300 4.8776 -1.0677 10 6 6.1739 3.4927 -1.1650 11 1 5.8902 3.0250 -2.1078 12 6 7.6734 3.6297 -1.1025 13 8 8.2955 3.0858 -0.2147 14 7 8.3231 4.3564 -2.0333 15 6 9.7807 4.4891 -1.9729 16 1 10.1761 4.3605 -0.9653 17 6 10.5195 3.6580 -3.0352 18 6 10.3932 4.8814 -3.9628 19 1 9.4765 4.8912 -4.5526 20 7 11.5906 5.1333 -4.7684 21 6 11.5795 4.8702 -6.1123 22 1 10.6879 4.4773 -6.5782 23 6 12.7142 5.1083 -6.8756 24 7 13.8010 5.5866 -6.3075 25 14 12.6992 4.7487 -8.7086 26 1 12.2521 5.9574 -9.4464 27 1 14.0670 4.3764 -9.1511 28 1 11.7668 3.6266 -8.9853 29 6 10.3157 5.7402 -2.6895 30 6 5.6900 2.6259 0.0080 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6765 1.9563 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 2.4320 3.7084 -0.1167 39 1 3.6821 4.4114 0.9418 40 1 3.7454 4.2632 -2.1076 41 1 3.5521 5.7314 -1.1190 42 1 5.8918 5.5043 -1.8829 43 1 5.7940 5.3347 -0.1140 44 1 7.8254 4.7915 -2.7431 45 1 11.5481 3.4192 -2.7651 46 1 9.9580 2.7888 -3.3777 47 1 12.3913 5.4864 -4.3500 48 1 14.5939 5.7527 -6.8408 49 1 9.5897 6.5508 -2.7530 50 1 11.2880 6.0705 -2.3241 51 1 6.0464 3.0463 0.9484 52 1 6.0671 1.6097 -0.1067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021086376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:43 Heat of formation + Delta-G solvation = -81.916554 kcal Electronic energy + Delta-G solvation = -29255.084708 eV Core-core repulsion = 25253.600422 eV Total energy + Delta-G solvation = -4001.484286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73568 -40.90679 -39.52428 -38.11392 -35.79756 -35.36953 -34.54203 -33.58753 -32.30177 -31.68513 -29.08038 -26.66425 -26.50538 -26.18750 -25.31540 -23.70546 -22.91295 -22.33429 -21.17583 -20.40709 -19.91035 -19.17270 -18.46782 -17.85983 -17.16934 -16.98081 -16.78897 -16.59610 -16.26638 -15.81702 -15.61278 -15.34921 -15.32935 -14.99815 -14.88047 -14.39800 -14.24331 -13.99990 -13.85413 -13.70112 -13.50130 -13.41367 -13.33071 -12.87561 -12.81631 -12.67454 -12.60686 -12.53099 -12.20783 -12.17640 -11.96742 -11.85637 -11.81344 -11.75275 -11.64978 -11.62233 -11.22266 -10.93439 -10.85067 -10.74281 -10.05308 -9.70560 -8.99680 -7.95654 -5.24114 1.47184 1.48611 1.54677 1.56872 1.59031 1.81294 2.27083 2.55799 3.35727 3.43980 3.58189 3.68477 3.75804 3.78778 3.87064 3.95273 3.97630 4.07632 4.11896 4.14163 4.21509 4.31162 4.31827 4.46980 4.58197 4.65685 4.71270 4.72462 4.72621 4.78614 4.84046 4.88294 4.89774 4.91226 4.93578 5.10452 5.11657 5.12378 5.19382 5.24438 5.25841 5.28424 5.38380 5.44375 5.50021 5.51094 5.69152 6.26391 6.39340 6.52672 7.14874 7.21342 7.32683 8.09363 8.31567 9.27511 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.001921 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.658319 B =14570.144346 C =15138.291967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.502 3.498 5 O -0.596 6.596 6 N -0.611 5.611 7 C 0.095 3.905 8 C -0.128 4.128 9 C -0.110 4.110 10 C -0.109 4.109 11 H 0.107 0.893 12 C 0.520 3.480 13 O -0.585 6.585 14 N -0.693 5.693 15 C 0.134 3.866 16 H 0.087 0.913 17 C -0.177 4.177 18 C 0.154 3.846 19 H 0.084 0.916 20 N -0.727 5.727 21 C -0.244 4.244 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.271 1.271 29 C -0.138 4.138 30 C 0.135 3.865 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.415 0.585 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.066 0.762 14.521 35.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.293 3.707 5 O -0.476 6.476 6 N -0.344 5.344 7 C -0.025 4.025 8 C -0.166 4.166 9 C -0.148 4.148 10 C -0.131 4.131 11 H 0.125 0.875 12 C 0.307 3.693 13 O -0.465 6.465 14 N -0.344 5.344 15 C 0.028 3.972 16 H 0.105 0.895 17 C -0.219 4.219 18 C 0.044 3.956 19 H 0.102 0.898 20 N -0.364 5.364 21 C -0.376 4.376 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.801 3.199 26 H -0.211 1.211 27 H -0.225 1.225 28 H -0.196 1.196 29 C -0.178 4.178 30 C 0.011 3.989 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.088 0.912 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.385 -0.197 14.950 34.764 hybrid contribution 1.338 -0.361 -1.137 1.793 sum -30.047 -0.558 13.812 33.074 Atomic orbital electron populations 1.21744 0.93341 1.02307 1.02958 1.21284 0.96965 0.95187 1.01682 1.21803 0.88209 1.00006 1.06763 1.21669 0.92144 0.82492 0.74443 1.90702 1.71792 1.33090 1.52042 1.48297 1.05881 1.07402 1.72773 1.22196 0.98047 0.82224 1.00080 1.21939 0.93890 1.01998 0.98759 1.21600 0.96682 0.92436 1.04071 1.21697 0.89579 1.00478 1.01333 0.87475 1.20975 0.90578 0.77111 0.80630 1.90702 1.70185 1.48310 1.37260 1.45578 1.06653 1.52052 1.30118 1.21490 0.80228 0.97050 0.98479 0.89458 1.24225 0.99675 0.99297 0.98687 1.22010 0.90216 0.93476 0.89870 0.89773 1.42596 1.11941 1.76470 1.05407 1.19704 0.97623 1.34380 0.85920 0.90391 1.25575 0.96035 1.02831 1.02442 1.69814 1.03188 1.52676 1.36285 0.85161 0.76361 0.77926 0.80438 1.21120 1.22541 1.19585 1.23635 1.01913 0.96525 0.95705 1.21160 0.80271 0.99939 0.97514 0.91376 0.91405 0.92736 0.93345 0.93320 0.86125 0.85989 0.86380 0.89926 0.90763 0.87100 0.89231 0.90933 0.74774 0.91436 0.93077 0.79385 0.94066 0.89016 0.89564 0.91233 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.11 -1.48 5.22 30.59 0.16 -1.32 16 3 C -0.13 -1.20 4.05 29.85 0.12 -1.08 16 4 C 0.50 9.69 7.70 87.66 0.67 10.36 16 5 O -0.60 -18.23 15.39 -3.02 -0.05 -18.28 16 6 N -0.61 -9.47 2.97 -817.98 -2.43 -11.90 16 7 C 0.10 0.54 6.34 86.36 0.55 1.08 16 8 C -0.13 -0.57 6.08 30.67 0.19 -0.38 16 9 C -0.11 -1.06 5.07 30.62 0.16 -0.90 16 10 C -0.11 -1.91 2.69 -11.30 -0.03 -1.94 16 11 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 12 C 0.52 13.13 7.16 87.66 0.63 13.75 16 13 O -0.58 -20.29 15.55 -3.03 -0.05 -20.34 16 14 N -0.69 -15.85 5.15 -440.03 -2.27 -18.12 16 15 C 0.13 3.85 4.30 45.52 0.20 4.05 16 16 H 0.09 2.73 7.50 -2.39 -0.02 2.72 16 17 C -0.18 -6.26 7.70 31.21 0.24 -6.02 16 18 C 0.15 5.68 4.37 45.61 0.20 5.88 16 19 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 20 N -0.73 -35.72 5.40 -320.02 -1.73 -37.45 16 21 C -0.24 -13.31 9.97 84.03 0.84 -12.47 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 24 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 25 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 C -0.14 -4.01 7.57 31.12 0.24 -3.78 16 30 C 0.14 2.93 5.09 86.52 0.44 3.37 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.05 0.82 8.10 -2.38 -0.02 0.80 16 36 H 0.12 0.49 7.94 -2.39 -0.02 0.47 16 37 H 0.12 0.48 7.69 -2.39 -0.02 0.46 16 38 H 0.12 -0.01 5.93 -2.39 -0.01 -0.02 16 39 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.09 0.65 7.53 -2.39 -0.02 0.63 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.41 7.06 8.10 -92.71 -0.75 6.31 16 45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.37 19.87 7.93 -92.71 -0.73 19.13 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16 51 H 0.07 1.59 7.97 -2.39 -0.02 1.57 16 52 H 0.06 1.78 7.00 -2.39 -0.02 1.77 16 Total: -1.00 -79.85 412.83 0.99 -78.86 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.57 Total: 31.86 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.77 Total: 6.34 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -6.14 Total: -126.18 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.09 Total: -38.62 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.85 0.99 -78.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021086376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.060 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds