Wall clock time and date at job start Tue Mar 31 2020 19:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46766 * 2 1 4 4 C 1.50709 * 109.46855 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99681 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.46922 * 120.63347 * 6.05605 * 6 4 3 8 8 C 1.53192 * 108.78033 * 233.63413 * 7 6 4 9 9 C 1.53042 * 109.31019 * 305.36900 * 8 7 6 10 10 C 1.53034 * 109.54240 * 61.36140 * 9 8 7 11 11 C 1.46923 * 120.62929 * 186.08893 * 6 4 3 12 12 H 1.09005 * 109.58611 * 246.15296 * 11 6 4 13 13 C 1.50697 * 109.59012 * 6.57392 * 11 6 4 14 14 O 1.21284 * 119.99997 * 61.45231 * 13 11 6 15 15 N 1.34778 * 120.00528 * 241.46396 * 13 11 6 16 16 C 1.46502 * 120.00220 * 180.02562 * 15 13 11 17 17 H 1.08996 * 112.85016 * 23.79347 * 16 15 13 18 18 C 1.53777 * 113.61412 * 154.99357 * 16 15 13 19 19 C 1.53789 * 87.07933 * 139.97811 * 18 16 15 20 20 H 1.08998 * 113.60851 * 219.93245 * 19 18 16 21 21 N 1.46495 * 113.61471 * 89.11692 * 19 18 16 22 22 C 1.36937 * 120.00288 * 154.99756 * 21 19 18 23 23 H 1.08000 * 119.99798 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00162 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99678 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47002 * 89.99794 * 26 24 22 28 28 H 1.48496 * 109.47126 * 209.99706 * 26 24 22 29 29 H 1.48504 * 109.47387 * 329.99927 * 26 24 22 30 30 C 1.53781 * 113.61066 * 252.49314 * 16 15 13 31 31 H 1.09002 * 109.47210 * 299.99632 * 1 2 3 32 32 H 1.08996 * 109.47376 * 59.99909 * 1 2 3 33 33 H 1.09008 * 109.47009 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47210 * 240.00368 * 2 1 3 35 35 H 1.08996 * 109.47376 * 120.00091 * 2 1 3 36 36 H 1.08996 * 109.47625 * 60.00334 * 3 2 1 37 37 H 1.08997 * 109.46837 * 299.99831 * 3 2 1 38 38 H 1.08998 * 109.58726 * 353.42723 * 7 6 4 39 39 H 1.09007 * 109.58695 * 113.70456 * 7 6 4 40 40 H 1.09005 * 109.49650 * 65.31498 * 8 7 6 41 41 H 1.08995 * 109.49958 * 185.37999 * 8 7 6 42 42 H 1.09006 * 109.45385 * 181.38547 * 9 8 7 43 43 H 1.08998 * 109.46049 * 301.35040 * 9 8 7 44 44 H 1.09000 * 109.50086 * 178.68074 * 10 9 8 45 45 H 1.09011 * 109.49607 * 58.58245 * 10 9 8 46 46 H 0.97000 * 119.99773 * 359.97438 * 15 13 11 47 47 H 1.09001 * 113.61589 * 254.52555 * 18 16 15 48 48 H 1.08997 * 113.61439 * 25.34808 * 18 16 15 49 49 H 0.97001 * 119.99988 * 335.00046 * 21 19 18 50 50 H 0.97006 * 119.99715 * 180.02562 * 25 24 22 51 51 H 1.09000 * 113.61804 * 334.56137 * 30 16 15 52 52 H 1.08994 * 113.61573 * 105.46798 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 3.5064 3.8866 0.1342 8 6 3.9066 4.8005 -1.0283 9 6 5.4308 4.9339 -1.0655 10 6 6.0597 3.5576 -1.2943 11 6 5.6837 2.6297 -0.1349 12 1 6.1306 2.9988 0.7882 13 6 6.1838 1.2370 -0.4199 14 8 5.8284 0.6589 -1.4251 15 7 7.0259 0.6336 0.4423 16 6 7.5125 -0.7201 0.1648 17 1 7.4825 -0.9717 -0.8953 18 6 8.8583 -1.0405 0.8362 19 6 8.2887 -2.4382 1.1316 20 1 8.5546 -2.8185 2.1178 21 7 8.5330 -3.4094 0.0624 22 6 8.5668 -4.7482 0.3481 23 1 8.4129 -5.0881 1.3616 24 6 8.7989 -5.6685 -0.6649 25 7 8.9869 -5.2541 -1.8999 26 14 8.8443 -7.4947 -0.2752 27 1 7.4792 -8.0637 -0.4101 28 1 9.7618 -8.1799 -1.2207 29 1 9.3278 -7.6925 1.1149 30 6 6.8928 -1.7955 1.0728 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6765 1.9563 -0.8900 38 1 2.4314 3.7086 0.1057 39 1 3.7738 4.3571 1.0805 40 1 3.5561 4.3704 -1.9665 41 1 3.4581 5.7840 -0.8889 42 1 5.7169 5.6034 -1.8767 43 1 5.7829 5.3407 -0.1176 44 1 7.1440 3.6568 -1.3441 45 1 5.6888 3.1392 -2.2301 46 1 7.3104 1.0960 1.2461 47 1 9.7004 -1.0495 0.1442 48 1 9.0519 -0.4486 1.7307 49 1 8.6709 -3.1041 -0.8479 50 1 9.1487 -5.8973 -2.6079 51 1 6.5485 -1.4109 2.0329 52 1 6.1482 -2.4138 0.5717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021086617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:13 Heat of formation + Delta-G solvation = -42.728641 kcal Electronic energy + Delta-G solvation = -30732.957141 eV Core-core repulsion = 26733.172170 eV Total energy + Delta-G solvation = -3999.784971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01285 -39.05409 -37.82988 -37.28339 -34.50530 -33.80247 -33.14829 -32.53688 -31.55613 -29.54946 -28.29468 -25.92751 -24.90885 -24.57575 -23.77159 -22.68123 -22.12809 -20.85666 -20.40373 -19.18911 -18.47893 -17.46868 -17.22493 -16.51603 -16.34561 -15.86226 -15.51888 -14.89125 -14.77505 -14.70039 -14.31953 -14.22104 -14.04906 -13.76308 -13.66311 -13.27123 -13.10159 -13.03189 -12.75618 -12.52736 -12.15950 -11.93001 -11.86414 -11.78504 -11.72083 -11.53592 -11.41742 -11.29105 -11.19641 -11.01305 -10.85721 -10.79689 -10.69313 -10.12369 -10.02611 -9.73720 -9.59662 -9.49353 -9.22515 -8.84404 -8.79894 -8.37017 -6.89249 -5.70044 -2.99194 2.46313 2.63600 3.35896 3.47779 3.49172 3.53532 3.55497 4.30497 4.37049 4.50117 4.58892 4.64352 4.69663 4.71510 4.84677 4.85291 4.94742 5.05198 5.13796 5.23529 5.27334 5.30056 5.35964 5.40486 5.44741 5.48594 5.49119 5.54425 5.59137 5.65254 5.66808 5.71875 5.91059 6.00055 6.03841 6.04682 6.13882 6.20147 6.26244 6.28555 6.40961 6.57158 6.82888 6.91503 7.05074 7.19236 7.25674 7.77585 7.94954 8.14313 8.48481 8.76193 9.58827 10.16927 10.51113 11.52410 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002855 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.771859 B = 9803.358615 C =11203.938106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.501 3.499 5 O -0.485 6.485 6 N -0.611 5.611 7 C 0.111 3.889 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.123 4.123 11 C 0.129 3.871 12 H 0.081 0.919 13 C 0.531 3.469 14 O -0.523 6.523 15 N -0.716 5.716 16 C 0.138 3.862 17 H 0.109 0.891 18 C -0.166 4.166 19 C 0.169 3.831 20 H 0.065 0.935 21 N -0.706 5.706 22 C -0.241 4.241 23 H 0.072 0.928 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.174 4.174 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.389 0.611 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.386 0.614 50 H 0.255 0.745 51 H 0.064 0.936 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 26.833 6.489 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.288 3.712 5 O -0.357 6.357 6 N -0.349 5.349 7 C -0.012 4.012 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.162 4.162 11 C 0.022 3.978 12 H 0.099 0.901 13 C 0.317 3.683 14 O -0.399 6.399 15 N -0.366 5.366 16 C 0.034 3.966 17 H 0.127 0.873 18 C -0.206 4.206 19 C 0.056 3.944 20 H 0.083 0.917 21 N -0.344 5.344 22 C -0.372 4.372 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.216 4.216 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.222 0.778 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.220 0.780 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.389 25.579 5.792 29.446 hybrid contribution 0.086 -0.394 0.266 0.483 sum -13.303 25.185 6.058 29.120 Atomic orbital electron populations 1.21778 0.95568 1.02055 1.01402 1.21306 0.95094 0.94529 1.04078 1.21690 0.91536 1.00302 1.03654 1.20915 0.90570 0.83278 0.76394 1.90879 1.68202 1.30369 1.46209 1.48022 1.05349 1.06534 1.74951 1.21742 0.97154 0.83697 0.98598 1.21952 0.96703 0.99740 0.99233 1.21501 0.95034 0.96565 1.02353 1.21833 1.01340 0.94576 0.98444 1.21159 0.81704 0.95395 0.99554 0.90075 1.19687 0.78420 0.86203 0.84034 1.90708 1.55952 1.64849 1.28352 1.45917 1.48643 1.17557 1.24524 1.22445 0.93917 0.79631 1.00624 0.87321 1.23910 0.96880 0.99597 1.00214 1.20947 0.92418 0.87711 0.93277 0.91663 1.42187 1.84187 1.02073 1.05977 1.19275 1.41224 0.82637 0.94100 0.91010 1.24773 1.02637 0.98093 0.95436 1.69675 1.55448 1.33181 0.99575 0.86167 0.77362 0.85400 0.77117 1.21700 1.21800 1.20741 1.24183 1.00966 0.98042 0.98427 0.92904 0.92825 0.92302 0.90883 0.91150 0.89340 0.89195 0.89410 0.91217 0.91162 0.90542 0.91154 0.91607 0.90373 0.90154 0.77819 0.91106 0.90588 0.78007 0.93468 0.91744 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.11 -1.24 5.22 -26.73 -0.14 -1.38 16 3 C -0.13 -1.23 4.06 -27.88 -0.11 -1.34 16 4 C 0.50 6.66 7.39 -10.98 -0.08 6.58 16 5 O -0.48 -8.97 11.75 -19.11 -0.22 -9.19 16 6 N -0.61 -6.39 2.97 -166.54 -0.49 -6.89 16 7 C 0.11 0.67 6.35 -3.71 -0.02 0.65 16 8 C -0.14 -0.76 6.08 -26.61 -0.16 -0.92 16 9 C -0.12 -0.72 5.88 -26.69 -0.16 -0.88 16 10 C -0.12 -1.17 5.31 -26.62 -0.14 -1.31 16 11 C 0.13 1.45 3.31 -68.76 -0.23 1.22 16 12 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 13 C 0.53 8.65 4.37 -10.99 -0.05 8.61 16 14 O -0.52 -11.17 14.21 -19.11 -0.27 -11.44 16 15 N -0.72 -10.99 5.35 -53.02 -0.28 -11.27 16 16 C 0.14 2.59 4.12 -67.12 -0.28 2.32 16 17 H 0.11 2.47 7.46 -51.93 -0.39 2.08 16 18 C -0.17 -2.89 7.58 -25.92 -0.20 -3.08 16 19 C 0.17 3.61 4.56 -67.12 -0.31 3.30 16 20 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 21 N -0.71 -18.81 5.31 -52.64 -0.28 -19.09 16 22 C -0.24 -7.00 9.97 -15.06 -0.15 -7.15 16 23 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 26 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 C -0.17 -3.52 7.68 -25.92 -0.20 -3.71 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.09 0.59 7.69 -51.93 -0.40 0.19 16 37 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.09 0.39 5.93 -51.93 -0.31 0.09 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.97 7.93 -51.92 -0.41 0.56 16 46 H 0.39 4.61 8.57 -40.82 -0.35 4.26 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 49 H 0.39 10.99 7.90 -40.82 -0.32 10.66 16 50 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 51 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 408.43 15.07 6.16 6.16 Total: -1.00 -37.45 408.43 -10.95 -48.40 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -9.31 Total: 12.24 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.95 Total: 1.51 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.33 Total: -65.85 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.50 Total: -20.63 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.45 -10.95 -48.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021086617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.676 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds