Wall clock time and date at job start Tue Mar 31 2020 19:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46766 * 2 1 4 4 C 1.50709 * 109.46855 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99681 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.46922 * 120.63347 * 6.05605 * 6 4 3 8 8 C 1.53192 * 108.78033 * 233.63413 * 7 6 4 9 9 C 1.53042 * 109.31019 * 305.36900 * 8 7 6 10 10 C 1.53034 * 109.54240 * 61.36140 * 9 8 7 11 11 C 1.46923 * 120.62929 * 186.08893 * 6 4 3 12 12 H 1.09005 * 109.58611 * 246.15296 * 11 6 4 13 13 C 1.50697 * 109.59012 * 6.57392 * 11 6 4 14 14 O 1.21284 * 119.99997 * 61.45231 * 13 11 6 15 15 N 1.34778 * 120.00528 * 241.46396 * 13 11 6 16 16 C 1.46502 * 120.00220 * 180.02562 * 15 13 11 17 17 H 1.08996 * 112.85016 * 23.79347 * 16 15 13 18 18 C 1.53777 * 113.61412 * 154.99357 * 16 15 13 19 19 C 1.53789 * 87.07933 * 139.97811 * 18 16 15 20 20 H 1.08998 * 113.60851 * 219.93245 * 19 18 16 21 21 N 1.46495 * 113.61471 * 89.11692 * 19 18 16 22 22 C 1.36937 * 120.00288 * 154.99756 * 21 19 18 23 23 H 1.08000 * 119.99798 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00162 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99678 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47002 * 89.99794 * 26 24 22 28 28 H 1.48496 * 109.47126 * 209.99706 * 26 24 22 29 29 H 1.48504 * 109.47387 * 329.99927 * 26 24 22 30 30 C 1.53781 * 113.61066 * 252.49314 * 16 15 13 31 31 H 1.09002 * 109.47210 * 299.99632 * 1 2 3 32 32 H 1.08996 * 109.47376 * 59.99909 * 1 2 3 33 33 H 1.09008 * 109.47009 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47210 * 240.00368 * 2 1 3 35 35 H 1.08996 * 109.47376 * 120.00091 * 2 1 3 36 36 H 1.08996 * 109.47625 * 60.00334 * 3 2 1 37 37 H 1.08997 * 109.46837 * 299.99831 * 3 2 1 38 38 H 1.08998 * 109.58726 * 353.42723 * 7 6 4 39 39 H 1.09007 * 109.58695 * 113.70456 * 7 6 4 40 40 H 1.09005 * 109.49650 * 65.31498 * 8 7 6 41 41 H 1.08995 * 109.49958 * 185.37999 * 8 7 6 42 42 H 1.09006 * 109.45385 * 181.38547 * 9 8 7 43 43 H 1.08998 * 109.46049 * 301.35040 * 9 8 7 44 44 H 1.09000 * 109.50086 * 178.68074 * 10 9 8 45 45 H 1.09011 * 109.49607 * 58.58245 * 10 9 8 46 46 H 0.97000 * 119.99773 * 359.97438 * 15 13 11 47 47 H 1.09001 * 113.61589 * 254.52555 * 18 16 15 48 48 H 1.08997 * 113.61439 * 25.34808 * 18 16 15 49 49 H 0.97001 * 119.99988 * 335.00046 * 21 19 18 50 50 H 0.97006 * 119.99715 * 180.02562 * 25 24 22 51 51 H 1.09000 * 113.61804 * 334.56137 * 30 16 15 52 52 H 1.08994 * 113.61573 * 105.46798 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 3.5064 3.8866 0.1342 8 6 3.9066 4.8005 -1.0283 9 6 5.4308 4.9339 -1.0655 10 6 6.0597 3.5576 -1.2943 11 6 5.6837 2.6297 -0.1349 12 1 6.1306 2.9988 0.7882 13 6 6.1838 1.2370 -0.4199 14 8 5.8284 0.6589 -1.4251 15 7 7.0259 0.6336 0.4423 16 6 7.5125 -0.7201 0.1648 17 1 7.4825 -0.9717 -0.8953 18 6 8.8583 -1.0405 0.8362 19 6 8.2887 -2.4382 1.1316 20 1 8.5546 -2.8185 2.1178 21 7 8.5330 -3.4094 0.0624 22 6 8.5668 -4.7482 0.3481 23 1 8.4129 -5.0881 1.3616 24 6 8.7989 -5.6685 -0.6649 25 7 8.9869 -5.2541 -1.8999 26 14 8.8443 -7.4947 -0.2752 27 1 7.4792 -8.0637 -0.4101 28 1 9.7618 -8.1799 -1.2207 29 1 9.3278 -7.6925 1.1149 30 6 6.8928 -1.7955 1.0728 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6765 1.9563 -0.8900 38 1 2.4314 3.7086 0.1057 39 1 3.7738 4.3571 1.0805 40 1 3.5561 4.3704 -1.9665 41 1 3.4581 5.7840 -0.8889 42 1 5.7169 5.6034 -1.8767 43 1 5.7829 5.3407 -0.1176 44 1 7.1440 3.6568 -1.3441 45 1 5.6888 3.1392 -2.2301 46 1 7.3104 1.0960 1.2461 47 1 9.7004 -1.0495 0.1442 48 1 9.0519 -0.4486 1.7307 49 1 8.6709 -3.1041 -0.8479 50 1 9.1487 -5.8973 -2.6079 51 1 6.5485 -1.4109 2.0329 52 1 6.1482 -2.4138 0.5717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021086617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:12 Heat of formation + Delta-G solvation = -69.141762 kcal Electronic energy + Delta-G solvation = -30734.102500 eV Core-core repulsion = 26733.172170 eV Total energy + Delta-G solvation = -4000.930330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01788 -40.47870 -39.07615 -38.30909 -35.70837 -35.36600 -34.21252 -33.88523 -32.46453 -31.53091 -29.04244 -26.92988 -26.52424 -26.03996 -25.05244 -24.02917 -23.10768 -21.61144 -21.55804 -20.43339 -19.72671 -19.38489 -18.50676 -17.61878 -17.37574 -16.92180 -16.72123 -16.61670 -15.90665 -15.61438 -15.56373 -15.33517 -15.08563 -15.03304 -14.74920 -14.62893 -14.34402 -14.03474 -13.83589 -13.69240 -13.53853 -13.29652 -13.23214 -12.85673 -12.80272 -12.68018 -12.62322 -12.48172 -12.19686 -12.16283 -11.99739 -11.81051 -11.74025 -11.72185 -11.70096 -11.57693 -11.34129 -10.92484 -10.62034 -10.49781 -9.87284 -9.62412 -9.06127 -7.98219 -5.28663 1.43336 1.47198 1.52251 1.55389 1.68589 2.25754 2.30529 2.52826 3.33127 3.51619 3.63730 3.76992 3.82586 3.83427 3.85523 3.94311 3.94698 4.04813 4.07509 4.12547 4.23007 4.30193 4.33571 4.44985 4.55321 4.62704 4.66123 4.71940 4.77196 4.78808 4.82732 4.83554 4.88989 4.98203 5.06370 5.13684 5.15626 5.19480 5.21508 5.22481 5.24201 5.34586 5.39532 5.45408 5.48572 5.52495 5.75604 6.23808 6.36715 6.73044 7.20886 7.27560 7.56427 8.03360 8.25975 9.25643 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002855 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.771859 B = 9803.358615 C =11203.938106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.485 3.515 5 O -0.550 6.550 6 N -0.606 5.606 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.111 4.111 10 C -0.121 4.121 11 C 0.132 3.868 12 H 0.119 0.881 13 C 0.523 3.477 14 O -0.585 6.585 15 N -0.704 5.704 16 C 0.145 3.855 17 H 0.057 0.943 18 C -0.135 4.135 19 C 0.152 3.848 20 H 0.079 0.921 21 N -0.723 5.723 22 C -0.245 4.245 23 H 0.082 0.918 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.980 3.020 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.262 1.262 30 C -0.162 4.162 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.047 0.953 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.411 0.589 47 H 0.062 0.938 48 H 0.127 0.873 49 H 0.370 0.630 50 H 0.251 0.749 51 H 0.093 0.907 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 30.500 9.664 35.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.275 3.725 5 O -0.427 6.427 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.148 4.148 10 C -0.160 4.160 11 C 0.026 3.974 12 H 0.137 0.863 13 C 0.312 3.688 14 O -0.464 6.464 15 N -0.356 5.356 16 C 0.039 3.961 17 H 0.075 0.925 18 C -0.174 4.174 19 C 0.041 3.959 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.808 3.192 27 H -0.218 1.218 28 H -0.220 1.220 29 H -0.187 1.187 30 C -0.204 4.204 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.248 0.752 47 H 0.081 0.919 48 H 0.145 0.855 49 H 0.202 0.798 50 H 0.060 0.940 51 H 0.112 0.888 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.315 29.359 9.056 33.894 hybrid contribution 0.318 -1.444 -0.713 1.642 sum -13.996 27.914 8.343 32.322 Atomic orbital electron populations 1.21726 0.92909 1.02217 1.03138 1.21249 0.97302 0.95523 1.00964 1.21711 0.88721 0.99321 1.06354 1.21703 0.92251 0.83142 0.75389 1.90854 1.69559 1.32837 1.49496 1.48212 1.05078 1.07553 1.73444 1.22169 0.97964 0.81511 1.00114 1.21971 0.96247 1.01059 0.98133 1.21514 0.95343 0.94028 1.03939 1.21840 1.01927 0.96201 0.96001 1.21221 0.82620 0.91808 1.01785 0.86319 1.20668 0.77290 0.87992 0.82879 1.90678 1.57769 1.66927 1.31025 1.45697 1.48389 1.16122 1.25402 1.21917 0.95094 0.81429 0.97652 0.92458 1.23720 0.95197 0.96880 1.01600 1.21264 0.93476 0.88796 0.92346 0.90331 1.42397 1.84597 1.02523 1.06556 1.19737 1.39579 0.83917 0.94463 0.90032 1.25706 1.03308 1.02948 0.95322 1.69861 1.57413 1.34463 1.00619 0.85045 0.76997 0.79473 0.77673 1.21775 1.21966 1.18666 1.24043 0.98974 0.97882 0.99507 0.90575 0.91518 0.93058 0.95031 0.93445 0.85427 0.87139 0.87389 0.88357 0.93082 0.87344 0.90321 0.89187 0.89879 0.93872 0.75220 0.91897 0.85536 0.79833 0.94010 0.88839 0.96232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.11 -2.59 5.22 30.59 0.16 -2.43 16 3 C -0.12 -2.11 4.06 29.85 0.12 -1.98 16 4 C 0.49 12.94 7.39 87.66 0.65 13.59 16 5 O -0.55 -21.73 11.75 20.54 0.24 -21.49 16 6 N -0.61 -11.58 2.97 -799.19 -2.38 -13.96 16 7 C 0.10 0.81 6.35 86.36 0.55 1.35 16 8 C -0.14 -0.98 6.08 30.67 0.19 -0.79 16 9 C -0.11 -0.99 5.88 30.62 0.18 -0.81 16 10 C -0.12 -2.17 5.31 30.67 0.16 -2.01 16 11 C 0.13 2.78 3.31 44.23 0.15 2.93 16 12 H 0.12 1.62 7.93 -2.38 -0.02 1.60 16 13 C 0.52 17.63 4.37 87.66 0.38 18.01 16 14 O -0.58 -27.16 14.21 20.54 0.29 -26.87 16 15 N -0.70 -21.58 5.35 -440.04 -2.36 -23.94 16 16 C 0.14 5.68 4.12 45.52 0.19 5.87 16 17 H 0.06 2.87 7.46 -2.39 -0.02 2.85 16 18 C -0.13 -4.56 7.58 31.12 0.24 -4.32 16 19 C 0.15 6.54 4.56 45.52 0.21 6.75 16 20 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 21 N -0.72 -40.27 5.31 -320.44 -1.70 -41.97 16 22 C -0.25 -14.62 9.97 84.03 0.84 -13.78 16 23 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 24 C -0.08 -4.97 5.50 84.86 0.47 -4.51 16 25 N -0.97 -64.08 13.06 21.65 0.28 -63.80 16 26 Si 0.98 48.84 29.55 68.60 2.03 50.87 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 30 C -0.16 -6.80 7.68 31.12 0.24 -6.56 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.13 1.21 7.69 -2.39 -0.02 1.20 16 37 H 0.11 1.47 7.94 -2.39 -0.02 1.45 16 38 H 0.11 0.44 5.93 -2.39 -0.01 0.42 16 39 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.04 1.09 7.93 -2.38 -0.02 1.07 16 46 H 0.41 8.74 8.57 -92.71 -0.79 7.95 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.13 3.05 8.12 -2.39 -0.02 3.03 16 49 H 0.37 22.51 7.90 -92.71 -0.73 21.78 16 50 H 0.25 15.95 8.31 -92.70 -0.77 15.18 16 51 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -92.62 408.43 1.22 -91.40 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.62 Total: 39.93 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.42 Total: 9.82 kcal Atomic # 7 Polarization: -137.51 SS G_CDS: -6.15 Total: -143.66 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: 0.53 Total: -48.36 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -92.62 1.22 -91.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021086617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.261 kcal (2) G-P(sol) polarization free energy of solvation -92.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds