Wall clock time and date at job start Tue Mar 31 2020 19:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00437 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99973 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63095 * 359.97438 * 6 4 3 8 8 C 1.53190 * 108.78037 * 233.61486 * 7 6 4 9 9 C 1.53043 * 109.30938 * 305.36459 * 8 7 6 10 10 C 1.53048 * 109.53680 * 61.36414 * 9 8 7 11 11 H 1.09007 * 109.49224 * 58.61602 * 10 9 8 12 12 C 1.50697 * 109.49458 * 178.67769 * 10 9 8 13 13 O 1.21286 * 119.99316 * 120.00663 * 12 10 9 14 14 N 1.34775 * 120.00646 * 299.99809 * 12 10 9 15 15 C 1.46496 * 119.99894 * 179.97438 * 14 12 10 16 16 H 1.09000 * 112.85205 * 313.72691 * 15 14 12 17 17 C 1.53778 * 113.61429 * 84.92890 * 15 14 12 18 18 C 1.53788 * 87.08117 * 89.11385 * 17 15 14 19 19 H 1.08993 * 113.61175 * 140.06660 * 18 17 15 20 20 N 1.46503 * 113.61155 * 270.88254 * 18 17 15 21 21 C 1.36933 * 119.99856 * 202.41822 * 20 18 17 22 22 H 1.07995 * 120.00124 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99775 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00249 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99750 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47188 * 89.99880 * 25 23 21 27 27 H 1.48491 * 109.47310 * 330.00242 * 25 23 21 28 28 H 1.48495 * 109.47351 * 209.99849 * 25 23 21 29 29 C 1.53779 * 87.08011 * 25.43372 * 18 17 15 30 30 C 1.46924 * 120.63235 * 180.02562 * 6 4 3 31 31 H 1.09002 * 109.47473 * 59.99861 * 1 2 3 32 32 H 1.09004 * 109.46988 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47335 * 300.00060 * 1 2 3 34 34 H 1.09000 * 109.47335 * 239.99940 * 2 1 3 35 35 H 1.08997 * 109.47186 * 119.99749 * 2 1 3 36 36 H 1.09007 * 109.46737 * 60.00005 * 3 2 1 37 37 H 1.09000 * 109.47551 * 300.00256 * 3 2 1 38 38 H 1.09003 * 109.58408 * 113.82218 * 7 6 4 39 39 H 1.08998 * 109.70343 * 353.47526 * 7 6 4 40 40 H 1.08997 * 109.49622 * 185.41675 * 8 7 6 41 41 H 1.09004 * 109.52364 * 65.33310 * 8 7 6 42 42 H 1.08997 * 109.46073 * 301.34604 * 9 8 7 43 43 H 1.09001 * 109.45655 * 181.38122 * 9 8 7 44 44 H 0.96998 * 119.99638 * 0.02562 * 14 12 10 45 45 H 1.09000 * 113.61564 * 334.56564 * 17 15 14 46 46 H 1.09003 * 113.61537 * 203.65868 * 17 15 14 47 47 H 0.97001 * 119.99598 * 22.42333 * 20 18 17 48 48 H 0.96997 * 119.99649 * 0.02562 * 24 23 21 49 49 H 1.08995 * 113.61637 * 89.12166 * 29 18 17 50 50 H 1.09007 * 113.61265 * 220.01846 * 29 18 17 51 51 H 1.09001 * 109.58057 * 6.60177 * 30 6 4 52 52 H 1.08993 * 109.58520 * 246.17618 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3922 0.0006 6 7 4.2209 2.6097 0.0013 7 6 3.5003 3.8902 0.0008 8 6 4.0091 4.7420 -1.1663 9 6 5.5305 4.8770 -1.0688 10 6 6.1744 3.4919 -1.1648 11 1 5.8914 3.0238 -2.1078 12 6 7.6738 3.6289 -1.1013 13 8 8.2951 3.0853 -0.2127 14 7 8.3243 4.3551 -2.0318 15 6 9.7818 4.4886 -1.9695 16 1 10.1429 4.7246 -0.9685 17 6 10.5359 3.3273 -2.6386 18 6 10.4642 4.1367 -3.9443 19 1 11.3765 4.0882 -4.5386 20 7 9.2573 3.8737 -4.7321 21 6 9.2471 4.1337 -6.0765 22 1 10.1289 4.5321 -6.5561 23 6 8.1034 3.8850 -6.8228 24 7 7.0289 3.3990 -6.2383 25 14 8.0893 4.2403 -8.6566 26 1 8.5352 3.0334 -9.3981 27 1 9.0090 5.3688 -8.9493 28 1 6.7126 4.6011 -9.0804 29 6 10.3648 5.3953 -3.0664 30 6 5.6900 2.6259 0.0013 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.6818 4.4119 0.9404 39 1 2.4317 3.7104 -0.1167 40 1 3.5526 5.7307 -1.1213 41 1 3.7461 4.2624 -2.1092 42 1 5.7940 5.3346 -0.1153 43 1 5.8925 5.5031 -1.8843 44 1 7.8273 4.7899 -2.7422 45 1 9.9676 2.3977 -2.6693 46 1 11.5506 3.1921 -2.2639 47 1 8.4654 3.5156 -4.3012 48 1 7.0362 3.2149 -5.2860 49 1 11.3325 5.8255 -2.8087 50 1 9.6582 6.1353 -3.4424 51 1 6.0666 1.6099 -0.1173 52 1 6.0507 3.0442 0.9409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023122911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:47 Heat of formation + Delta-G solvation = -55.077068 kcal Electronic energy + Delta-G solvation = -30508.663609 eV Core-core repulsion = 26508.343170 eV Total energy + Delta-G solvation = -4000.320439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67329 -39.79488 -38.27899 -37.04804 -34.61865 -34.00119 -33.42155 -32.36780 -31.40423 -29.61449 -28.34510 -25.39642 -25.29010 -24.86945 -23.85449 -22.58981 -22.16013 -21.26018 -19.86480 -19.05241 -18.89659 -17.63561 -17.35081 -16.67603 -16.13069 -15.83167 -15.78584 -15.32124 -14.95380 -14.58049 -14.49841 -14.37629 -14.03688 -13.78202 -13.73364 -13.37239 -13.29243 -13.18919 -12.93641 -12.77615 -12.21082 -12.12191 -11.96576 -11.84795 -11.64381 -11.47596 -11.46042 -11.16993 -11.10812 -10.94791 -10.84742 -10.74924 -10.57730 -10.41854 -10.08283 -9.86561 -9.83842 -9.50503 -9.26394 -9.01714 -8.76597 -8.61185 -7.15779 -6.20867 -3.21793 2.54125 2.77611 2.83587 3.45779 3.47087 3.50773 3.64299 4.29302 4.46902 4.58192 4.64039 4.67186 4.70373 4.78490 4.83420 4.91955 5.02711 5.12212 5.13286 5.22464 5.24878 5.29331 5.36763 5.37380 5.40117 5.43213 5.49468 5.56173 5.65188 5.73512 5.76754 5.79745 5.82394 5.86704 5.94392 6.02176 6.06899 6.10580 6.12365 6.18710 6.30041 6.36165 6.50936 6.56800 6.72594 6.97601 7.27313 7.74834 7.78326 8.09387 8.45584 8.64047 9.10555 9.97012 10.12306 11.26226 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.003148 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.356452 B = 8891.241117 C =10488.276071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.513 3.487 5 O -0.537 6.537 6 N -0.614 5.614 7 C 0.105 3.895 8 C -0.135 4.135 9 C -0.110 4.110 10 C -0.124 4.124 11 H 0.106 0.894 12 C 0.524 3.476 13 O -0.546 6.546 14 N -0.701 5.701 15 C 0.128 3.872 16 H 0.080 0.920 17 C -0.168 4.168 18 C 0.170 3.830 19 H 0.064 0.936 20 N -0.717 5.717 21 C -0.334 4.334 22 H 0.067 0.933 23 C -0.043 4.043 24 N -0.940 5.940 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.288 1.288 29 C -0.178 4.178 30 C 0.135 3.865 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.407 0.593 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.368 0.632 48 H 0.252 0.748 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.099 0.901 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 4.048 14.251 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.348 5.348 7 C -0.018 4.018 8 C -0.173 4.173 9 C -0.148 4.148 10 C -0.146 4.146 11 H 0.124 0.876 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.353 5.353 15 C 0.022 3.978 16 H 0.098 0.902 17 C -0.208 4.208 18 C 0.058 3.942 19 H 0.082 0.918 20 N -0.358 5.358 21 C -0.465 4.465 22 H 0.085 0.915 23 C -0.241 4.241 24 N -0.585 5.585 25 Si 0.914 3.086 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.214 1.214 29 C -0.219 4.219 30 C 0.012 3.988 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.243 0.757 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.202 0.798 48 H 0.063 0.937 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.011 3.120 13.345 16.972 hybrid contribution 0.617 0.352 1.073 1.287 sum -9.394 3.472 14.418 17.555 Atomic orbital electron populations 1.21791 0.95487 1.01970 1.01707 1.21300 0.95218 0.94711 1.03688 1.21750 0.91755 1.00215 1.04158 1.20796 0.90390 0.83074 0.75592 1.90715 1.70401 1.30915 1.49358 1.48155 1.06891 1.06044 1.73731 1.21799 0.96776 0.84155 0.99057 1.21933 0.95704 1.00523 0.99187 1.21501 0.95278 0.94936 1.03062 1.21671 0.92241 0.98509 1.02228 0.87589 1.20315 0.89219 0.78092 0.81404 1.90679 1.69143 1.46894 1.35642 1.45832 1.07430 1.52215 1.29845 1.21724 0.79667 0.98004 0.98356 0.90176 1.23851 1.00163 0.98329 0.98487 1.21107 0.91360 0.91778 0.89996 0.91774 1.42268 1.10552 1.76884 1.06128 1.20129 1.00669 1.40809 0.84878 0.91470 1.25797 0.92313 0.99762 1.06205 1.70894 1.29184 1.46884 1.11575 0.83180 0.75433 0.75733 0.74247 1.22274 1.22114 1.21374 1.24125 1.00531 0.99629 0.97649 1.21276 0.78393 1.01986 0.97121 0.92610 0.92409 0.92793 0.91074 0.91297 0.89051 0.88768 0.91161 0.89464 0.90040 0.90612 0.91232 0.90629 0.75658 0.91468 0.89653 0.79780 0.93671 0.89786 0.90966 0.88306 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 3 C -0.14 -1.22 4.05 -27.88 -0.11 -1.33 16 4 C 0.51 6.69 7.70 -10.98 -0.08 6.60 16 5 O -0.54 -9.36 15.39 5.56 0.09 -9.28 16 6 N -0.61 -7.23 2.97 -172.82 -0.51 -7.74 16 7 C 0.11 0.84 6.34 -3.71 -0.02 0.82 16 8 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16 9 C -0.11 -1.18 5.08 -26.68 -0.14 -1.32 16 10 C -0.12 -1.72 2.67 -91.69 -0.25 -1.97 16 11 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.52 8.67 7.16 -10.99 -0.08 8.59 16 13 O -0.55 -10.56 15.86 5.55 0.09 -10.48 16 14 N -0.70 -11.46 4.21 -53.02 -0.22 -11.68 16 15 C 0.13 2.09 4.00 -67.12 -0.27 1.82 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 17 C -0.17 -2.97 7.62 -25.92 -0.20 -3.16 16 18 C 0.17 3.33 4.56 -67.11 -0.31 3.02 16 19 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 20 N -0.72 -17.14 5.02 -52.64 -0.26 -17.40 16 21 C -0.33 -9.01 9.97 -15.06 -0.15 -9.16 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 24 N -0.94 -27.68 13.70 55.49 0.76 -26.92 16 25 Si 1.08 25.15 29.92 -169.99 -5.09 20.07 16 26 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C -0.18 -2.90 7.57 -25.92 -0.20 -3.09 16 30 C 0.13 1.89 5.06 -3.75 -0.02 1.88 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.09 0.60 7.94 -51.93 -0.41 0.18 16 37 H 0.09 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.50 5.95 -51.93 -0.31 0.20 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.84 7.53 -51.93 -0.39 0.45 16 44 H 0.41 6.77 7.23 -40.82 -0.30 6.47 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.37 8.97 5.20 -40.82 -0.21 8.76 16 48 H 0.25 7.30 6.77 -40.82 -0.28 7.02 16 49 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 51 H 0.10 1.68 7.00 -51.93 -0.36 1.32 16 52 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -33.73 408.03 -9.88 -43.61 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -9.03 Total: 15.50 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.85 Total: -1.83 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.24 Total: -63.74 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.07 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.73 -9.88 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023122911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.469 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds