Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00437 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99973 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63095 * 359.97438 * 6 4 3 8 8 C 1.53190 * 108.78037 * 233.61486 * 7 6 4 9 9 C 1.53043 * 109.30938 * 305.36459 * 8 7 6 10 10 C 1.53048 * 109.53680 * 61.36414 * 9 8 7 11 11 H 1.09007 * 109.49224 * 58.61602 * 10 9 8 12 12 C 1.50697 * 109.49458 * 178.67769 * 10 9 8 13 13 O 1.21286 * 119.99316 * 120.00663 * 12 10 9 14 14 N 1.34775 * 120.00646 * 299.99809 * 12 10 9 15 15 C 1.46496 * 119.99894 * 179.97438 * 14 12 10 16 16 H 1.09000 * 112.85205 * 313.72691 * 15 14 12 17 17 C 1.53778 * 113.61429 * 84.92890 * 15 14 12 18 18 C 1.53788 * 87.08117 * 89.11385 * 17 15 14 19 19 H 1.08993 * 113.61175 * 140.06660 * 18 17 15 20 20 N 1.46503 * 113.61155 * 270.88254 * 18 17 15 21 21 C 1.36933 * 119.99856 * 202.41822 * 20 18 17 22 22 H 1.07995 * 120.00124 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99775 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00249 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99750 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47188 * 89.99880 * 25 23 21 27 27 H 1.48491 * 109.47310 * 330.00242 * 25 23 21 28 28 H 1.48495 * 109.47351 * 209.99849 * 25 23 21 29 29 C 1.53779 * 87.08011 * 25.43372 * 18 17 15 30 30 C 1.46924 * 120.63235 * 180.02562 * 6 4 3 31 31 H 1.09002 * 109.47473 * 59.99861 * 1 2 3 32 32 H 1.09004 * 109.46988 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47335 * 300.00060 * 1 2 3 34 34 H 1.09000 * 109.47335 * 239.99940 * 2 1 3 35 35 H 1.08997 * 109.47186 * 119.99749 * 2 1 3 36 36 H 1.09007 * 109.46737 * 60.00005 * 3 2 1 37 37 H 1.09000 * 109.47551 * 300.00256 * 3 2 1 38 38 H 1.09003 * 109.58408 * 113.82218 * 7 6 4 39 39 H 1.08998 * 109.70343 * 353.47526 * 7 6 4 40 40 H 1.08997 * 109.49622 * 185.41675 * 8 7 6 41 41 H 1.09004 * 109.52364 * 65.33310 * 8 7 6 42 42 H 1.08997 * 109.46073 * 301.34604 * 9 8 7 43 43 H 1.09001 * 109.45655 * 181.38122 * 9 8 7 44 44 H 0.96998 * 119.99638 * 0.02562 * 14 12 10 45 45 H 1.09000 * 113.61564 * 334.56564 * 17 15 14 46 46 H 1.09003 * 113.61537 * 203.65868 * 17 15 14 47 47 H 0.97001 * 119.99598 * 22.42333 * 20 18 17 48 48 H 0.96997 * 119.99649 * 0.02562 * 24 23 21 49 49 H 1.08995 * 113.61637 * 89.12166 * 29 18 17 50 50 H 1.09007 * 113.61265 * 220.01846 * 29 18 17 51 51 H 1.09001 * 109.58057 * 6.60177 * 30 6 4 52 52 H 1.08993 * 109.58520 * 246.17618 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3922 0.0006 6 7 4.2209 2.6097 0.0013 7 6 3.5003 3.8902 0.0008 8 6 4.0091 4.7420 -1.1663 9 6 5.5305 4.8770 -1.0688 10 6 6.1744 3.4919 -1.1648 11 1 5.8914 3.0238 -2.1078 12 6 7.6738 3.6289 -1.1013 13 8 8.2951 3.0853 -0.2127 14 7 8.3243 4.3551 -2.0318 15 6 9.7818 4.4886 -1.9695 16 1 10.1429 4.7246 -0.9685 17 6 10.5359 3.3273 -2.6386 18 6 10.4642 4.1367 -3.9443 19 1 11.3765 4.0882 -4.5386 20 7 9.2573 3.8737 -4.7321 21 6 9.2471 4.1337 -6.0765 22 1 10.1289 4.5321 -6.5561 23 6 8.1034 3.8850 -6.8228 24 7 7.0289 3.3990 -6.2383 25 14 8.0893 4.2403 -8.6566 26 1 8.5352 3.0334 -9.3981 27 1 9.0090 5.3688 -8.9493 28 1 6.7126 4.6011 -9.0804 29 6 10.3648 5.3953 -3.0664 30 6 5.6900 2.6259 0.0013 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.6818 4.4119 0.9404 39 1 2.4317 3.7104 -0.1167 40 1 3.5526 5.7307 -1.1213 41 1 3.7461 4.2624 -2.1092 42 1 5.7940 5.3346 -0.1153 43 1 5.8925 5.5031 -1.8843 44 1 7.8273 4.7899 -2.7422 45 1 9.9676 2.3977 -2.6693 46 1 11.5506 3.1921 -2.2639 47 1 8.4654 3.5156 -4.3012 48 1 7.0362 3.2149 -5.2860 49 1 11.3325 5.8255 -2.8087 50 1 9.6582 6.1353 -3.4424 51 1 6.0666 1.6099 -0.1173 52 1 6.0507 3.0442 0.9409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023122911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = -76.860232 kcal Electronic energy + Delta-G solvation = -30509.608198 eV Core-core repulsion = 26508.343170 eV Total energy + Delta-G solvation = -4001.265028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83825 -41.02530 -39.64477 -38.16492 -35.88148 -35.39875 -34.67241 -33.63413 -32.35943 -31.49946 -29.12017 -26.73998 -26.27279 -26.25873 -25.55047 -23.99941 -22.97026 -22.23858 -21.12639 -20.39687 -19.96953 -19.51818 -18.48952 -17.85210 -17.25142 -17.02733 -16.87467 -16.72721 -16.33065 -15.98601 -15.61929 -15.50535 -15.38282 -15.17665 -14.98001 -14.74634 -14.34702 -14.03646 -13.86444 -13.75804 -13.62183 -13.29276 -13.13986 -12.90376 -12.70569 -12.66858 -12.60828 -12.37370 -12.25632 -12.06004 -11.98399 -11.87810 -11.85894 -11.73654 -11.64661 -11.48050 -11.11304 -10.96914 -10.93396 -10.76774 -10.05019 -9.75382 -9.13886 -8.39313 -5.34440 1.46784 1.54307 1.59418 1.68668 1.79715 1.82994 2.23778 2.69629 3.37551 3.38607 3.47766 3.57037 3.66769 3.68805 3.74063 3.82905 3.94660 4.00010 4.07636 4.09633 4.14763 4.14948 4.25947 4.41314 4.53033 4.60622 4.65548 4.68370 4.70631 4.73320 4.77569 4.79831 4.81145 4.87150 4.88347 4.94516 5.02254 5.04299 5.12177 5.22867 5.24938 5.26332 5.30434 5.39676 5.47393 5.52910 5.67402 6.34893 6.41030 6.48279 7.07002 7.07795 7.12390 7.97544 8.09706 9.10855 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.003148 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.356452 B = 8891.241117 C =10488.276071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.501 3.499 5 O -0.596 6.596 6 N -0.612 5.612 7 C 0.100 3.900 8 C -0.131 4.131 9 C -0.106 4.106 10 C -0.115 4.115 11 H 0.083 0.917 12 C 0.522 3.478 13 O -0.576 6.576 14 N -0.699 5.699 15 C 0.128 3.872 16 H 0.094 0.906 17 C -0.162 4.162 18 C 0.149 3.851 19 H 0.062 0.938 20 N -0.731 5.731 21 C -0.332 4.332 22 H 0.068 0.932 23 C -0.100 4.100 24 N -0.969 5.969 25 Si 1.129 2.871 26 H -0.292 1.292 27 H -0.272 1.272 28 H -0.292 1.292 29 C -0.152 4.152 30 C 0.142 3.858 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.405 0.595 45 H 0.034 0.966 46 H 0.114 0.886 47 H 0.361 0.639 48 H 0.241 0.759 49 H 0.120 0.880 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 6.806 14.875 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.292 3.708 5 O -0.476 6.476 6 N -0.344 5.344 7 C -0.021 4.021 8 C -0.169 4.169 9 C -0.143 4.143 10 C -0.138 4.138 11 H 0.101 0.899 12 C 0.309 3.691 13 O -0.456 6.456 14 N -0.350 5.350 15 C 0.023 3.977 16 H 0.112 0.888 17 C -0.201 4.201 18 C 0.039 3.961 19 H 0.080 0.920 20 N -0.372 5.372 21 C -0.463 4.463 22 H 0.086 0.914 23 C -0.292 4.292 24 N -0.617 5.617 25 Si 0.955 3.045 26 H -0.219 1.219 27 H -0.197 1.197 28 H -0.218 1.218 29 C -0.193 4.193 30 C 0.018 3.982 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.242 0.758 45 H 0.053 0.947 46 H 0.133 0.867 47 H 0.195 0.805 48 H 0.052 0.948 49 H 0.138 0.862 50 H 0.082 0.918 51 H 0.076 0.924 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.979 5.939 13.992 18.751 hybrid contribution 1.061 -0.539 0.914 1.500 sum -9.918 5.400 14.906 18.701 Atomic orbital electron populations 1.21743 0.93109 1.02417 1.02979 1.21286 0.97158 0.94990 1.01666 1.21817 0.88005 1.00246 1.06747 1.21728 0.92281 0.82456 0.74383 1.90689 1.71823 1.33062 1.52060 1.48306 1.05863 1.07518 1.72759 1.22172 0.98048 0.82093 0.99795 1.21948 0.93905 1.02285 0.98747 1.21534 0.96840 0.92324 1.03642 1.21598 0.90668 1.00593 1.00910 0.89852 1.20769 0.90288 0.77280 0.80803 1.90654 1.70001 1.48062 1.36932 1.45865 1.07659 1.51951 1.29518 1.21799 0.79533 0.97231 0.99110 0.88765 1.23852 1.01597 0.96993 0.97703 1.21417 0.89650 0.94503 0.90537 0.91958 1.42394 1.11744 1.77355 1.05705 1.20431 1.00381 1.39190 0.86304 0.91356 1.27106 0.92228 1.00060 1.09788 1.70996 1.30329 1.49270 1.11111 0.82580 0.75564 0.76317 0.70056 1.21933 1.19693 1.21845 1.23935 1.02067 0.97663 0.95643 1.20992 0.80406 0.99591 0.97231 0.91706 0.92513 0.91020 0.93789 0.92883 0.85548 0.86536 0.88929 0.86220 0.86767 0.92202 0.89814 0.91008 0.75818 0.94699 0.86738 0.80527 0.94843 0.86184 0.91828 0.92411 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.11 -2.11 5.22 30.59 0.16 -1.95 16 3 C -0.13 -2.03 4.05 29.85 0.12 -1.91 16 4 C 0.50 13.27 7.70 87.66 0.67 13.94 16 5 O -0.60 -22.36 15.39 -3.03 -0.05 -22.40 16 6 N -0.61 -14.20 2.97 -819.06 -2.44 -16.63 16 7 C 0.10 1.30 6.34 86.36 0.55 1.84 16 8 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 9 C -0.11 -2.16 5.08 30.62 0.16 -2.00 16 10 C -0.12 -3.34 2.67 -11.49 -0.03 -3.37 16 11 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 12 C 0.52 17.87 7.16 87.66 0.63 18.50 16 13 O -0.58 -23.07 15.86 -3.05 -0.05 -23.12 16 14 N -0.70 -23.17 4.21 -440.04 -1.85 -25.02 16 15 C 0.13 4.08 4.00 45.52 0.18 4.26 16 16 H 0.09 2.80 8.05 -2.39 -0.02 2.78 16 17 C -0.16 -5.64 7.62 31.12 0.24 -5.40 16 18 C 0.15 5.75 4.56 45.52 0.21 5.96 16 19 H 0.06 2.41 8.11 -2.39 -0.02 2.39 16 20 N -0.73 -35.44 5.02 -320.45 -1.61 -37.05 16 21 C -0.33 -17.98 9.97 84.03 0.84 -17.14 16 22 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 23 C -0.10 -5.62 5.50 84.86 0.47 -5.15 16 24 N -0.97 -58.40 13.70 21.65 0.30 -58.11 16 25 Si 1.13 50.64 29.92 68.60 2.05 52.70 16 26 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 29 C -0.15 -4.65 7.57 31.12 0.24 -4.42 16 30 C 0.14 4.18 5.06 86.34 0.44 4.62 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.13 1.15 7.94 -2.38 -0.02 1.13 16 37 H 0.12 1.37 7.70 -2.39 -0.02 1.35 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 0.83 5.95 -2.39 -0.01 0.82 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.54 7.53 -2.39 -0.02 1.52 16 44 H 0.41 13.79 7.23 -92.71 -0.67 13.12 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.36 18.28 5.20 -92.71 -0.48 17.80 16 48 H 0.24 14.53 6.77 -92.71 -0.63 13.90 16 49 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 50 H 0.06 2.09 8.13 -2.38 -0.02 2.08 16 51 H 0.06 2.17 7.00 -2.39 -0.02 2.16 16 52 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 Total: -1.00 -77.93 408.03 2.02 -75.91 By element: Atomic # 1 Polarization: 48.86 SS G_CDS: -0.10 Total: 48.77 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.76 Total: 4.96 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -5.60 Total: -136.81 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.09 Total: -45.52 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.70 kcal Total: -77.93 2.02 -75.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023122911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.949 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds