Wall clock time and date at job start Tue Mar 31 2020 19:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47058 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00250 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99793 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62918 * 0.02562 * 6 4 3 8 8 C 1.53185 * 108.77524 * 126.11612 * 7 6 4 9 9 C 1.53045 * 109.31342 * 54.63463 * 8 7 6 10 10 C 1.53038 * 109.53516 * 298.63219 * 9 8 7 11 11 H 1.09001 * 109.50363 * 301.41275 * 10 9 8 12 12 C 1.50697 * 109.49570 * 181.31421 * 10 9 8 13 13 O 1.21287 * 120.00365 * 240.00345 * 12 10 9 14 14 N 1.34780 * 120.00066 * 60.00235 * 12 10 9 15 15 C 1.46497 * 119.99949 * 179.97438 * 14 12 10 16 16 H 1.08994 * 112.85335 * 334.66622 * 15 14 12 17 17 C 1.53788 * 113.61189 * 105.86765 * 15 14 12 18 18 C 1.54052 * 86.98434 * 89.15853 * 17 15 14 19 19 H 1.09001 * 113.61552 * 139.97810 * 18 17 15 20 20 N 1.46502 * 113.69043 * 270.87108 * 18 17 15 21 21 C 1.36935 * 120.00430 * 252.53095 * 20 18 17 22 22 H 1.08004 * 119.99543 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00438 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99858 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00131 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46907 * 60.00456 * 25 23 21 27 27 H 1.48508 * 109.47073 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47354 * 300.00218 * 25 23 21 29 29 C 1.53782 * 87.08060 * 25.43157 * 18 17 15 30 30 C 1.46924 * 120.63033 * 179.72182 * 6 4 3 31 31 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47239 * 299.99571 * 1 2 3 33 33 H 1.08997 * 109.47049 * 59.99998 * 1 2 3 34 34 H 1.09003 * 109.47412 * 240.00010 * 2 1 3 35 35 H 1.09002 * 109.47221 * 120.00418 * 2 1 3 36 36 H 1.08997 * 109.46651 * 60.00069 * 3 2 1 37 37 H 1.08997 * 109.47098 * 299.99972 * 3 2 1 38 38 H 1.09001 * 109.58178 * 245.90575 * 7 6 4 39 39 H 1.08998 * 109.58625 * 6.18591 * 7 6 4 40 40 H 1.08998 * 109.50031 * 174.58725 * 8 7 6 41 41 H 1.09001 * 109.49616 * 294.65180 * 8 7 6 42 42 H 1.08994 * 109.45779 * 58.65535 * 9 8 7 43 43 H 1.08999 * 109.45805 * 178.61914 * 9 8 7 44 44 H 0.96997 * 119.99705 * 0.02562 * 14 12 10 45 45 H 1.08994 * 113.61422 * 203.66403 * 17 15 14 46 46 H 1.08996 * 113.61283 * 334.56778 * 17 15 14 47 47 H 0.97000 * 119.99465 * 72.53368 * 20 18 17 48 48 H 0.96996 * 120.00003 * 179.97438 * 24 23 21 49 49 H 1.08995 * 113.61681 * 220.02255 * 29 18 17 50 50 H 1.09000 * 113.61050 * 89.11651 * 29 18 17 51 51 H 1.09004 * 109.58777 * 353.67036 * 30 6 4 52 52 H 1.08994 * 109.58607 * 114.09373 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6098 0.0013 7 6 3.5003 3.8902 0.0019 8 6 4.0034 4.7385 1.1740 9 6 5.5252 4.8738 1.0844 10 6 6.1686 3.4885 1.1796 11 1 5.8807 3.0173 2.1194 12 6 7.6683 3.6255 1.1237 13 8 8.2941 3.0847 0.2366 14 7 8.3142 4.3491 2.0595 15 6 9.7722 4.4819 2.0055 16 1 10.2537 3.6533 1.4863 17 6 10.2476 5.8655 1.5316 18 6 10.2099 6.2949 3.0106 19 1 11.0457 6.9309 3.3021 20 7 8.9135 6.8289 3.4356 21 6 8.7686 8.1704 3.6686 22 1 9.6100 8.8350 3.5385 23 6 7.5402 8.6764 4.0708 24 7 6.5147 7.8665 4.2288 25 14 7.3424 10.5066 4.3878 26 1 7.6515 11.2602 3.1461 27 1 5.9449 10.7888 4.8037 28 1 8.2734 10.9257 5.4660 29 6 10.4114 4.8121 3.3647 30 6 5.6900 2.6259 0.0080 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6865 4.4146 -0.9353 39 1 2.4314 3.7078 0.1124 40 1 3.5471 5.7273 1.1297 41 1 3.7353 4.2559 2.1138 42 1 5.7935 5.3342 0.1336 43 1 5.8832 5.4974 1.9035 44 1 7.8138 4.7813 2.7692 45 1 11.2501 5.8599 1.1040 46 1 9.5223 6.3856 0.9059 47 1 8.1579 6.2319 3.5521 48 1 5.6564 8.2200 4.5102 49 1 9.8185 4.4823 4.2177 50 1 11.4588 4.5190 3.4373 51 1 6.0662 1.6096 0.1252 52 1 6.0551 3.0471 -0.9286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023122912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:50 Heat of formation + Delta-G solvation = -54.215331 kcal Electronic energy + Delta-G solvation = -30442.592944 eV Core-core repulsion = 26442.309873 eV Total energy + Delta-G solvation = -4000.283071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60563 -39.72793 -38.22099 -36.98459 -34.63791 -33.71480 -33.28488 -32.24219 -31.30499 -29.93612 -28.34272 -25.26041 -25.14717 -24.97527 -24.04810 -22.42994 -22.10155 -21.15468 -19.83759 -18.97431 -18.92007 -17.53372 -17.26177 -16.60497 -16.12975 -15.79484 -15.59829 -14.99464 -14.86005 -14.56280 -14.49278 -14.27491 -13.93789 -13.86715 -13.52452 -13.17236 -13.10790 -13.04679 -12.96132 -12.67958 -12.21552 -12.07567 -11.97229 -11.92942 -11.58271 -11.48909 -11.43265 -11.05558 -10.97655 -10.94460 -10.88944 -10.86092 -10.58796 -10.30877 -10.19632 -9.91634 -9.85355 -9.62763 -9.43769 -8.98830 -8.71316 -8.55483 -7.12907 -5.93422 -3.21561 2.53989 2.82286 2.90038 3.35306 3.40063 3.40868 3.54967 4.32740 4.46420 4.57367 4.67411 4.74242 4.84864 4.88375 4.93324 5.00101 5.08751 5.16276 5.23456 5.23907 5.29276 5.34696 5.38478 5.38949 5.47668 5.49973 5.59067 5.71860 5.77529 5.81285 5.85317 5.88071 5.90984 5.92234 6.04260 6.07814 6.11808 6.23709 6.25446 6.29411 6.39129 6.42076 6.55132 6.67910 6.80446 7.10348 7.30840 7.59550 7.88418 8.09220 8.26284 8.54414 9.36897 9.90953 10.24895 11.29197 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.002960 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.638018 B = 9457.471228 C =11236.507306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.513 3.487 5 O -0.543 6.543 6 N -0.612 5.612 7 C 0.103 3.897 8 C -0.130 4.130 9 C -0.115 4.115 10 C -0.120 4.120 11 H 0.098 0.902 12 C 0.525 3.475 13 O -0.552 6.552 14 N -0.697 5.697 15 C 0.123 3.877 16 H 0.090 0.910 17 C -0.186 4.186 18 C 0.164 3.836 19 H 0.066 0.934 20 N -0.703 5.703 21 C -0.242 4.242 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.168 4.168 30 C 0.134 3.866 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.408 0.592 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.378 0.622 48 H 0.257 0.743 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 -9.904 -6.902 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.301 3.699 5 O -0.420 6.420 6 N -0.346 5.346 7 C -0.020 4.020 8 C -0.168 4.168 9 C -0.152 4.152 10 C -0.143 4.143 11 H 0.117 0.883 12 C 0.311 3.689 13 O -0.430 6.430 14 N -0.350 5.350 15 C 0.018 3.982 16 H 0.108 0.892 17 C -0.228 4.228 18 C 0.052 3.948 19 H 0.084 0.916 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.208 4.208 30 C 0.011 3.989 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.246 0.754 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.213 0.787 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.115 0.885 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.990 -10.641 -7.473 15.262 hybrid contribution -0.619 1.288 0.599 1.550 sum -8.609 -9.353 -6.875 14.451 Atomic orbital electron populations 1.21793 0.95509 1.01919 1.01777 1.21293 0.95192 0.94760 1.03564 1.21752 0.91864 1.00089 1.04257 1.20777 0.90353 0.83086 0.75642 1.90696 1.70458 1.30964 1.49887 1.48187 1.06987 1.06113 1.73298 1.21869 0.96539 0.84028 0.99539 1.21876 0.96155 1.00533 0.98270 1.21553 0.94826 0.94468 1.04393 1.21643 0.92293 0.98932 1.01382 0.88342 1.20329 0.89300 0.77883 0.81438 1.90665 1.68833 1.48109 1.35417 1.45866 1.07525 1.51613 1.30022 1.21768 0.80179 0.98304 0.97994 0.89226 1.24311 1.00554 0.96571 1.01352 1.21262 0.90224 0.91670 0.91668 0.91591 1.42190 1.06395 1.06131 1.79635 1.19240 0.95693 0.84007 1.38339 0.90944 1.24709 0.95881 0.97934 1.02064 1.69597 1.01259 1.33753 1.53538 0.86238 0.76740 0.84966 0.78042 1.21266 1.21665 1.21245 1.23860 1.00743 0.99698 0.96464 1.21308 0.78354 1.01730 0.97497 0.92453 0.92635 0.92725 0.91299 0.91233 0.88810 0.88976 0.91069 0.89622 0.89807 0.91122 0.91322 0.88858 0.75390 0.90508 0.91135 0.78655 0.93351 0.91123 0.89166 0.88507 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.11 -0.96 5.22 -26.73 -0.14 -1.10 16 3 C -0.14 -1.18 4.05 -27.88 -0.11 -1.29 16 4 C 0.51 6.44 7.70 -10.98 -0.08 6.36 16 5 O -0.54 -8.95 15.39 5.56 0.09 -8.86 16 6 N -0.61 -7.28 2.97 -172.80 -0.51 -7.80 16 7 C 0.10 0.94 6.34 -3.71 -0.02 0.92 16 8 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 9 C -0.11 -1.55 5.08 -26.69 -0.14 -1.68 16 10 C -0.12 -1.70 2.68 -91.67 -0.25 -1.94 16 11 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 12 C 0.52 8.85 7.16 -10.99 -0.08 8.77 16 13 O -0.55 -10.78 15.54 5.55 0.09 -10.70 16 14 N -0.70 -11.73 5.01 -53.01 -0.27 -12.00 16 15 C 0.12 2.03 4.30 -67.11 -0.29 1.75 16 16 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 17 C -0.19 -3.21 7.70 -25.77 -0.20 -3.41 16 18 C 0.16 3.06 4.57 -66.97 -0.31 2.76 16 19 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 20 N -0.70 -15.98 5.18 -52.50 -0.27 -16.25 16 21 C -0.24 -6.22 9.97 -15.06 -0.15 -6.37 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -25.14 13.06 55.49 0.72 -24.41 16 25 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 C -0.17 -2.63 7.58 -25.91 -0.20 -2.83 16 30 C 0.13 1.89 5.06 -3.73 -0.02 1.87 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.09 0.65 7.70 -51.93 -0.40 0.25 16 37 H 0.09 0.61 7.94 -51.93 -0.41 0.20 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.57 5.93 -51.93 -0.31 0.26 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.51 7.53 -51.93 -0.39 1.12 16 44 H 0.41 7.12 5.57 -40.82 -0.23 6.89 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.38 8.72 5.35 -40.82 -0.22 8.50 16 48 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.10 1.56 7.00 -51.93 -0.36 1.20 16 52 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -30.72 407.53 -9.91 -40.63 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -9.00 Total: 15.96 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.87 Total: 1.25 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.33 Total: -60.46 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.72 -9.91 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023122912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.585 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds