Wall clock time and date at job start Tue Mar 31 2020 19:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47058 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00250 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99793 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62918 * 0.02562 * 6 4 3 8 8 C 1.53185 * 108.77524 * 126.11612 * 7 6 4 9 9 C 1.53045 * 109.31342 * 54.63463 * 8 7 6 10 10 C 1.53038 * 109.53516 * 298.63219 * 9 8 7 11 11 H 1.09001 * 109.50363 * 301.41275 * 10 9 8 12 12 C 1.50697 * 109.49570 * 181.31421 * 10 9 8 13 13 O 1.21287 * 120.00365 * 240.00345 * 12 10 9 14 14 N 1.34780 * 120.00066 * 60.00235 * 12 10 9 15 15 C 1.46497 * 119.99949 * 179.97438 * 14 12 10 16 16 H 1.08994 * 112.85335 * 334.66622 * 15 14 12 17 17 C 1.53788 * 113.61189 * 105.86765 * 15 14 12 18 18 C 1.54052 * 86.98434 * 89.15853 * 17 15 14 19 19 H 1.09001 * 113.61552 * 139.97810 * 18 17 15 20 20 N 1.46502 * 113.69043 * 270.87108 * 18 17 15 21 21 C 1.36935 * 120.00430 * 252.53095 * 20 18 17 22 22 H 1.08004 * 119.99543 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00438 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99858 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00131 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46907 * 60.00456 * 25 23 21 27 27 H 1.48508 * 109.47073 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47354 * 300.00218 * 25 23 21 29 29 C 1.53782 * 87.08060 * 25.43157 * 18 17 15 30 30 C 1.46924 * 120.63033 * 179.72182 * 6 4 3 31 31 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47239 * 299.99571 * 1 2 3 33 33 H 1.08997 * 109.47049 * 59.99998 * 1 2 3 34 34 H 1.09003 * 109.47412 * 240.00010 * 2 1 3 35 35 H 1.09002 * 109.47221 * 120.00418 * 2 1 3 36 36 H 1.08997 * 109.46651 * 60.00069 * 3 2 1 37 37 H 1.08997 * 109.47098 * 299.99972 * 3 2 1 38 38 H 1.09001 * 109.58178 * 245.90575 * 7 6 4 39 39 H 1.08998 * 109.58625 * 6.18591 * 7 6 4 40 40 H 1.08998 * 109.50031 * 174.58725 * 8 7 6 41 41 H 1.09001 * 109.49616 * 294.65180 * 8 7 6 42 42 H 1.08994 * 109.45779 * 58.65535 * 9 8 7 43 43 H 1.08999 * 109.45805 * 178.61914 * 9 8 7 44 44 H 0.96997 * 119.99705 * 0.02562 * 14 12 10 45 45 H 1.08994 * 113.61422 * 203.66403 * 17 15 14 46 46 H 1.08996 * 113.61283 * 334.56778 * 17 15 14 47 47 H 0.97000 * 119.99465 * 72.53368 * 20 18 17 48 48 H 0.96996 * 120.00003 * 179.97438 * 24 23 21 49 49 H 1.08995 * 113.61681 * 220.02255 * 29 18 17 50 50 H 1.09000 * 113.61050 * 89.11651 * 29 18 17 51 51 H 1.09004 * 109.58777 * 353.67036 * 30 6 4 52 52 H 1.08994 * 109.58607 * 114.09373 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6098 0.0013 7 6 3.5003 3.8902 0.0019 8 6 4.0034 4.7385 1.1740 9 6 5.5252 4.8738 1.0844 10 6 6.1686 3.4885 1.1796 11 1 5.8807 3.0173 2.1194 12 6 7.6683 3.6255 1.1237 13 8 8.2941 3.0847 0.2366 14 7 8.3142 4.3491 2.0595 15 6 9.7722 4.4819 2.0055 16 1 10.2537 3.6533 1.4863 17 6 10.2476 5.8655 1.5316 18 6 10.2099 6.2949 3.0106 19 1 11.0457 6.9309 3.3021 20 7 8.9135 6.8289 3.4356 21 6 8.7686 8.1704 3.6686 22 1 9.6100 8.8350 3.5385 23 6 7.5402 8.6764 4.0708 24 7 6.5147 7.8665 4.2288 25 14 7.3424 10.5066 4.3878 26 1 7.6515 11.2602 3.1461 27 1 5.9449 10.7888 4.8037 28 1 8.2734 10.9257 5.4660 29 6 10.4114 4.8121 3.3647 30 6 5.6900 2.6259 0.0080 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6865 4.4146 -0.9353 39 1 2.4314 3.7078 0.1124 40 1 3.5471 5.7273 1.1297 41 1 3.7353 4.2559 2.1138 42 1 5.7935 5.3342 0.1336 43 1 5.8832 5.4974 1.9035 44 1 7.8138 4.7813 2.7692 45 1 11.2501 5.8599 1.1040 46 1 9.5223 6.3856 0.9059 47 1 8.1579 6.2319 3.5521 48 1 5.6564 8.2200 4.5102 49 1 9.8185 4.4823 4.2177 50 1 11.4588 4.5190 3.4373 51 1 6.0662 1.6096 0.1252 52 1 6.0551 3.0471 -0.9286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023122912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:49 Heat of formation + Delta-G solvation = -72.924958 kcal Electronic energy + Delta-G solvation = -30443.404254 eV Core-core repulsion = 26442.309873 eV Total energy + Delta-G solvation = -4001.094382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77573 -40.95289 -39.57141 -38.13131 -35.47382 -35.35973 -34.57422 -33.55824 -32.33774 -31.72929 -29.08498 -26.58845 -26.43536 -26.21557 -25.52766 -23.79770 -22.93112 -22.17938 -21.13334 -20.38312 -19.93098 -19.23243 -18.43335 -17.83696 -17.12126 -16.82892 -16.79281 -16.57489 -16.26981 -15.93426 -15.66782 -15.35954 -15.22914 -14.94449 -14.80949 -14.65581 -14.38511 -14.00935 -13.85867 -13.71504 -13.51499 -13.33200 -13.19933 -12.87734 -12.76183 -12.67742 -12.59343 -12.50669 -12.22545 -12.17640 -12.01571 -11.84201 -11.74002 -11.71546 -11.67481 -11.61035 -11.15629 -10.93679 -10.81101 -10.72446 -9.97721 -9.72959 -8.98165 -7.91897 -5.19201 1.51505 1.51792 1.52366 1.57541 1.57872 1.82464 2.28387 2.58621 3.39516 3.43609 3.53592 3.64490 3.72401 3.79357 3.88609 3.96339 4.00669 4.03526 4.10964 4.13131 4.18776 4.31022 4.38429 4.45020 4.53560 4.63459 4.69642 4.71613 4.74616 4.80507 4.81697 4.84288 4.87543 4.91678 4.95362 5.05885 5.07567 5.18701 5.22552 5.25577 5.29415 5.31835 5.36065 5.41875 5.50142 5.55304 5.71264 6.31203 6.38195 6.48974 7.11766 7.16227 7.38014 8.09137 8.33948 9.30131 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.002960 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.638018 B = 9457.471228 C =11236.507306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.505 3.495 5 O -0.591 6.591 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.125 4.125 9 C -0.107 4.107 10 C -0.109 4.109 11 H 0.103 0.897 12 C 0.521 3.479 13 O -0.581 6.581 14 N -0.697 5.697 15 C 0.119 3.881 16 H 0.093 0.907 17 C -0.176 4.176 18 C 0.147 3.853 19 H 0.069 0.931 20 N -0.713 5.713 21 C -0.248 4.248 22 H 0.072 0.928 23 C -0.061 4.061 24 N -0.954 5.954 25 Si 0.965 3.035 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.284 1.284 29 C -0.146 4.146 30 C 0.142 3.858 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.405 0.595 45 H 0.104 0.896 46 H 0.041 0.959 47 H 0.374 0.626 48 H 0.253 0.747 49 H 0.065 0.935 50 H 0.125 0.875 51 H 0.071 0.929 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -9.275 -7.030 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.296 3.704 5 O -0.472 6.472 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.163 4.163 9 C -0.145 4.145 10 C -0.131 4.131 11 H 0.121 0.879 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.349 5.349 15 C 0.014 3.986 16 H 0.111 0.889 17 C -0.217 4.217 18 C 0.037 3.963 19 H 0.087 0.913 20 N -0.354 5.354 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.255 4.255 24 N -0.604 5.604 25 Si 0.795 3.205 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.210 1.210 29 C -0.185 4.185 30 C 0.018 3.982 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.243 0.757 45 H 0.122 0.878 46 H 0.060 0.940 47 H 0.208 0.792 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.143 0.857 51 H 0.090 0.910 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.133 -9.991 -7.604 15.526 hybrid contribution -0.147 1.085 0.616 1.256 sum -9.281 -8.906 -6.988 14.639 Atomic orbital electron populations 1.21750 0.93386 1.02390 1.02864 1.21274 0.96914 0.94806 1.01876 1.21830 0.88212 1.00369 1.06675 1.21631 0.92109 0.82294 0.74354 1.90677 1.71734 1.32712 1.52071 1.48289 1.05925 1.07321 1.72741 1.22101 0.98136 0.82313 0.99257 1.21861 0.93596 1.01656 0.99196 1.21455 0.97189 0.93139 1.02729 1.21569 0.90428 0.99481 1.01637 0.87881 1.20799 0.90404 0.77172 0.80805 1.90642 1.69680 1.49314 1.36482 1.45932 1.07870 1.51292 1.29774 1.21861 0.80089 0.97938 0.98730 0.88906 1.24231 1.01302 0.96396 0.99820 1.21514 0.88585 0.93509 0.92686 0.91294 1.42290 1.07832 1.05260 1.80007 1.19532 0.95641 0.85440 1.37331 0.90978 1.25358 0.95965 1.01215 1.02942 1.69715 1.01288 1.34800 1.54590 0.85351 0.76247 0.81162 0.77722 1.21116 1.22023 1.20998 1.23770 1.02593 0.96698 0.95474 1.21019 0.80300 0.99972 0.96943 0.92425 0.91633 0.91448 0.92964 0.93169 0.86354 0.86122 0.89968 0.85871 0.88612 0.90963 0.91986 0.91761 0.75733 0.87778 0.94035 0.79182 0.93831 0.91646 0.85701 0.91038 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.11 -1.81 5.22 30.59 0.16 -1.65 16 3 C -0.13 -1.87 4.05 29.85 0.12 -1.75 16 4 C 0.51 12.28 7.70 87.65 0.67 12.96 16 5 O -0.59 -20.05 15.39 -3.04 -0.05 -20.09 16 6 N -0.61 -13.92 2.97 -818.99 -2.43 -16.36 16 7 C 0.10 1.61 6.34 86.36 0.55 2.16 16 8 C -0.13 -2.46 6.08 30.67 0.19 -2.28 16 9 C -0.11 -2.92 5.08 30.62 0.16 -2.76 16 10 C -0.11 -3.15 2.68 -11.48 -0.03 -3.18 16 11 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 12 C 0.52 18.10 7.16 87.66 0.63 18.73 16 13 O -0.58 -23.32 15.54 -3.05 -0.05 -23.36 16 14 N -0.70 -23.89 5.01 -440.02 -2.20 -26.09 16 15 C 0.12 3.87 4.30 45.52 0.20 4.06 16 16 H 0.09 3.00 7.50 -2.39 -0.02 2.98 16 17 C -0.18 -5.95 7.70 31.22 0.24 -5.71 16 18 C 0.15 5.39 4.57 45.61 0.21 5.60 16 19 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 20 N -0.71 -32.58 5.18 -320.01 -1.66 -34.24 16 21 C -0.25 -12.76 9.97 84.03 0.84 -11.92 16 22 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 23 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 24 N -0.95 -51.81 13.06 21.65 0.28 -51.53 16 25 Si 0.97 43.24 29.55 68.60 2.03 45.27 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 C -0.15 -4.33 7.58 31.12 0.24 -4.10 16 30 C 0.14 4.10 5.06 86.35 0.44 4.53 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.12 1.17 7.70 -2.39 -0.02 1.15 16 37 H 0.12 1.09 7.94 -2.39 -0.02 1.07 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.06 5.93 -2.39 -0.01 1.05 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 2.15 7.53 -2.39 -0.02 2.13 16 44 H 0.40 14.54 5.57 -92.71 -0.52 14.02 16 45 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 47 H 0.37 17.52 5.35 -92.71 -0.50 17.02 16 48 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 50 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 51 H 0.07 2.44 7.00 -2.38 -0.02 2.43 16 52 H 0.07 2.06 7.96 -2.39 -0.02 2.04 16 Total: -1.00 -68.49 407.53 1.60 -66.90 By element: Atomic # 1 Polarization: 48.52 SS G_CDS: -0.10 Total: 48.42 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.78 Total: 11.08 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -6.01 Total: -128.21 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.46 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.49 1.60 -66.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023122912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.029 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds