Wall clock time and date at job start Tue Mar 31 2020 19:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 C 1.50703 * 109.47131 * 179.97438 * 3 2 1 5 5 O 1.21291 * 119.99753 * 359.97438 * 4 3 2 6 6 N 1.34767 * 120.00303 * 180.02562 * 4 3 2 7 7 C 1.46938 * 120.60326 * 6.07257 * 6 4 3 8 8 C 1.53195 * 108.77010 * 233.58025 * 7 6 4 9 9 C 1.53042 * 109.33872 * 305.41467 * 8 7 6 10 10 C 1.53045 * 109.53864 * 61.35019 * 9 8 7 11 11 C 1.46930 * 120.63443 * 186.09633 * 6 4 3 12 12 H 1.08998 * 109.58935 * 246.17518 * 11 6 4 13 13 C 1.50703 * 109.58145 * 6.60296 * 11 6 4 14 14 O 1.21274 * 120.00473 * 61.36862 * 13 11 6 15 15 N 1.34784 * 119.99689 * 241.36664 * 13 11 6 16 16 C 1.46500 * 119.99788 * 179.97438 * 15 13 11 17 17 H 1.08992 * 112.85127 * 23.80612 * 16 15 13 18 18 C 1.53781 * 113.61366 * 155.00470 * 16 15 13 19 19 C 1.53778 * 87.08519 * 139.97774 * 18 16 15 20 20 H 1.09007 * 113.60651 * 89.19763 * 19 18 16 21 21 N 1.46494 * 113.61737 * 220.01760 * 19 18 16 22 22 C 1.36938 * 119.99979 * 205.00420 * 21 19 18 23 23 H 1.07995 * 120.00298 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99794 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00253 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99816 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47292 * 90.00027 * 26 24 22 28 28 H 1.48500 * 109.47360 * 209.99544 * 26 24 22 29 29 H 1.48496 * 109.47438 * 329.99557 * 26 24 22 30 30 C 1.53781 * 113.61234 * 252.49838 * 16 15 13 31 31 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47081 * 300.00473 * 1 2 3 33 33 H 1.09001 * 109.46460 * 60.00019 * 1 2 3 34 34 H 1.09004 * 109.47135 * 240.00076 * 2 1 3 35 35 H 1.08998 * 109.46951 * 119.99845 * 2 1 3 36 36 H 1.09004 * 109.47075 * 60.00039 * 3 2 1 37 37 H 1.08998 * 109.47102 * 299.99753 * 3 2 1 38 38 H 1.08999 * 109.55758 * 113.81473 * 7 6 4 39 39 H 1.08998 * 109.61685 * 353.38441 * 7 6 4 40 40 H 1.09002 * 109.49936 * 185.44690 * 8 7 6 41 41 H 1.09001 * 109.50034 * 65.38171 * 8 7 6 42 42 H 1.08998 * 109.45873 * 181.37062 * 9 8 7 43 43 H 1.08999 * 109.46163 * 301.34219 * 9 8 7 44 44 H 1.08998 * 109.49836 * 58.58859 * 10 9 8 45 45 H 1.09001 * 109.49548 * 178.68629 * 10 9 8 46 46 H 0.96996 * 119.99815 * 0.02562 * 15 13 11 47 47 H 1.09000 * 113.61249 * 254.53129 * 18 16 15 48 48 H 1.09006 * 113.61600 * 25.34518 * 18 16 15 49 49 H 0.96999 * 120.00034 * 25.00169 * 21 19 18 50 50 H 0.97002 * 120.00282 * 180.02562 * 25 24 22 51 51 H 1.08997 * 113.61603 * 334.56888 * 30 16 15 52 52 H 1.09003 * 113.61340 * 105.47492 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1535 0.3921 0.0015 6 7 4.2209 2.6096 0.0013 7 6 3.5058 3.8862 0.1351 8 6 3.9077 4.8005 -1.0265 9 6 5.4318 4.9338 -1.0627 10 6 6.0607 3.5574 -1.2915 11 6 5.6840 2.6294 -0.1324 12 1 6.1304 2.9984 0.7911 13 6 6.1841 1.2366 -0.4174 14 8 5.8281 0.6582 -1.4221 15 7 7.0270 0.6338 0.4444 16 6 7.5127 -0.7204 0.1676 17 1 7.4815 -0.9728 -0.8922 18 6 8.8591 -1.0409 0.8379 19 6 8.2893 -2.4379 1.1351 20 1 8.4713 -3.1617 0.3405 21 7 8.6462 -2.9474 2.4614 22 6 8.6771 -4.2970 2.6909 23 1 8.4380 -4.9859 1.8943 24 6 9.0148 -4.7797 3.9478 25 7 9.3058 -3.9402 4.9188 26 14 9.0563 -6.6208 4.2611 27 1 10.4157 -7.1422 3.9689 28 1 8.7182 -6.8889 5.6820 29 1 8.0679 -7.2950 3.3814 30 6 6.8936 -1.7947 1.0772 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.7743 4.3574 1.0807 39 1 2.4309 3.7084 0.1053 40 1 3.4596 5.7843 -0.8870 41 1 3.5576 4.3712 -1.9653 42 1 5.7186 5.6034 -1.8736 43 1 5.7834 5.3404 -0.1145 44 1 5.6905 3.1393 -2.2275 45 1 7.1451 3.6565 -1.3404 46 1 7.3115 1.0963 1.2481 47 1 9.7004 -1.0507 0.1449 48 1 9.0540 -0.4482 1.7317 49 1 8.8607 -2.3287 3.1770 50 1 9.5421 -4.2775 5.7970 51 1 6.5505 -1.4092 2.0373 52 1 6.1482 -2.4133 0.5774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023124925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:16 Heat of formation + Delta-G solvation = -45.293777 kcal Electronic energy + Delta-G solvation = -30539.196275 eV Core-core repulsion = 26539.300072 eV Total energy + Delta-G solvation = -3999.896204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05329 -39.07261 -37.84479 -37.30438 -34.53738 -33.88669 -33.17803 -32.62062 -31.59158 -29.72872 -28.32358 -25.95033 -24.93770 -24.63672 -23.89048 -22.56623 -21.85109 -20.86152 -20.31013 -19.42704 -18.82542 -17.53593 -17.03410 -16.60378 -16.37012 -15.91758 -15.67435 -14.93752 -14.79657 -14.57606 -14.39177 -14.26039 -14.09997 -13.97385 -13.68008 -13.28846 -13.08395 -13.04198 -12.94504 -12.57085 -12.19109 -11.96864 -11.83893 -11.80893 -11.74805 -11.51327 -11.33532 -11.23207 -11.16418 -11.04387 -10.89039 -10.85190 -10.47513 -10.39542 -10.17059 -9.96317 -9.61090 -9.52881 -9.29986 -8.87469 -8.81701 -8.44197 -6.89818 -5.73846 -3.01746 2.42246 2.60013 3.28897 3.41750 3.46705 3.51972 3.53962 4.27300 4.34469 4.47526 4.55605 4.63876 4.66899 4.68659 4.81866 4.83624 4.90602 5.03430 5.11450 5.21289 5.24787 5.27068 5.34029 5.37944 5.41659 5.45461 5.46062 5.53710 5.56634 5.60446 5.63628 5.67622 5.87908 5.95472 6.00545 6.01439 6.08399 6.16148 6.24173 6.29447 6.37270 6.47594 6.72429 6.85052 6.96445 7.16348 7.24232 7.75320 7.88947 8.10490 8.45078 8.66922 9.56161 10.14268 10.49091 11.48875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.002687 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.991807 B =10418.697045 C =11817.065951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.502 3.498 5 O -0.487 6.487 6 N -0.610 5.610 7 C 0.110 3.890 8 C -0.138 4.138 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.128 3.872 12 H 0.083 0.917 13 C 0.535 3.465 14 O -0.531 6.531 15 N -0.712 5.712 16 C 0.129 3.871 17 H 0.104 0.896 18 C -0.160 4.160 19 C 0.166 3.834 20 H 0.078 0.922 21 N -0.711 5.711 22 C -0.239 4.239 23 H 0.072 0.928 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 C -0.165 4.165 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.393 0.607 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.075 0.925 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 23.566 -11.502 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.290 3.710 5 O -0.359 6.359 6 N -0.348 5.348 7 C -0.013 4.013 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.101 0.899 13 C 0.320 3.680 14 O -0.408 6.408 15 N -0.362 5.362 16 C 0.024 3.976 17 H 0.122 0.878 18 C -0.200 4.200 19 C 0.054 3.946 20 H 0.096 0.904 21 N -0.349 5.349 22 C -0.371 4.371 23 H 0.090 0.910 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.207 4.207 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.094 0.906 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.337 22.307 -12.212 29.194 hybrid contribution 0.164 -0.299 1.008 1.065 sum -14.172 22.008 -11.204 28.473 Atomic orbital electron populations 1.21779 0.95552 1.02046 1.01453 1.21304 0.95116 0.94550 1.03998 1.21691 0.91510 1.00306 1.03709 1.20903 0.90569 0.83257 0.76289 1.90857 1.68225 1.30418 1.46444 1.48018 1.05307 1.06575 1.74878 1.21762 0.97146 0.83648 0.98698 1.21951 0.96681 0.99777 0.99180 1.21507 0.95053 0.96524 1.02442 1.21823 1.01302 0.94623 0.98315 1.21161 0.81752 0.95289 0.99713 0.89905 1.19670 0.78187 0.86234 0.83872 1.90657 1.56378 1.65067 1.28655 1.45845 1.48396 1.17284 1.24680 1.22314 0.94839 0.80564 0.99848 0.87759 1.23870 0.95864 1.00109 1.00133 1.21397 0.92079 0.91425 0.89726 0.90430 1.42352 1.80921 1.04743 1.06879 1.19331 1.38698 0.83462 0.95580 0.91036 1.24750 1.02479 0.97718 0.96113 1.69660 1.53490 1.32844 1.02333 0.86180 0.77664 0.85250 0.77077 1.21724 1.21815 1.20710 1.24185 1.00328 0.97303 0.98921 0.92318 0.92805 0.92870 0.91045 0.91045 0.89247 0.89208 0.91110 0.89346 0.90509 0.91224 0.91157 0.91511 0.90249 0.90393 0.77364 0.91759 0.90194 0.78173 0.93553 0.90604 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.11 -1.18 5.22 -26.73 -0.14 -1.32 16 3 C -0.13 -1.19 4.06 -27.88 -0.11 -1.30 16 4 C 0.50 6.48 7.39 -10.99 -0.08 6.40 16 5 O -0.49 -8.68 11.75 -19.12 -0.22 -8.90 16 6 N -0.61 -6.23 2.97 -166.52 -0.49 -6.73 16 7 C 0.11 0.66 6.35 -3.70 -0.02 0.63 16 8 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 9 C -0.12 -0.69 5.88 -26.69 -0.16 -0.84 16 10 C -0.12 -1.08 5.32 -26.61 -0.14 -1.22 16 11 C 0.13 1.39 3.31 -68.75 -0.23 1.16 16 12 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 13 C 0.53 8.20 4.37 -10.98 -0.05 8.15 16 14 O -0.53 -10.30 14.20 -19.11 -0.27 -10.57 16 15 N -0.71 -10.66 5.35 -53.02 -0.28 -10.94 16 16 C 0.13 2.22 4.24 -67.12 -0.28 1.94 16 17 H 0.10 1.91 7.46 -51.93 -0.39 1.52 16 18 C -0.16 -2.75 7.58 -25.92 -0.20 -2.95 16 19 C 0.17 3.51 4.48 -67.12 -0.30 3.21 16 20 H 0.08 1.64 8.10 -51.92 -0.42 1.22 16 21 N -0.71 -18.45 5.40 -52.64 -0.28 -18.73 16 22 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 23 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 24 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 26 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.17 -3.31 7.68 -25.92 -0.20 -3.51 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.09 0.60 7.69 -51.93 -0.40 0.20 16 37 H 0.09 0.65 7.94 -51.93 -0.41 0.23 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.38 5.93 -51.93 -0.31 0.08 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.39 4.97 8.57 -40.82 -0.35 4.62 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 49 H 0.38 10.45 7.92 -40.82 -0.32 10.13 16 50 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 52 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -36.36 408.57 -10.96 -47.32 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -9.31 Total: 11.35 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.95 Total: 1.12 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.34 Total: -64.38 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.50 Total: -19.47 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.36 -10.96 -47.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023124925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.025 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds