Wall clock time and date at job start Tue Mar 31 2020 19:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47406 * 2 1 4 4 C 1.50697 * 109.47185 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00191 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99615 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63436 * 3.77117 * 6 4 3 8 8 C 1.53191 * 108.77335 * 126.41148 * 7 6 4 9 9 C 1.53040 * 109.31318 * 54.63689 * 8 7 6 10 10 C 1.53029 * 109.53886 * 298.63133 * 9 8 7 11 11 C 1.46933 * 120.62787 * 183.79080 * 6 4 3 12 12 H 1.09006 * 109.58494 * 113.65770 * 11 6 4 13 13 C 1.50699 * 109.58660 * 353.37802 * 11 6 4 14 14 O 1.21286 * 119.99900 * 294.24892 * 13 11 6 15 15 N 1.34775 * 120.00112 * 114.25313 * 13 11 6 16 16 C 1.46498 * 120.00001 * 179.97438 * 15 13 11 17 17 H 1.09000 * 112.84882 * 23.80547 * 16 15 13 18 18 C 1.53781 * 113.61277 * 154.99871 * 16 15 13 19 19 C 1.53776 * 87.08058 * 89.20510 * 18 16 15 20 20 H 1.08999 * 113.61714 * 139.98580 * 19 18 16 21 21 N 1.46506 * 113.61374 * 270.79548 * 19 18 16 22 22 C 1.36929 * 120.00281 * 203.46903 * 21 19 18 23 23 H 1.08001 * 120.00178 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99953 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99852 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47023 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47083 * 119.99777 * 26 24 22 29 29 H 1.48497 * 109.47412 * 239.99812 * 26 24 22 30 30 C 1.53777 * 87.08410 * 25.42959 * 19 18 16 31 31 H 1.09007 * 109.46991 * 60.00217 * 1 2 3 32 32 H 1.09005 * 109.47404 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47511 * 300.00002 * 1 2 3 34 34 H 1.08997 * 109.47650 * 239.99225 * 2 1 3 35 35 H 1.09007 * 109.46991 * 119.99783 * 2 1 3 36 36 H 1.08996 * 109.46787 * 59.99554 * 3 2 1 37 37 H 1.08995 * 109.46516 * 299.99729 * 3 2 1 38 38 H 1.09004 * 109.58398 * 246.19685 * 7 6 4 39 39 H 1.08994 * 109.58028 * 6.47809 * 7 6 4 40 40 H 1.09008 * 109.49312 * 174.58567 * 8 7 6 41 41 H 1.08993 * 109.49717 * 294.64845 * 8 7 6 42 42 H 1.08999 * 109.45993 * 58.65533 * 9 8 7 43 43 H 1.09004 * 109.45878 * 178.60672 * 9 8 7 44 44 H 1.09002 * 109.50334 * 301.41592 * 10 9 8 45 45 H 1.09003 * 109.49925 * 181.31904 * 10 9 8 46 46 H 0.97000 * 120.00420 * 359.97438 * 15 13 11 47 47 H 1.08995 * 113.61738 * 334.64901 * 18 16 15 48 48 H 1.09010 * 113.61339 * 203.75155 * 18 16 15 49 49 H 0.97004 * 119.99309 * 23.47483 * 21 19 18 50 50 H 0.96999 * 119.99888 * 180.02562 * 25 24 22 51 51 H 1.09005 * 113.61461 * 89.11554 * 30 19 18 52 52 H 1.08994 * 113.61904 * 220.02116 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2208 2.6096 0.0002 7 6 3.5026 3.8888 0.0823 8 6 4.0771 4.7030 1.2458 9 6 5.5907 4.8423 1.0674 10 6 6.2376 3.4556 1.0826 11 6 5.6877 2.6271 -0.0828 12 1 5.9949 3.0739 -1.0284 13 6 6.2155 1.2183 0.0054 14 8 6.0775 0.5820 1.0287 15 7 6.8410 0.6655 -1.0527 16 6 7.3546 -0.7038 -0.9668 17 1 6.8417 -1.3017 -0.2134 18 6 7.4752 -1.4032 -2.3310 19 6 8.8960 -0.8211 -2.4155 20 1 9.6276 -1.5137 -2.8318 21 7 8.9510 0.5050 -3.0358 22 6 10.1127 0.9431 -3.6133 23 1 10.9884 0.3109 -3.6120 24 6 10.1649 2.1998 -4.2006 25 7 9.0979 2.9705 -4.2018 26 14 11.7494 2.7972 -4.9891 27 1 12.7944 1.7507 -4.8547 28 1 11.5113 3.0778 -6.4278 29 1 12.2025 4.0383 -4.3111 30 6 8.8877 -0.7843 -0.8782 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6767 1.9562 -0.8900 38 1 3.6317 4.4407 -0.8488 39 1 2.4424 3.7021 0.2524 40 1 3.6196 5.6923 1.2583 41 1 3.8665 4.1929 2.1857 42 1 5.8007 5.3306 0.1158 43 1 5.9985 5.4423 1.8810 44 1 6.0072 2.9568 2.0240 45 1 7.3180 3.5569 0.9790 46 1 6.9511 1.1743 -1.8712 47 1 6.7957 -1.0078 -3.0860 48 1 7.4521 -2.4912 -2.2675 49 1 8.1645 1.0727 -3.0373 50 1 9.1343 3.8485 -4.6125 51 1 9.2508 -1.7030 -0.4174 52 1 9.3485 0.1107 -0.4603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023124927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:19 Heat of formation + Delta-G solvation = -59.366607 kcal Electronic energy + Delta-G solvation = -31435.636372 eV Core-core repulsion = 27435.129925 eV Total energy + Delta-G solvation = -4000.506447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05197 -40.62999 -39.01805 -38.29488 -35.47753 -35.31848 -34.05500 -33.91216 -32.42280 -31.70433 -29.02053 -26.87445 -26.56815 -26.14446 -25.10617 -23.94322 -23.04275 -21.62568 -21.52715 -20.55745 -19.71320 -19.28520 -18.53303 -17.56465 -17.26716 -16.87632 -16.73615 -16.46246 -15.97882 -15.66491 -15.47327 -15.44477 -15.09085 -14.99393 -14.85934 -14.73534 -14.40911 -14.05141 -13.81587 -13.68817 -13.48866 -13.30263 -13.19796 -12.86525 -12.82053 -12.63918 -12.56652 -12.49566 -12.16382 -12.10740 -11.99891 -11.77917 -11.76325 -11.72917 -11.65696 -11.59556 -11.15283 -10.84506 -10.63784 -10.47424 -9.85971 -9.64982 -9.02696 -7.95913 -5.23992 1.48299 1.49102 1.49865 1.58542 1.65273 2.19724 2.31840 2.55938 3.36185 3.44589 3.63887 3.74746 3.78019 3.82374 3.90135 3.96952 4.00520 4.04988 4.09462 4.11448 4.18864 4.29554 4.37338 4.44795 4.56951 4.62377 4.68903 4.71554 4.79187 4.82516 4.84012 4.86865 4.88271 4.92272 5.02258 5.04384 5.08433 5.14255 5.19091 5.22705 5.26028 5.36888 5.40435 5.42750 5.48577 5.53359 5.81067 6.27527 6.37705 6.64593 7.16640 7.33035 7.48104 8.04862 8.29789 9.27381 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003572 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.390173 B = 7836.298377 C = 8977.145910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.123 4.123 4 C 0.485 3.515 5 O -0.550 6.550 6 N -0.603 5.603 7 C 0.100 3.900 8 C -0.130 4.130 9 C -0.115 4.115 10 C -0.115 4.115 11 C 0.126 3.874 12 H 0.087 0.913 13 C 0.536 3.464 14 O -0.571 6.571 15 N -0.703 5.703 16 C 0.132 3.868 17 H 0.078 0.922 18 C -0.146 4.146 19 C 0.153 3.847 20 H 0.071 0.929 21 N -0.715 5.715 22 C -0.245 4.245 23 H 0.076 0.924 24 C -0.068 4.068 25 N -0.962 5.962 26 Si 0.971 3.029 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.294 1.294 30 C -0.176 4.176 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.059 0.941 48 H 0.121 0.879 49 H 0.372 0.628 50 H 0.252 0.748 51 H 0.103 0.897 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 3.412 9.579 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.162 4.162 4 C 0.275 3.725 5 O -0.427 6.427 6 N -0.339 5.339 7 C -0.021 4.021 8 C -0.168 4.168 9 C -0.153 4.153 10 C -0.154 4.154 11 C 0.019 3.981 12 H 0.105 0.895 13 C 0.324 3.676 14 O -0.450 6.450 15 N -0.355 5.355 16 C 0.027 3.973 17 H 0.096 0.904 18 C -0.185 4.185 19 C 0.042 3.958 20 H 0.089 0.911 21 N -0.356 5.356 22 C -0.376 4.376 23 H 0.094 0.906 24 C -0.261 4.261 25 N -0.612 5.612 26 Si 0.801 3.199 27 H -0.195 1.195 28 H -0.220 1.220 29 H -0.221 1.221 30 C -0.218 4.218 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.233 0.767 47 H 0.077 0.923 48 H 0.139 0.861 49 H 0.206 0.794 50 H 0.061 0.939 51 H 0.121 0.879 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.586 2.410 10.215 20.480 hybrid contribution 1.161 0.677 -0.825 1.577 sum -16.426 3.087 9.390 19.170 Atomic orbital electron populations 1.21729 0.92972 1.02383 1.02966 1.21244 0.97167 0.94921 1.01393 1.21758 0.87933 1.00123 1.06424 1.21847 0.92437 0.82921 0.75265 1.90806 1.69448 1.32525 1.49950 1.48235 1.03984 1.07955 1.73701 1.22191 0.97591 0.82127 1.00170 1.21932 0.94938 1.01792 0.98095 1.21531 0.96235 0.94000 1.03487 1.21753 1.00212 0.97062 0.96358 1.21123 0.82726 0.93065 1.01179 0.89539 1.20210 0.76064 0.88093 0.83206 1.90573 1.58756 1.63610 1.32105 1.45756 1.58517 1.15265 1.15971 1.21612 0.94232 0.83059 0.98441 0.90413 1.23738 0.97674 1.01668 0.95453 1.21411 0.95861 0.87116 0.91365 0.91092 1.42348 1.11866 1.14731 1.66609 1.19668 0.91099 0.98976 1.27875 0.90631 1.25469 1.00434 0.97371 1.02803 1.69767 1.29466 1.10732 1.51271 0.85105 0.79599 0.77761 0.77432 1.19504 1.21991 1.22147 1.24204 0.95727 1.01455 1.00417 0.91359 0.92550 0.91298 0.93593 0.93708 0.86343 0.86262 0.89713 0.86283 0.87162 0.91897 0.90911 0.89836 0.92201 0.91709 0.76696 0.92261 0.86101 0.79368 0.93866 0.87912 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.11 -2.25 5.22 30.59 0.16 -2.09 16 3 C -0.12 -2.18 4.08 29.85 0.12 -2.06 16 4 C 0.49 14.10 7.56 87.66 0.66 14.76 16 5 O -0.55 -21.88 11.52 20.69 0.24 -21.64 16 6 N -0.60 -15.45 2.97 -799.17 -2.38 -17.82 16 7 C 0.10 1.46 6.33 86.36 0.55 2.01 16 8 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 9 C -0.12 -2.13 5.88 30.62 0.18 -1.95 16 10 C -0.12 -3.21 5.29 30.67 0.16 -3.05 16 11 C 0.13 4.04 3.32 44.23 0.15 4.18 16 12 H 0.09 2.81 7.93 -2.38 -0.02 2.79 16 13 C 0.54 21.78 4.38 87.66 0.38 22.16 16 14 O -0.57 -26.73 14.12 20.68 0.29 -26.44 16 15 N -0.70 -28.85 5.14 -440.04 -2.26 -31.11 16 16 C 0.13 5.21 4.32 45.52 0.20 5.40 16 17 H 0.08 3.25 7.46 -2.39 -0.02 3.23 16 18 C -0.15 -5.20 7.58 31.12 0.24 -4.96 16 19 C 0.15 6.25 4.55 45.51 0.21 6.46 16 20 H 0.07 2.79 8.11 -2.39 -0.02 2.78 16 21 N -0.72 -35.67 5.17 -320.45 -1.66 -37.32 16 22 C -0.24 -13.37 9.97 84.04 0.84 -12.54 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 25 N -0.96 -55.89 13.06 21.65 0.28 -55.61 16 26 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 29 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 30 C -0.18 -6.84 7.68 31.12 0.24 -6.61 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 35 H 0.04 1.13 8.10 -2.38 -0.02 1.11 16 36 H 0.12 1.44 7.54 -2.39 -0.02 1.42 16 37 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.12 0.98 5.95 -2.39 -0.01 0.97 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.86 7.86 -2.39 -0.02 1.84 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.40 16.96 6.01 -92.71 -0.56 16.40 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 49 H 0.37 19.30 5.37 -92.70 -0.50 18.81 16 50 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 52 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.41 403.03 1.85 -74.56 By element: Atomic # 1 Polarization: 52.60 SS G_CDS: -0.15 Total: 52.46 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 5.45 Total: 15.64 kcal Atomic # 7 Polarization: -135.85 SS G_CDS: -6.01 Total: -141.86 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: 0.53 Total: -48.08 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.41 1.85 -74.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023124927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.195 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds