Wall clock time and date at job start Tue Mar 31 2020 19:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47025 * 2 1 4 4 C 1.50701 * 109.46933 * 240.00074 * 2 1 3 5 5 N 1.34782 * 119.99985 * 54.80689 * 4 2 1 6 6 O 1.21278 * 119.99764 * 234.80125 * 4 2 1 7 7 C 1.50696 * 109.47099 * 120.00101 * 2 1 3 8 8 O 1.21285 * 120.00029 * 116.38392 * 7 2 1 9 9 N 1.34782 * 120.00030 * 296.38071 * 7 2 1 10 10 C 1.46956 * 120.65466 * 6.75313 * 9 7 2 11 11 C 1.53190 * 108.89132 * 233.53696 * 10 9 7 12 12 C 1.53036 * 109.31309 * 305.44700 * 11 10 9 13 13 C 1.53033 * 109.53934 * 61.36223 * 12 11 10 14 14 C 1.46927 * 120.62926 * 186.94442 * 9 7 2 15 15 H 1.09005 * 109.57897 * 246.32115 * 14 9 7 16 16 C 1.53005 * 109.58880 * 6.59708 * 14 9 7 17 17 H 1.09001 * 109.87285 * 302.11775 * 16 14 9 18 18 C 1.54322 * 109.88131 * 63.12801 * 16 14 9 19 19 C 1.55153 * 102.94078 * 141.60892 * 18 16 14 20 20 C 1.54908 * 101.58375 * 324.49827 * 19 18 16 21 21 N 1.47177 * 109.79518 * 180.91483 * 16 14 9 22 22 C 1.36933 * 125.73837 * 61.64807 * 21 16 14 23 23 H 1.08001 * 120.00080 * 5.50961 * 22 21 16 24 24 C 1.38815 * 120.00313 * 185.50832 * 22 21 16 25 25 N 1.31625 * 119.99656 * 5.40607 * 24 22 21 26 26 Si 1.86797 * 120.00268 * 185.40179 * 24 22 21 27 27 H 1.48497 * 109.47072 * 5.00370 * 26 24 22 28 28 H 1.48497 * 109.46890 * 125.00049 * 26 24 22 29 29 H 1.48502 * 109.46957 * 245.00297 * 26 24 22 30 30 H 1.09007 * 109.46662 * 304.81448 * 1 2 3 31 31 H 1.09001 * 109.46927 * 64.80780 * 1 2 3 32 32 H 1.08994 * 109.47300 * 184.80991 * 1 2 3 33 33 H 1.09002 * 109.46557 * 185.84272 * 3 2 1 34 34 H 1.08991 * 109.46826 * 305.84290 * 3 2 1 35 35 H 1.08999 * 109.46694 * 65.84648 * 3 2 1 36 36 H 0.96993 * 119.99757 * 359.97438 * 5 4 2 37 37 H 0.96992 * 119.99827 * 180.02562 * 5 4 2 38 38 H 1.09002 * 109.46304 * 113.75293 * 10 9 7 39 39 H 1.09002 * 109.59314 * 353.39954 * 10 9 7 40 40 H 1.08997 * 109.49653 * 185.48781 * 11 10 9 41 41 H 1.09010 * 109.49362 * 65.39573 * 11 10 9 42 42 H 1.09000 * 109.45921 * 301.34520 * 12 11 10 43 43 H 1.08996 * 109.44810 * 181.37816 * 12 11 10 44 44 H 1.09001 * 109.50175 * 178.68570 * 13 12 11 45 45 H 1.09004 * 109.52709 * 58.60771 * 13 12 11 46 46 H 1.09004 * 110.71803 * 23.24974 * 18 16 14 47 47 H 1.08997 * 110.72199 * 259.97337 * 18 16 14 48 48 H 1.09002 * 111.00382 * 206.42310 * 19 18 16 49 49 H 1.09006 * 111.03556 * 82.59067 * 19 18 16 50 50 H 1.09001 * 110.36239 * 155.84464 * 20 19 18 51 51 H 1.08993 * 110.36865 * 278.06278 * 20 19 18 52 52 H 0.96998 * 119.99955 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6227 -0.3141 -2.4519 6 8 2.8052 -1.6386 -1.1217 7 6 2.0323 -0.7104 1.2304 8 8 2.6745 -1.7334 1.1203 9 7 1.7680 -0.2090 2.4532 10 6 0.8701 0.9435 2.6124 11 6 1.5920 2.0269 3.4197 12 6 2.0879 1.4295 4.7385 13 6 3.0805 0.3015 4.4482 14 6 2.3754 -0.8016 3.6526 15 1 1.5995 -1.2571 4.2680 16 6 3.3933 -1.8665 3.2393 17 1 2.9056 -2.6295 2.6326 18 6 4.5403 -1.2138 2.4394 19 6 5.7928 -1.9815 2.9386 20 6 5.4397 -2.2174 4.4284 21 7 3.9888 -2.4786 4.4380 22 6 3.3100 -3.1767 5.4008 23 1 2.2597 -3.3926 5.2718 24 6 3.9718 -3.6068 6.5427 25 7 5.2226 -3.2536 6.7509 26 14 3.0873 -4.6868 7.7840 27 1 1.7419 -5.0391 7.2636 28 1 3.8718 -5.9276 8.0082 29 1 2.9453 -3.9523 9.0667 30 1 -0.3633 0.5868 0.8438 31 1 -0.3633 0.4374 -0.9299 32 1 -0.3633 -1.0240 0.0862 33 1 3.1250 1.4443 -0.1046 34 1 1.5938 1.9856 -0.8330 35 1 1.7646 1.9252 0.9377 36 1 1.0043 0.4281 -2.5388 37 1 1.9457 -0.7716 -3.2438 38 1 -0.0302 0.6320 3.1422 39 1 0.6020 1.3362 1.6316 40 1 0.9031 2.8456 3.6273 41 1 2.4412 2.4015 2.8479 42 1 1.2411 1.0329 5.2986 43 1 2.5805 2.2046 5.3255 44 1 3.4509 -0.1080 5.3880 45 1 3.9159 0.6919 3.8671 46 1 4.6193 -0.1524 2.6748 47 1 4.3977 -1.3630 1.3692 48 1 6.6900 -1.3702 2.8418 49 1 5.9083 -2.9277 2.4098 50 1 5.9830 -3.0797 4.8150 51 1 5.6693 -1.3298 5.0178 52 1 5.6849 -3.5539 7.5490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025239652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:30 Heat of formation + Delta-G solvation = 4.018769 kcal Electronic energy + Delta-G solvation = -33274.330627 eV Core-core repulsion = 29276.572776 eV Total energy + Delta-G solvation = -3997.757851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25761 -39.27644 -37.04148 -36.87413 -35.14465 -33.33506 -32.36404 -32.13545 -30.78612 -29.05644 -27.75840 -27.17817 -25.08847 -24.33476 -23.79874 -22.98460 -21.54671 -20.50514 -19.61998 -19.60587 -18.18779 -17.41874 -16.93962 -16.35269 -15.65542 -15.39633 -15.34716 -14.94245 -14.79807 -14.46353 -14.26481 -13.97723 -13.86642 -13.63728 -13.42511 -13.04423 -12.97001 -12.56913 -12.56114 -12.25708 -12.06908 -11.81185 -11.62260 -11.55232 -11.33299 -11.19210 -10.99554 -10.81956 -10.75526 -10.48576 -10.46194 -10.12436 -9.95923 -9.90691 -9.71036 -9.69030 -9.48472 -9.37893 -9.26885 -8.50002 -8.28988 -7.91541 -6.58187 -5.55687 -2.88303 2.64149 2.98222 3.11067 3.46820 3.53023 3.55171 3.57544 4.31650 4.48461 4.62780 4.73710 4.78775 4.87598 4.99650 5.10692 5.16798 5.30860 5.35554 5.42303 5.45761 5.50945 5.59288 5.59569 5.75986 5.81164 5.84179 5.89500 6.00425 6.04446 6.11270 6.16445 6.22475 6.28615 6.44654 6.56170 6.64694 6.70381 6.74273 6.86245 6.98383 7.08802 7.17811 7.20444 7.23739 7.66066 7.75575 7.80682 7.86459 8.01829 8.27510 8.46565 8.72805 9.38173 10.01114 10.70719 11.53935 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.004310 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.324565 B = 6495.520973 C = 7129.978293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.156 4.156 4 C 0.524 3.476 5 N -0.861 5.861 6 O -0.489 6.489 7 C 0.507 3.493 8 O -0.464 6.464 9 N -0.602 5.602 10 C 0.083 3.917 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.140 3.860 15 H 0.067 0.933 16 C 0.163 3.837 17 H 0.076 0.924 18 C -0.127 4.127 19 C -0.150 4.150 20 C 0.170 3.830 21 N -0.596 5.596 22 C -0.214 4.214 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.396 0.604 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.014 0.986 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 15.924 -15.554 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.213 4.213 4 C 0.306 3.694 5 N -0.427 5.427 6 O -0.360 6.360 7 C 0.292 3.708 8 O -0.335 6.335 9 N -0.338 5.338 10 C -0.040 4.040 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.160 4.160 14 C 0.036 3.964 15 H 0.085 0.915 16 C 0.056 3.944 17 H 0.094 0.906 18 C -0.165 4.165 19 C -0.188 4.188 20 C 0.045 3.955 21 N -0.321 5.321 22 C -0.343 4.343 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.569 5.569 26 Si 0.736 3.264 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.221 1.221 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.224 0.776 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.032 0.968 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.224 14.601 -15.116 23.371 hybrid contribution -0.743 -0.069 0.498 0.897 sum -10.967 14.532 -14.618 23.348 Atomic orbital electron populations 1.22201 0.91262 1.04028 1.03558 1.20891 0.98344 0.97689 0.94261 1.22211 1.02582 0.92314 1.04159 1.19929 0.81296 0.83787 0.84369 1.43842 1.51818 1.38925 1.08096 1.90919 1.32434 1.26911 1.85701 1.19632 0.81640 0.86093 0.83445 1.90831 1.35802 1.22164 1.84747 1.48148 1.47349 1.32009 1.06300 1.22347 0.93081 0.87210 1.01324 1.21963 1.00374 0.97417 0.97585 1.21534 0.99650 0.98425 0.96101 1.21906 0.97414 0.94834 1.01870 1.22127 0.96131 0.94087 0.84061 0.91513 1.21657 0.91941 0.92868 0.87910 0.90640 1.23076 0.95080 0.97530 1.00770 1.22997 0.96368 0.99090 1.00385 1.21506 0.85053 0.99758 0.89175 1.44765 1.03418 1.60806 1.23083 1.19047 0.93502 1.25783 0.95989 0.90908 1.24737 0.96545 1.01464 0.97905 1.69963 1.10201 1.49154 1.27557 0.86137 0.78570 0.80278 0.81380 1.20675 1.21910 1.22055 0.89654 0.91416 0.91301 0.91423 0.91374 0.89257 0.77621 0.76859 0.91738 0.88189 0.91418 0.91679 0.92155 0.92346 0.89282 0.91975 0.93258 0.89533 0.93360 0.92665 0.90350 0.96802 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.05 37.16 0.30 -0.89 16 2 C -0.10 -1.16 0.61 -156.81 -0.10 -1.25 16 3 C -0.16 -1.27 8.06 37.16 0.30 -0.97 16 4 C 0.52 6.72 6.74 -10.98 -0.07 6.64 16 5 N -0.86 -6.46 8.69 31.22 0.27 -6.18 16 6 O -0.49 -9.18 15.06 -18.90 -0.28 -9.46 16 7 C 0.51 8.12 5.61 -10.99 -0.06 8.06 16 8 O -0.46 -9.68 7.50 -18.90 -0.14 -9.83 16 9 N -0.60 -8.99 2.93 -165.19 -0.48 -9.48 16 10 C 0.08 0.86 4.33 -3.70 -0.02 0.85 16 11 C -0.14 -1.37 5.72 -26.61 -0.15 -1.53 16 12 C -0.12 -1.61 5.88 -26.70 -0.16 -1.77 16 13 C -0.12 -2.18 4.96 -26.62 -0.13 -2.32 16 14 C 0.14 2.67 2.66 -67.60 -0.18 2.49 16 15 H 0.07 1.40 7.96 -51.93 -0.41 0.99 16 16 C 0.16 3.73 2.31 -66.87 -0.15 3.58 16 17 H 0.08 1.96 5.89 -52.15 -0.31 1.66 16 18 C -0.13 -2.71 4.89 -24.90 -0.12 -2.83 16 19 C -0.15 -3.37 7.09 -24.59 -0.17 -3.54 16 20 C 0.17 4.44 5.57 -2.53 -0.01 4.42 16 21 N -0.60 -15.78 2.57 -162.46 -0.42 -16.20 16 22 C -0.21 -6.10 9.82 -15.06 -0.15 -6.25 16 23 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.32 5.46 -17.43 -0.10 -0.41 16 25 N -0.92 -27.62 10.36 55.49 0.58 -27.04 16 26 Si 0.90 22.76 29.56 -169.99 -5.02 17.73 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H 0.08 0.55 4.84 -51.93 -0.25 0.30 16 31 H 0.07 0.32 7.14 -51.93 -0.37 -0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.09 0.67 3.75 -51.93 -0.19 0.48 16 36 H 0.40 1.58 7.81 -40.82 -0.32 1.27 16 37 H 0.40 2.70 8.93 -40.82 -0.36 2.34 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.76 2.47 -51.93 -0.13 0.63 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.67 7.48 -51.92 -0.39 0.28 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.95 7.85 -51.93 -0.41 1.54 16 45 H 0.06 1.13 5.73 -51.93 -0.30 0.83 16 46 H 0.05 0.99 5.48 -51.93 -0.28 0.71 16 47 H 0.09 1.94 5.57 -52.05 -0.29 1.65 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.08 2.29 6.46 -51.93 -0.34 1.95 16 51 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -36.16 370.59 -9.02 -45.18 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.12 Total: 5.42 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.98 Total: 4.28 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.06 Total: -58.90 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.43 Total: -19.29 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.16 -9.02 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025239652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.197 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds