Wall clock time and date at job start Tue Mar 31 2020 19:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47025 * 2 1 4 4 C 1.50701 * 109.46933 * 240.00074 * 2 1 3 5 5 N 1.34782 * 119.99985 * 54.80689 * 4 2 1 6 6 O 1.21278 * 119.99764 * 234.80125 * 4 2 1 7 7 C 1.50696 * 109.47099 * 120.00101 * 2 1 3 8 8 O 1.21285 * 120.00029 * 116.38392 * 7 2 1 9 9 N 1.34782 * 120.00030 * 296.38071 * 7 2 1 10 10 C 1.46956 * 120.65466 * 6.75313 * 9 7 2 11 11 C 1.53190 * 108.89132 * 233.53696 * 10 9 7 12 12 C 1.53036 * 109.31309 * 305.44700 * 11 10 9 13 13 C 1.53033 * 109.53934 * 61.36223 * 12 11 10 14 14 C 1.46927 * 120.62926 * 186.94442 * 9 7 2 15 15 H 1.09005 * 109.57897 * 246.32115 * 14 9 7 16 16 C 1.53005 * 109.58880 * 6.59708 * 14 9 7 17 17 H 1.09001 * 109.87285 * 302.11775 * 16 14 9 18 18 C 1.54322 * 109.88131 * 63.12801 * 16 14 9 19 19 C 1.55153 * 102.94078 * 141.60892 * 18 16 14 20 20 C 1.54908 * 101.58375 * 324.49827 * 19 18 16 21 21 N 1.47177 * 109.79518 * 180.91483 * 16 14 9 22 22 C 1.36933 * 125.73837 * 61.64807 * 21 16 14 23 23 H 1.08001 * 120.00080 * 5.50961 * 22 21 16 24 24 C 1.38815 * 120.00313 * 185.50832 * 22 21 16 25 25 N 1.31625 * 119.99656 * 5.40607 * 24 22 21 26 26 Si 1.86797 * 120.00268 * 185.40179 * 24 22 21 27 27 H 1.48497 * 109.47072 * 5.00370 * 26 24 22 28 28 H 1.48497 * 109.46890 * 125.00049 * 26 24 22 29 29 H 1.48502 * 109.46957 * 245.00297 * 26 24 22 30 30 H 1.09007 * 109.46662 * 304.81448 * 1 2 3 31 31 H 1.09001 * 109.46927 * 64.80780 * 1 2 3 32 32 H 1.08994 * 109.47300 * 184.80991 * 1 2 3 33 33 H 1.09002 * 109.46557 * 185.84272 * 3 2 1 34 34 H 1.08991 * 109.46826 * 305.84290 * 3 2 1 35 35 H 1.08999 * 109.46694 * 65.84648 * 3 2 1 36 36 H 0.96993 * 119.99757 * 359.97438 * 5 4 2 37 37 H 0.96992 * 119.99827 * 180.02562 * 5 4 2 38 38 H 1.09002 * 109.46304 * 113.75293 * 10 9 7 39 39 H 1.09002 * 109.59314 * 353.39954 * 10 9 7 40 40 H 1.08997 * 109.49653 * 185.48781 * 11 10 9 41 41 H 1.09010 * 109.49362 * 65.39573 * 11 10 9 42 42 H 1.09000 * 109.45921 * 301.34520 * 12 11 10 43 43 H 1.08996 * 109.44810 * 181.37816 * 12 11 10 44 44 H 1.09001 * 109.50175 * 178.68570 * 13 12 11 45 45 H 1.09004 * 109.52709 * 58.60771 * 13 12 11 46 46 H 1.09004 * 110.71803 * 23.24974 * 18 16 14 47 47 H 1.08997 * 110.72199 * 259.97337 * 18 16 14 48 48 H 1.09002 * 111.00382 * 206.42310 * 19 18 16 49 49 H 1.09006 * 111.03556 * 82.59067 * 19 18 16 50 50 H 1.09001 * 110.36239 * 155.84464 * 20 19 18 51 51 H 1.08993 * 110.36865 * 278.06278 * 20 19 18 52 52 H 0.96998 * 119.99955 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6227 -0.3141 -2.4519 6 8 2.8052 -1.6386 -1.1217 7 6 2.0323 -0.7104 1.2304 8 8 2.6745 -1.7334 1.1203 9 7 1.7680 -0.2090 2.4532 10 6 0.8701 0.9435 2.6124 11 6 1.5920 2.0269 3.4197 12 6 2.0879 1.4295 4.7385 13 6 3.0805 0.3015 4.4482 14 6 2.3754 -0.8016 3.6526 15 1 1.5995 -1.2571 4.2680 16 6 3.3933 -1.8665 3.2393 17 1 2.9056 -2.6295 2.6326 18 6 4.5403 -1.2138 2.4394 19 6 5.7928 -1.9815 2.9386 20 6 5.4397 -2.2174 4.4284 21 7 3.9888 -2.4786 4.4380 22 6 3.3100 -3.1767 5.4008 23 1 2.2597 -3.3926 5.2718 24 6 3.9718 -3.6068 6.5427 25 7 5.2226 -3.2536 6.7509 26 14 3.0873 -4.6868 7.7840 27 1 1.7419 -5.0391 7.2636 28 1 3.8718 -5.9276 8.0082 29 1 2.9453 -3.9523 9.0667 30 1 -0.3633 0.5868 0.8438 31 1 -0.3633 0.4374 -0.9299 32 1 -0.3633 -1.0240 0.0862 33 1 3.1250 1.4443 -0.1046 34 1 1.5938 1.9856 -0.8330 35 1 1.7646 1.9252 0.9377 36 1 1.0043 0.4281 -2.5388 37 1 1.9457 -0.7716 -3.2438 38 1 -0.0302 0.6320 3.1422 39 1 0.6020 1.3362 1.6316 40 1 0.9031 2.8456 3.6273 41 1 2.4412 2.4015 2.8479 42 1 1.2411 1.0329 5.2986 43 1 2.5805 2.2046 5.3255 44 1 3.4509 -0.1080 5.3880 45 1 3.9159 0.6919 3.8671 46 1 4.6193 -0.1524 2.6748 47 1 4.3977 -1.3630 1.3692 48 1 6.6900 -1.3702 2.8418 49 1 5.9083 -2.9277 2.4098 50 1 5.9830 -3.0797 4.8150 51 1 5.6693 -1.3298 5.0178 52 1 5.6849 -3.5539 7.5490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025239652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:28 Heat of formation + Delta-G solvation = -22.590539 kcal Electronic energy + Delta-G solvation = -33275.484494 eV Core-core repulsion = 29276.572776 eV Total energy + Delta-G solvation = -3998.911717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.42988 -40.48125 -38.69317 -38.09672 -36.28966 -34.55000 -34.12282 -33.35367 -32.14751 -31.10325 -28.80499 -28.32222 -26.64501 -26.11771 -24.81818 -24.29480 -22.70660 -22.17736 -21.36565 -20.78852 -19.49881 -18.83905 -18.27487 -17.53217 -17.18339 -16.62194 -16.50045 -16.35783 -16.20963 -15.82855 -15.60359 -15.51600 -15.03412 -14.93535 -14.52790 -14.43656 -14.21513 -13.90734 -13.69852 -13.55038 -13.32689 -13.11069 -12.99030 -12.85600 -12.83994 -12.73031 -12.56464 -12.47366 -12.22911 -12.00297 -11.89787 -11.76971 -11.61551 -11.39069 -11.21495 -11.18315 -11.09393 -10.76978 -10.62865 -10.54313 -9.76245 -9.28039 -8.72444 -7.79342 -5.14407 1.42122 1.44496 1.54244 1.69136 1.82967 1.99804 2.50682 2.68146 3.31229 3.42020 3.76376 3.76876 3.92155 3.95341 3.95942 4.01860 4.14368 4.15575 4.21973 4.30693 4.36956 4.46618 4.51235 4.64361 4.68684 4.71176 4.77056 4.77985 4.83449 4.88625 4.92499 5.03347 5.06348 5.14652 5.20495 5.25265 5.27355 5.30041 5.32740 5.39788 5.48057 5.56164 5.63327 5.70215 5.78973 5.90454 5.99598 6.26544 6.53696 6.69350 7.13880 7.41605 7.54713 7.84769 8.52895 9.29565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.004310 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.324565 B = 6495.520973 C = 7129.978293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.153 4.153 4 C 0.518 3.482 5 N -0.832 5.832 6 O -0.561 6.561 7 C 0.494 3.506 8 O -0.522 6.522 9 N -0.599 5.599 10 C 0.075 3.925 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.153 3.847 15 H 0.040 0.960 16 C 0.164 3.836 17 H 0.041 0.959 18 C -0.105 4.105 19 C -0.142 4.142 20 C 0.181 3.819 21 N -0.612 5.612 22 C -0.225 4.225 23 H 0.069 0.931 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.972 3.028 27 H -0.271 1.271 28 H -0.295 1.295 29 H -0.287 1.287 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.042 0.958 51 H -0.004 1.004 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 19.801 -17.421 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C -0.210 4.210 4 C 0.301 3.699 5 N -0.398 5.398 6 O -0.438 6.438 7 C 0.282 3.718 8 O -0.397 6.397 9 N -0.334 5.334 10 C -0.046 4.046 11 C -0.165 4.165 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.047 3.953 15 H 0.058 0.942 16 C 0.058 3.942 17 H 0.058 0.942 18 C -0.143 4.143 19 C -0.181 4.181 20 C 0.056 3.944 21 N -0.338 5.338 22 C -0.355 4.355 23 H 0.087 0.913 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.801 3.199 27 H -0.196 1.196 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.014 0.986 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.340 18.574 -17.049 28.524 hybrid contribution 0.151 -1.291 0.986 1.631 sum -13.189 17.283 -16.063 27.031 Atomic orbital electron populations 1.22295 0.88194 1.03543 1.06805 1.20870 1.00461 0.98440 0.90449 1.22298 1.01686 0.90192 1.06808 1.20337 0.80451 0.82989 0.86094 1.43570 1.50823 1.38772 1.06641 1.90905 1.35874 1.30185 1.86806 1.20675 0.80611 0.85613 0.84926 1.90814 1.38481 1.24792 1.85662 1.48147 1.47566 1.33060 1.04652 1.22800 0.92355 0.85526 1.03896 1.21969 1.01459 0.97980 0.95097 1.21515 0.98274 0.96893 0.98676 1.21710 0.98427 0.95827 0.98929 1.21481 0.94506 0.93661 0.85638 0.94207 1.21572 0.93159 0.93325 0.86122 0.94174 1.22883 0.93468 0.97831 1.00088 1.22917 0.98257 0.99369 0.97538 1.21223 0.84913 0.97246 0.91024 1.44963 1.03813 1.61464 1.23533 1.19282 0.93553 1.25978 0.96659 0.91291 1.25523 0.97399 1.02970 0.99784 1.70170 1.11545 1.50230 1.27880 0.85095 0.77744 0.78105 0.78931 1.19576 1.22181 1.21416 0.87664 0.87063 0.93563 0.93380 0.86771 0.88015 0.74988 0.76143 0.90726 0.84326 0.87186 0.91002 0.92450 0.91218 0.94305 0.92362 0.91773 0.90045 0.90544 0.93829 0.93964 0.98626 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.05 71.98 0.58 -1.11 16 2 C -0.10 -1.84 0.61 -53.67 -0.03 -1.88 16 3 C -0.15 -1.76 8.06 71.99 0.58 -1.18 16 4 C 0.52 12.55 6.74 87.66 0.59 13.14 16 5 N -0.83 -9.82 8.69 -173.53 -1.51 -11.33 16 6 O -0.56 -21.77 15.06 20.36 0.31 -21.47 16 7 C 0.49 15.74 5.61 87.65 0.49 16.23 16 8 O -0.52 -22.99 7.50 20.34 0.15 -22.84 16 9 N -0.60 -17.41 2.93 -794.93 -2.33 -19.74 16 10 C 0.07 1.26 4.33 86.36 0.37 1.63 16 11 C -0.13 -2.00 5.72 30.67 0.18 -1.83 16 12 C -0.12 -2.91 5.88 30.62 0.18 -2.73 16 13 C -0.11 -4.05 4.96 30.67 0.15 -3.90 16 14 C 0.15 6.05 2.66 44.97 0.12 6.17 16 15 H 0.04 1.77 7.96 -2.38 -0.02 1.75 16 16 C 0.16 8.00 2.31 45.31 0.10 8.10 16 17 H 0.04 2.28 5.89 -7.21 -0.04 2.24 16 18 C -0.11 -4.70 4.89 31.78 0.16 -4.54 16 19 C -0.14 -6.72 7.09 31.98 0.23 -6.49 16 20 C 0.18 10.11 5.57 86.85 0.48 10.60 16 21 N -0.61 -34.70 2.57 -667.89 -1.72 -36.42 16 22 C -0.23 -13.58 9.82 84.03 0.83 -12.76 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.06 -3.86 5.46 84.86 0.46 -3.40 16 25 N -0.95 -59.88 10.36 21.65 0.22 -59.65 16 26 Si 0.97 48.53 29.56 68.60 2.03 50.55 16 27 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 28 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 30 H 0.11 0.75 4.84 -2.38 -0.01 0.74 16 31 H 0.11 0.30 7.14 -2.39 -0.02 0.28 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.31 8.08 -2.39 -0.02 0.29 16 35 H 0.10 0.93 3.75 -2.39 -0.01 0.92 16 36 H 0.42 1.15 7.81 -92.71 -0.72 0.43 16 37 H 0.41 4.48 8.93 -92.71 -0.83 3.66 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.14 1.27 2.47 -2.39 -0.01 1.26 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.10 7.48 -2.38 -0.02 1.09 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.79 7.85 -2.39 -0.02 1.78 16 45 H 0.06 2.14 5.73 -2.39 -0.01 2.12 16 46 H 0.06 2.62 5.48 -2.38 -0.01 2.61 16 47 H 0.08 3.83 5.57 -5.59 -0.03 3.80 16 48 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 50 H 0.04 2.64 6.46 -2.39 -0.02 2.62 16 51 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 52 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -90.86 370.59 1.99 -88.87 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.63 Total: 15.97 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 5.47 Total: 16.06 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.33 Total: -127.15 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: 0.46 Total: -44.30 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.55 kcal Total: -90.86 1.99 -88.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025239652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.279 kcal (2) G-P(sol) polarization free energy of solvation -90.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds