Wall clock time and date at job start Tue Mar 31 2020 19:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47387 * 2 1 4 4 C 1.50698 * 109.47036 * 239.99634 * 2 1 3 5 5 N 1.34777 * 119.99935 * 60.00055 * 4 2 1 6 6 O 1.21285 * 120.00325 * 240.00073 * 4 2 1 7 7 C 1.50702 * 109.46716 * 119.99760 * 2 1 3 8 8 O 1.21287 * 119.99849 * 110.56817 * 7 2 1 9 9 N 1.34774 * 120.00269 * 290.56385 * 7 2 1 10 10 C 1.46928 * 120.62849 * 7.40453 * 9 7 2 11 11 C 1.53193 * 108.77156 * 126.36958 * 10 9 7 12 12 C 1.53037 * 109.31412 * 54.63615 * 11 10 9 13 13 C 1.53073 * 109.65800 * 298.69241 * 12 11 10 14 14 C 1.46927 * 120.62943 * 187.38023 * 9 7 2 15 15 H 1.08995 * 109.58687 * 113.70526 * 14 9 7 16 16 C 1.52993 * 109.58744 * 353.41959 * 14 9 7 17 17 H 1.09003 * 109.87555 * 313.30847 * 16 14 9 18 18 C 1.54325 * 110.01496 * 74.40862 * 16 14 9 19 19 C 1.55159 * 102.94532 * 141.68105 * 18 16 14 20 20 C 1.55134 * 101.48171 * 324.33342 * 19 18 16 21 21 N 1.47025 * 109.88413 * 192.29439 * 16 14 9 22 22 C 1.36935 * 125.64953 * 61.44786 * 21 16 14 23 23 H 1.08006 * 119.99611 * 357.61738 * 22 21 16 24 24 C 1.38815 * 120.00380 * 177.61927 * 22 21 16 25 25 N 1.31615 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47228 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47313 * 299.99981 * 26 24 22 29 29 H 1.48500 * 109.46941 * 60.00109 * 26 24 22 30 30 H 1.09004 * 109.46817 * 304.46999 * 1 2 3 31 31 H 1.08994 * 109.46683 * 64.46669 * 1 2 3 32 32 H 1.08991 * 109.46979 * 184.46681 * 1 2 3 33 33 H 1.08996 * 109.47158 * 185.66791 * 3 2 1 34 34 H 1.09009 * 109.46590 * 305.66869 * 3 2 1 35 35 H 1.09000 * 109.47159 * 65.66663 * 3 2 1 36 36 H 0.97001 * 120.00057 * 0.02562 * 5 4 2 37 37 H 0.97003 * 120.00020 * 179.97438 * 5 4 2 38 38 H 1.08994 * 109.58217 * 246.15504 * 10 9 7 39 39 H 1.08997 * 109.58672 * 6.43912 * 10 9 7 40 40 H 1.08996 * 109.49305 * 174.58675 * 11 10 9 41 41 H 1.09000 * 109.49740 * 294.67569 * 11 10 9 42 42 H 1.08993 * 109.46238 * 58.65049 * 12 11 10 43 43 H 1.09004 * 109.45598 * 178.62695 * 12 11 10 44 44 H 1.09003 * 109.39185 * 301.28553 * 13 12 11 45 45 H 1.08999 * 109.62309 * 181.16949 * 13 12 11 46 46 H 1.09006 * 110.71732 * 260.04826 * 18 16 14 47 47 H 1.08998 * 110.71667 * 23.31903 * 18 16 14 48 48 H 1.09000 * 110.99962 * 82.57270 * 19 18 16 49 49 H 1.09000 * 111.00086 * 206.39035 * 19 18 16 50 50 H 1.08994 * 110.49862 * 278.44984 * 20 19 18 51 51 H 1.09005 * 110.33862 * 156.06344 * 20 19 18 52 52 H 0.97001 * 120.00280 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7068 -0.2501 -2.4545 6 8 2.7296 -1.6966 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.5823 -1.7864 1.1275 9 7 1.8704 -0.1500 2.4455 10 6 1.0671 1.0698 2.6062 11 6 0.0019 0.8208 3.6786 12 6 0.6801 0.3410 4.9639 13 6 1.4145 -0.9755 4.6980 14 6 2.4933 -0.7475 3.6345 15 1 3.2552 -0.0733 4.0257 16 6 3.1351 -2.0848 3.2600 17 1 2.4403 -2.6749 2.6624 18 6 4.4358 -1.8424 2.4655 19 6 5.3816 -2.9497 3.0009 20 6 4.9597 -3.0219 4.4920 21 7 3.4990 -2.8234 4.4781 22 6 2.6263 -3.2508 5.4429 23 1 1.5750 -3.0172 5.3618 24 6 3.0929 -3.9842 6.5252 25 7 4.3742 -4.2683 6.6243 26 14 1.9026 -4.5666 7.8417 27 1 2.6457 -5.3225 8.8817 28 1 1.2388 -3.3926 8.4634 29 1 0.8769 -5.4471 7.2271 30 1 -0.3633 0.5817 0.8473 31 1 -0.3632 0.4429 -0.9273 32 1 -0.3633 -1.0245 0.0800 33 1 3.1253 1.4441 -0.1015 34 1 1.5962 1.9847 -0.8350 35 1 1.7620 1.9262 0.9364 36 1 1.1494 0.5388 -2.5436 37 1 2.0304 -0.7072 -3.2465 38 1 1.7111 1.8932 2.9149 39 1 0.5855 1.3174 1.6603 40 1 -0.5386 1.7465 3.8762 41 1 -0.6954 0.0595 3.3290 42 1 1.3952 1.0920 5.2994 43 1 -0.0735 0.1865 5.7362 44 1 0.7036 -1.7208 4.3411 45 1 1.8799 -1.3274 5.6187 46 1 4.2633 -1.9661 1.3963 47 1 4.8399 -0.8531 2.6801 48 1 5.2001 -3.8973 2.4937 49 1 6.4257 -2.6514 2.9055 50 1 5.4446 -2.2313 5.0646 51 1 5.2059 -3.9986 4.9085 52 1 4.7004 -4.7805 7.3807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025239653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:33 Heat of formation + Delta-G solvation = 15.291494 kcal Electronic energy + Delta-G solvation = -33220.945299 eV Core-core repulsion = 29223.676270 eV Total energy + Delta-G solvation = -3997.269029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19226 -39.23443 -37.02351 -36.86216 -35.15774 -33.32124 -32.55871 -31.93537 -31.05738 -28.85387 -27.72870 -27.20748 -25.05586 -24.58632 -23.80318 -22.63370 -21.62494 -20.22963 -19.68109 -19.30925 -18.66022 -17.44076 -16.96457 -16.47324 -15.62716 -15.51058 -15.20120 -15.05181 -14.71607 -14.53418 -14.13491 -13.88323 -13.72331 -13.69725 -13.19826 -13.01532 -12.75789 -12.64800 -12.44200 -12.19436 -12.09763 -11.82973 -11.64798 -11.57715 -11.36068 -11.20484 -10.93025 -10.81646 -10.72296 -10.59753 -10.48485 -10.07661 -10.03325 -9.82796 -9.70458 -9.67562 -9.45514 -9.16728 -8.98389 -8.52869 -8.23517 -7.90994 -6.58382 -5.48258 -2.89535 2.64523 3.00699 3.10125 3.45606 3.50655 3.51860 3.59215 4.33526 4.49741 4.60529 4.75815 4.79066 4.88431 5.04007 5.16173 5.17718 5.30930 5.38036 5.45676 5.46554 5.55854 5.59166 5.65161 5.82186 5.84923 5.87200 5.94067 6.03145 6.07170 6.16726 6.22934 6.28498 6.35627 6.44609 6.66582 6.69431 6.70607 6.80741 6.86937 7.06263 7.13170 7.21489 7.23369 7.37440 7.70185 7.73026 7.82415 7.86249 8.08276 8.28103 8.56550 8.77108 9.38652 10.01872 10.70462 11.52519 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.004516 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.986278 B = 6198.150197 C = 7291.384082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.160 4.160 4 C 0.525 3.475 5 N -0.861 5.861 6 O -0.490 6.490 7 C 0.503 3.497 8 O -0.461 6.461 9 N -0.603 5.603 10 C 0.088 3.912 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.134 4.134 14 C 0.141 3.859 15 H 0.057 0.943 16 C 0.167 3.833 17 H 0.071 0.929 18 C -0.122 4.122 19 C -0.147 4.147 20 C 0.148 3.852 21 N -0.598 5.598 22 C -0.219 4.219 23 H 0.087 0.913 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.286 1.286 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.037 0.963 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.003 0.997 51 H 0.108 0.892 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 16.764 -14.862 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.217 4.217 4 C 0.307 3.693 5 N -0.427 5.427 6 O -0.361 6.361 7 C 0.288 3.712 8 O -0.333 6.333 9 N -0.339 5.339 10 C -0.035 4.035 11 C -0.173 4.173 12 C -0.161 4.161 13 C -0.171 4.171 14 C 0.037 3.963 15 H 0.075 0.925 16 C 0.060 3.940 17 H 0.089 0.911 18 C -0.159 4.159 19 C -0.186 4.186 20 C 0.023 3.977 21 N -0.322 5.322 22 C -0.348 4.348 23 H 0.105 0.895 24 C -0.210 4.210 25 N -0.568 5.568 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.214 1.214 29 H -0.213 1.213 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.224 0.776 37 H 0.231 0.769 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.115 0.885 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.021 0.979 51 H 0.125 0.875 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.468 15.348 -14.416 22.696 hybrid contribution -0.824 0.322 0.418 0.979 sum -9.293 15.670 -13.998 22.975 Atomic orbital electron populations 1.22082 0.91090 1.04000 1.03322 1.20900 0.98446 0.97556 0.94301 1.22308 1.02463 0.92581 1.04351 1.19933 0.80512 0.84500 0.84375 1.43839 1.56923 1.34002 1.07891 1.90916 1.35059 1.24295 1.85819 1.19699 0.81208 0.86867 0.83413 1.90840 1.38227 1.19453 1.84737 1.48123 1.51534 1.27092 1.07168 1.22286 0.93518 0.87716 1.00021 1.21946 0.97745 1.01125 0.96490 1.21621 0.99403 0.98789 0.96238 1.22515 0.97429 0.95274 1.01918 1.22214 0.93719 0.96787 0.83546 0.92471 1.21540 0.95398 0.89589 0.87503 0.91118 1.23042 0.94926 0.96687 1.01273 1.23016 0.97047 0.98289 1.00229 1.22038 0.83323 1.02567 0.89801 1.44782 1.03347 1.62716 1.21362 1.19333 0.90344 1.26218 0.98872 0.89498 1.24800 0.96027 1.01013 0.99120 1.69783 1.11781 1.44322 1.30923 0.86283 0.79947 0.78543 0.81572 1.21745 1.21355 1.21327 0.89875 0.91389 0.91246 0.91549 0.91472 0.89167 0.77622 0.76860 0.91909 0.88451 0.91606 0.91734 0.92492 0.92314 0.92335 0.86631 0.88522 0.94437 0.92574 0.93485 0.97918 0.87461 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.16 37.16 0.30 -0.92 16 2 C -0.10 -1.17 0.59 -156.81 -0.09 -1.27 16 3 C -0.16 -1.28 7.93 37.16 0.29 -0.99 16 4 C 0.52 6.77 6.74 -10.99 -0.07 6.70 16 5 N -0.86 -6.53 8.64 31.22 0.27 -6.26 16 6 O -0.49 -9.22 15.07 -18.87 -0.28 -9.50 16 7 C 0.50 8.14 6.05 -10.99 -0.07 8.08 16 8 O -0.46 -9.63 6.98 -18.87 -0.13 -9.76 16 9 N -0.60 -9.13 2.95 -165.22 -0.49 -9.62 16 10 C 0.09 0.93 4.05 -3.71 -0.02 0.91 16 11 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 12 C -0.12 -1.73 5.88 -26.67 -0.16 -1.89 16 13 C -0.13 -2.50 3.64 -26.59 -0.10 -2.60 16 14 C 0.14 2.70 2.66 -67.60 -0.18 2.52 16 15 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 16 C 0.17 3.84 2.30 -66.95 -0.15 3.69 16 17 H 0.07 1.83 5.94 -51.61 -0.31 1.53 16 18 C -0.12 -2.69 5.33 -24.89 -0.13 -2.83 16 19 C -0.15 -3.40 7.10 -24.46 -0.17 -3.57 16 20 C 0.15 3.91 6.00 -2.41 -0.01 3.90 16 21 N -0.60 -15.82 3.10 -162.43 -0.50 -16.33 16 22 C -0.22 -6.04 7.68 -15.06 -0.12 -6.16 16 23 H 0.09 2.28 5.11 -52.48 -0.27 2.01 16 24 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 25 N -0.92 -27.47 10.05 55.49 0.56 -26.91 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 H 0.08 0.59 5.18 -51.93 -0.27 0.32 16 31 H 0.07 0.35 7.44 -51.93 -0.39 -0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.32 7.73 -51.92 -0.40 -0.08 16 35 H 0.09 0.65 4.16 -51.93 -0.22 0.44 16 36 H 0.40 1.63 7.72 -40.82 -0.32 1.31 16 37 H 0.40 2.73 8.93 -40.82 -0.36 2.36 16 38 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 39 H 0.10 0.77 2.55 -51.93 -0.13 0.63 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 45 H 0.12 2.57 5.41 -51.93 -0.28 2.29 16 46 H 0.10 2.24 5.44 -53.15 -0.29 1.95 16 47 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 48 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 51 H 0.11 3.16 5.70 -51.93 -0.30 2.86 16 52 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -35.56 367.01 -9.07 -44.63 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.06 Total: 7.47 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.93 Total: 3.44 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.16 Total: -59.11 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.42 Total: -19.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.56 -9.07 -44.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025239653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.922 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds