Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47387 * 2 1 4 4 C 1.50698 * 109.47036 * 239.99634 * 2 1 3 5 5 N 1.34777 * 119.99935 * 60.00055 * 4 2 1 6 6 O 1.21285 * 120.00325 * 240.00073 * 4 2 1 7 7 C 1.50702 * 109.46716 * 119.99760 * 2 1 3 8 8 O 1.21287 * 119.99849 * 110.56817 * 7 2 1 9 9 N 1.34774 * 120.00269 * 290.56385 * 7 2 1 10 10 C 1.46928 * 120.62849 * 7.40453 * 9 7 2 11 11 C 1.53193 * 108.77156 * 126.36958 * 10 9 7 12 12 C 1.53037 * 109.31412 * 54.63615 * 11 10 9 13 13 C 1.53073 * 109.65800 * 298.69241 * 12 11 10 14 14 C 1.46927 * 120.62943 * 187.38023 * 9 7 2 15 15 H 1.08995 * 109.58687 * 113.70526 * 14 9 7 16 16 C 1.52993 * 109.58744 * 353.41959 * 14 9 7 17 17 H 1.09003 * 109.87555 * 313.30847 * 16 14 9 18 18 C 1.54325 * 110.01496 * 74.40862 * 16 14 9 19 19 C 1.55159 * 102.94532 * 141.68105 * 18 16 14 20 20 C 1.55134 * 101.48171 * 324.33342 * 19 18 16 21 21 N 1.47025 * 109.88413 * 192.29439 * 16 14 9 22 22 C 1.36935 * 125.64953 * 61.44786 * 21 16 14 23 23 H 1.08006 * 119.99611 * 357.61738 * 22 21 16 24 24 C 1.38815 * 120.00380 * 177.61927 * 22 21 16 25 25 N 1.31615 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47228 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47313 * 299.99981 * 26 24 22 29 29 H 1.48500 * 109.46941 * 60.00109 * 26 24 22 30 30 H 1.09004 * 109.46817 * 304.46999 * 1 2 3 31 31 H 1.08994 * 109.46683 * 64.46669 * 1 2 3 32 32 H 1.08991 * 109.46979 * 184.46681 * 1 2 3 33 33 H 1.08996 * 109.47158 * 185.66791 * 3 2 1 34 34 H 1.09009 * 109.46590 * 305.66869 * 3 2 1 35 35 H 1.09000 * 109.47159 * 65.66663 * 3 2 1 36 36 H 0.97001 * 120.00057 * 0.02562 * 5 4 2 37 37 H 0.97003 * 120.00020 * 179.97438 * 5 4 2 38 38 H 1.08994 * 109.58217 * 246.15504 * 10 9 7 39 39 H 1.08997 * 109.58672 * 6.43912 * 10 9 7 40 40 H 1.08996 * 109.49305 * 174.58675 * 11 10 9 41 41 H 1.09000 * 109.49740 * 294.67569 * 11 10 9 42 42 H 1.08993 * 109.46238 * 58.65049 * 12 11 10 43 43 H 1.09004 * 109.45598 * 178.62695 * 12 11 10 44 44 H 1.09003 * 109.39185 * 301.28553 * 13 12 11 45 45 H 1.08999 * 109.62309 * 181.16949 * 13 12 11 46 46 H 1.09006 * 110.71732 * 260.04826 * 18 16 14 47 47 H 1.08998 * 110.71667 * 23.31903 * 18 16 14 48 48 H 1.09000 * 110.99962 * 82.57270 * 19 18 16 49 49 H 1.09000 * 111.00086 * 206.39035 * 19 18 16 50 50 H 1.08994 * 110.49862 * 278.44984 * 20 19 18 51 51 H 1.09005 * 110.33862 * 156.06344 * 20 19 18 52 52 H 0.97001 * 120.00280 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7068 -0.2501 -2.4545 6 8 2.7296 -1.6966 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.5823 -1.7864 1.1275 9 7 1.8704 -0.1500 2.4455 10 6 1.0671 1.0698 2.6062 11 6 0.0019 0.8208 3.6786 12 6 0.6801 0.3410 4.9639 13 6 1.4145 -0.9755 4.6980 14 6 2.4933 -0.7475 3.6345 15 1 3.2552 -0.0733 4.0257 16 6 3.1351 -2.0848 3.2600 17 1 2.4403 -2.6749 2.6624 18 6 4.4358 -1.8424 2.4655 19 6 5.3816 -2.9497 3.0009 20 6 4.9597 -3.0219 4.4920 21 7 3.4990 -2.8234 4.4781 22 6 2.6263 -3.2508 5.4429 23 1 1.5750 -3.0172 5.3618 24 6 3.0929 -3.9842 6.5252 25 7 4.3742 -4.2683 6.6243 26 14 1.9026 -4.5666 7.8417 27 1 2.6457 -5.3225 8.8817 28 1 1.2388 -3.3926 8.4634 29 1 0.8769 -5.4471 7.2271 30 1 -0.3633 0.5817 0.8473 31 1 -0.3632 0.4429 -0.9273 32 1 -0.3633 -1.0245 0.0800 33 1 3.1253 1.4441 -0.1015 34 1 1.5962 1.9847 -0.8350 35 1 1.7620 1.9262 0.9364 36 1 1.1494 0.5388 -2.5436 37 1 2.0304 -0.7072 -3.2465 38 1 1.7111 1.8932 2.9149 39 1 0.5855 1.3174 1.6603 40 1 -0.5386 1.7465 3.8762 41 1 -0.6954 0.0595 3.3290 42 1 1.3952 1.0920 5.2994 43 1 -0.0735 0.1865 5.7362 44 1 0.7036 -1.7208 4.3411 45 1 1.8799 -1.3274 5.6187 46 1 4.2633 -1.9661 1.3963 47 1 4.8399 -0.8531 2.6801 48 1 5.2001 -3.8973 2.4937 49 1 6.4257 -2.6514 2.9055 50 1 5.4446 -2.2313 5.0646 51 1 5.2059 -3.9986 4.9085 52 1 4.7004 -4.7805 7.3807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025239653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = -11.204562 kcal Electronic energy + Delta-G solvation = -33222.094254 eV Core-core repulsion = 29223.676270 eV Total energy + Delta-G solvation = -3998.417984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36318 -40.45313 -38.70039 -38.10839 -36.29392 -34.53285 -34.25218 -33.24350 -32.47030 -30.82133 -28.80330 -28.34939 -26.66756 -26.26740 -24.80903 -23.99286 -22.84649 -21.85149 -21.29570 -20.88559 -19.86599 -18.88708 -18.26849 -17.57257 -17.29655 -16.75093 -16.46748 -16.23581 -15.87649 -15.77781 -15.66838 -15.56076 -14.96934 -14.77483 -14.44444 -14.28244 -14.08822 -13.82039 -13.72275 -13.59902 -13.36714 -13.16529 -13.01592 -12.93668 -12.91231 -12.77555 -12.62526 -12.25961 -12.22729 -12.05448 -12.00464 -11.78199 -11.59146 -11.34164 -11.25878 -10.92127 -10.84802 -10.72371 -10.60066 -10.54641 -9.73764 -9.25962 -8.69833 -7.66121 -5.10317 1.44595 1.48569 1.54330 1.68522 1.84952 1.98920 2.53637 2.68954 3.31975 3.45410 3.76899 3.78432 3.90677 3.97288 4.00496 4.08189 4.15437 4.17706 4.24679 4.30332 4.40712 4.48721 4.50805 4.65740 4.69599 4.70539 4.76016 4.79866 4.87354 4.89549 4.94511 5.01557 5.09483 5.14699 5.17214 5.25941 5.27332 5.29836 5.37480 5.47456 5.55433 5.58221 5.68026 5.73603 5.88430 5.94806 5.99059 6.38125 6.53171 6.69670 7.18236 7.43265 7.55822 7.89098 8.56255 9.34353 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.004516 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.986278 B = 6198.150197 C = 7291.384082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.157 4.157 4 C 0.519 3.481 5 N -0.832 5.832 6 O -0.562 6.562 7 C 0.490 3.510 8 O -0.518 6.518 9 N -0.601 5.601 10 C 0.080 3.920 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.126 4.126 14 C 0.153 3.847 15 H 0.049 0.951 16 C 0.169 3.831 17 H 0.040 0.960 18 C -0.105 4.105 19 C -0.139 4.139 20 C 0.153 3.847 21 N -0.615 5.615 22 C -0.218 4.218 23 H 0.095 0.905 24 C -0.076 4.076 25 N -0.953 5.953 26 Si 0.971 3.029 27 H -0.297 1.297 28 H -0.272 1.272 29 H -0.283 1.283 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.043 0.957 49 H 0.072 0.928 50 H -0.015 1.015 51 H 0.076 0.924 52 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.299 21.106 -16.602 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.214 4.214 4 C 0.302 3.698 5 N -0.398 5.398 6 O -0.438 6.438 7 C 0.277 3.723 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.041 4.041 11 C -0.167 4.167 12 C -0.156 4.156 13 C -0.164 4.164 14 C 0.047 3.953 15 H 0.067 0.933 16 C 0.063 3.937 17 H 0.058 0.942 18 C -0.143 4.143 19 C -0.178 4.178 20 C 0.028 3.972 21 N -0.340 5.340 22 C -0.347 4.347 23 H 0.112 0.888 24 C -0.267 4.267 25 N -0.604 5.604 26 Si 0.800 3.200 27 H -0.223 1.223 28 H -0.198 1.198 29 H -0.210 1.210 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.091 0.909 50 H 0.003 0.997 51 H 0.094 0.906 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.584 19.805 -16.223 28.100 hybrid contribution 0.078 -0.997 0.836 1.303 sum -11.506 18.808 -15.387 26.887 Atomic orbital electron populations 1.22166 0.88333 1.03246 1.06484 1.20870 1.00307 0.98512 0.90547 1.22392 1.01655 0.90251 1.07094 1.20340 0.79661 0.83726 0.86108 1.43567 1.55707 1.34073 1.06440 1.90902 1.38505 1.27517 1.86913 1.20722 0.80162 0.86453 0.84922 1.90808 1.40839 1.22061 1.85626 1.48116 1.51567 1.28290 1.05598 1.22742 0.93414 0.85859 1.02069 1.21950 0.97549 1.02850 0.94308 1.21576 0.99429 0.95972 0.98625 1.22229 0.96927 0.97677 0.99558 1.21603 0.93837 0.94437 0.85375 0.93305 1.21466 0.95455 0.91092 0.85644 0.94248 1.22897 0.94069 0.96493 1.00830 1.22919 0.98839 0.98358 0.97646 1.21794 0.83826 1.00108 0.91507 1.45050 1.03232 1.63696 1.22024 1.19700 0.90943 1.25165 0.98862 0.88779 1.25615 0.97661 1.01901 1.01549 1.70036 1.13516 1.45552 1.31319 0.85244 0.77827 0.78218 0.78728 1.22339 1.19763 1.20966 0.87968 0.87089 0.93866 0.93325 0.86930 0.87775 0.75002 0.76136 0.89902 0.84773 0.87323 0.92199 0.91773 0.91689 0.94494 0.90761 0.89041 0.93468 0.93846 0.90936 0.99667 0.90601 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.16 71.98 0.59 -1.20 16 2 C -0.10 -1.87 0.59 -53.67 -0.03 -1.90 16 3 C -0.16 -1.75 7.93 71.98 0.57 -1.18 16 4 C 0.52 12.65 6.74 87.66 0.59 13.24 16 5 N -0.83 -9.99 8.64 -173.53 -1.50 -11.49 16 6 O -0.56 -21.82 15.07 20.30 0.31 -21.51 16 7 C 0.49 15.66 6.05 87.66 0.53 16.19 16 8 O -0.52 -22.69 6.98 20.30 0.14 -22.55 16 9 N -0.60 -17.41 2.95 -795.03 -2.35 -19.76 16 10 C 0.08 1.34 4.05 86.36 0.35 1.69 16 11 C -0.13 -2.25 6.08 30.67 0.19 -2.06 16 12 C -0.12 -3.08 5.88 30.63 0.18 -2.90 16 13 C -0.13 -4.79 3.64 30.68 0.11 -4.68 16 14 C 0.15 5.95 2.66 44.97 0.12 6.06 16 15 H 0.05 1.98 7.84 -2.39 -0.02 1.97 16 16 C 0.17 8.22 2.30 45.34 0.10 8.32 16 17 H 0.04 2.20 5.94 -5.03 -0.03 2.17 16 18 C -0.11 -4.87 5.33 31.78 0.17 -4.70 16 19 C -0.14 -6.74 7.10 32.07 0.23 -6.52 16 20 C 0.15 8.64 6.00 86.93 0.52 9.16 16 21 N -0.61 -34.53 3.10 -667.82 -2.07 -36.60 16 22 C -0.22 -12.62 7.68 84.03 0.65 -11.98 16 23 H 0.09 5.18 5.11 -2.91 -0.01 5.16 16 24 C -0.08 -4.50 5.49 84.86 0.47 -4.03 16 25 N -0.95 -60.10 10.05 21.65 0.22 -59.88 16 26 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 27 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 30 H 0.10 0.86 5.18 -2.39 -0.01 0.84 16 31 H 0.11 0.43 7.44 -2.39 -0.02 0.41 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.28 7.73 -2.38 -0.02 0.26 16 35 H 0.10 0.89 4.16 -2.39 -0.01 0.88 16 36 H 0.42 1.26 7.72 -92.71 -0.72 0.54 16 37 H 0.41 4.55 8.93 -92.71 -0.83 3.72 16 38 H 0.08 1.17 7.91 -2.39 -0.02 1.15 16 39 H 0.14 1.29 2.55 -2.39 -0.01 1.28 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.04 1.52 7.35 -2.39 -0.02 1.51 16 45 H 0.07 3.44 5.41 -2.39 -0.01 3.43 16 46 H 0.09 4.46 5.44 -29.32 -0.16 4.30 16 47 H 0.05 2.03 7.66 -2.39 -0.02 2.02 16 48 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 50 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 51 H 0.08 4.80 5.70 -2.38 -0.01 4.78 16 52 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -88.91 367.01 1.36 -87.54 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.74 Total: 21.12 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.33 Total: 13.52 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.70 Total: -127.73 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: 0.45 Total: -44.06 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -88.91 1.36 -87.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025239653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.336 kcal (2) G-P(sol) polarization free energy of solvation -88.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds