Wall clock time and date at job start Tue Mar 31 2020 19:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 C 1.50705 * 109.47366 * 239.99628 * 2 1 3 5 5 N 1.34770 * 119.99698 * 59.99589 * 4 2 1 6 6 O 1.21281 * 120.00117 * 240.00341 * 4 2 1 7 7 C 1.50704 * 109.47018 * 119.99909 * 2 1 3 8 8 O 1.21275 * 120.00034 * 119.00351 * 7 2 1 9 9 N 1.34774 * 119.99934 * 298.99656 * 7 2 1 10 10 C 1.46927 * 120.62993 * 4.80378 * 9 7 2 11 11 C 1.53193 * 108.77756 * 233.62587 * 10 9 7 12 12 C 1.53045 * 109.31297 * 305.36983 * 11 10 9 13 13 C 1.53039 * 109.54153 * 61.35764 * 12 11 10 14 14 C 1.46922 * 120.63364 * 184.82150 * 9 7 2 15 15 H 1.08997 * 109.70774 * 246.23392 * 14 9 7 16 16 C 1.53007 * 109.58430 * 6.58635 * 14 9 7 17 17 H 1.08994 * 109.87076 * 314.27817 * 16 14 9 18 18 C 1.54323 * 109.87967 * 193.26245 * 16 14 9 19 19 C 1.55160 * 102.94158 * 218.38663 * 18 16 14 20 20 C 1.54913 * 101.61485 * 35.48449 * 19 18 16 21 21 N 1.47022 * 109.87946 * 75.45430 * 16 14 9 22 22 C 1.36938 * 125.65077 * 298.41160 * 21 16 14 23 23 H 1.07993 * 119.99660 * 6.25700 * 22 21 16 24 24 C 1.38816 * 119.99886 * 186.26053 * 22 21 16 25 25 N 1.31617 * 119.99693 * 0.05161 * 24 22 21 26 26 Si 1.86795 * 119.99809 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47079 * 2.82402 * 26 24 22 28 28 H 1.48497 * 109.47487 * 122.82685 * 26 24 22 29 29 H 1.48495 * 109.46989 * 242.82902 * 26 24 22 30 30 H 1.09000 * 109.47296 * 294.40009 * 1 2 3 31 31 H 1.09001 * 109.47290 * 54.40257 * 1 2 3 32 32 H 1.09004 * 109.46993 * 174.40256 * 1 2 3 33 33 H 1.08996 * 109.47219 * 183.21237 * 3 2 1 34 34 H 1.09004 * 109.46726 * 303.20451 * 3 2 1 35 35 H 1.08998 * 109.47531 * 63.20476 * 3 2 1 36 36 H 0.97006 * 120.00235 * 0.02562 * 5 4 2 37 37 H 0.97003 * 119.99801 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.58757 * 113.83879 * 10 9 7 39 39 H 1.08999 * 109.70723 * 353.48540 * 10 9 7 40 40 H 1.08992 * 109.49956 * 185.41080 * 11 10 9 41 41 H 1.09006 * 109.52174 * 65.32940 * 11 10 9 42 42 H 1.09006 * 109.45535 * 301.34126 * 12 11 10 43 43 H 1.08994 * 109.45711 * 181.38716 * 12 11 10 44 44 H 1.08996 * 109.49819 * 178.68544 * 13 12 11 45 45 H 1.09003 * 109.51691 * 58.60722 * 13 12 11 46 46 H 1.09003 * 110.71886 * 100.02807 * 18 16 14 47 47 H 1.08997 * 110.72177 * 336.75296 * 18 16 14 48 48 H 1.09004 * 111.00298 * 153.57600 * 19 18 16 49 49 H 1.08993 * 111.00866 * 277.39715 * 19 18 16 50 50 H 1.09000 * 110.36611 * 81.84638 * 20 19 18 51 51 H 1.09000 * 110.36900 * 204.17018 * 20 19 18 52 52 H 0.97007 * 119.99456 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7067 -0.2501 -2.4545 6 8 2.7296 -1.6966 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.7145 -1.7069 1.1194 9 7 1.7234 -0.2382 2.4545 10 6 0.8130 0.9047 2.6081 11 6 1.5030 1.9735 3.4616 12 6 1.9579 1.3500 4.7832 13 6 2.9645 0.2321 4.5021 14 6 2.2910 -0.8563 3.6605 15 1 1.4974 -1.3278 4.2401 16 6 3.3268 -1.9084 3.2586 17 1 2.9308 -2.5305 2.4560 18 6 3.6825 -2.7866 4.4767 19 6 5.2082 -3.0131 4.3081 20 6 5.6619 -1.6545 3.7180 21 7 4.5651 -1.2486 2.8196 22 6 4.6811 -0.3976 1.7531 23 1 3.7992 -0.0819 1.2157 24 6 5.9325 0.0593 1.3626 25 7 7.0074 -0.3263 2.0169 26 14 6.0907 1.2207 -0.0918 27 1 4.7390 1.5530 -0.6092 28 1 6.7749 2.4656 0.3409 29 1 6.8838 0.5668 -1.1634 30 1 -0.3634 0.4245 0.9359 31 1 -0.3634 0.5982 -0.8356 32 1 -0.3633 -1.0228 -0.1002 33 1 3.1284 1.4430 -0.0576 34 1 1.6305 1.9726 -0.8599 35 1 1.7244 1.9395 0.9173 36 1 1.1493 0.5387 -2.5436 37 1 2.0304 -0.7072 -3.2465 38 1 -0.1028 0.5787 3.1011 39 1 0.5734 1.3180 1.6284 40 1 0.8040 2.7849 3.6636 41 1 2.3688 2.3639 2.9266 42 1 1.0948 0.9384 5.3065 43 1 2.4273 2.1142 5.4026 44 1 3.3056 -0.1958 5.4448 45 1 3.8169 0.6380 3.9573 46 1 3.1455 -3.7344 4.4388 47 1 3.4714 -2.2595 5.4071 48 1 5.6843 -3.1995 5.2708 49 1 5.4077 -3.8275 3.6118 50 1 5.7920 -0.9202 4.5129 51 1 6.5882 -1.7752 3.1564 52 1 7.8818 -0.0068 1.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025239654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:36 Heat of formation + Delta-G solvation = 28.392611 kcal Electronic energy + Delta-G solvation = -34555.975749 eV Core-core repulsion = 30559.274827 eV Total energy + Delta-G solvation = -3996.700922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04434 -38.96306 -36.87234 -36.58913 -34.82683 -32.96643 -32.32902 -31.90395 -30.62555 -28.88600 -27.46114 -27.21130 -25.01730 -24.16648 -23.50295 -22.80058 -21.33413 -20.00173 -19.64570 -19.41273 -18.22338 -17.15100 -16.68977 -16.35001 -15.70600 -15.28482 -14.94087 -14.62672 -14.56104 -14.27117 -14.09619 -13.73871 -13.59059 -13.47500 -13.11578 -12.83570 -12.75559 -12.33625 -12.22272 -11.97628 -11.80536 -11.76970 -11.56005 -11.54666 -11.19879 -11.01897 -10.85712 -10.72425 -10.65027 -10.39231 -10.28430 -9.99905 -9.93937 -9.73351 -9.60841 -9.41648 -9.32271 -9.25926 -8.85658 -8.38833 -7.86686 -7.60973 -6.35158 -5.30043 -2.69336 3.05311 3.33983 3.42471 3.48155 3.52754 3.58327 3.91551 4.63551 4.71208 4.83963 5.00664 5.07420 5.19774 5.20548 5.32736 5.46844 5.52464 5.58811 5.65602 5.70482 5.71099 5.77045 5.78434 5.83759 5.91049 5.94438 6.03546 6.10661 6.15902 6.20024 6.25857 6.34430 6.44730 6.49829 6.50982 6.61006 6.67085 6.82407 6.92385 7.00786 7.06532 7.19256 7.36726 7.57837 7.70145 7.78335 7.99495 8.15646 8.18776 8.68110 8.72632 9.16457 9.56117 10.18773 10.84557 11.70927 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.007761 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.001284 B = 3606.884979 C = 4608.707595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.170 4.170 4 C 0.522 3.478 5 N -0.864 5.864 6 O -0.479 6.479 7 C 0.527 3.473 8 O -0.443 6.443 9 N -0.602 5.602 10 C 0.087 3.913 11 C -0.136 4.136 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.145 3.855 15 H 0.050 0.950 16 C 0.121 3.879 17 H 0.112 0.888 18 C -0.131 4.131 19 C -0.142 4.142 20 C 0.140 3.860 21 N -0.575 5.575 22 C -0.170 4.170 23 H 0.089 0.911 24 C -0.031 4.031 25 N -0.930 5.930 26 Si 0.893 3.107 27 H -0.275 1.275 28 H -0.299 1.299 29 H -0.297 1.297 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.393 0.607 37 H 0.398 0.602 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.001 0.999 51 H 0.116 0.884 52 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.025 5.217 -0.324 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.227 4.227 4 C 0.304 3.696 5 N -0.430 5.430 6 O -0.348 6.348 7 C 0.313 3.687 8 O -0.313 6.313 9 N -0.338 5.338 10 C -0.036 4.036 11 C -0.174 4.174 12 C -0.153 4.153 13 C -0.164 4.164 14 C 0.040 3.960 15 H 0.068 0.932 16 C 0.014 3.986 17 H 0.129 0.871 18 C -0.170 4.170 19 C -0.181 4.181 20 C 0.016 3.984 21 N -0.297 5.297 22 C -0.299 4.299 23 H 0.107 0.893 24 C -0.223 4.223 25 N -0.583 5.583 26 Si 0.727 3.273 27 H -0.202 1.202 28 H -0.227 1.227 29 H -0.225 1.225 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.221 0.779 37 H 0.229 0.771 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.019 0.981 51 H 0.133 0.867 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.008 4.088 -0.244 16.523 hybrid contribution -0.008 1.208 -1.005 1.571 sum -16.016 5.296 -1.249 16.914 Atomic orbital electron populations 1.22226 0.91803 1.03256 1.03824 1.20921 0.97684 0.97965 0.94764 1.22493 1.04981 0.92061 1.03117 1.19916 0.80578 0.84826 0.84311 1.43837 1.57195 1.34067 1.07932 1.90940 1.33864 1.24394 1.85592 1.19322 0.80509 0.85650 0.83256 1.90788 1.33266 1.23806 1.83435 1.47784 1.47595 1.32624 1.05777 1.22257 0.92466 0.87722 1.01200 1.21941 1.00869 0.97368 0.97257 1.21503 0.99012 0.98562 0.96270 1.21919 0.99459 0.95435 0.99602 1.21989 0.95164 0.94455 0.84343 0.93216 1.22399 0.88509 0.92664 0.95021 0.87138 1.22689 0.97361 0.98691 0.98257 1.22941 0.94818 1.01228 0.99129 1.22157 0.95596 0.88641 0.92049 1.44325 1.02657 1.52154 1.30606 1.19563 0.92617 1.14650 1.03049 0.89329 1.24723 0.95872 1.02270 0.99476 1.69657 0.97188 1.49578 1.41876 0.86368 0.77044 0.80257 0.83582 1.20178 1.22726 1.22511 0.89707 0.91533 0.91740 0.89364 0.91989 0.89796 0.77897 0.77096 0.92359 0.88200 0.91856 0.90975 0.93076 0.92601 0.92395 0.88282 0.93000 0.92916 0.93305 0.92575 0.98109 0.86704 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.96 37.16 0.30 -1.35 16 2 C -0.11 -1.65 0.56 -156.81 -0.09 -1.74 16 3 C -0.17 -2.45 7.75 37.16 0.29 -2.16 16 4 C 0.52 9.25 6.74 -10.99 -0.07 9.17 16 5 N -0.86 -10.48 8.68 31.22 0.27 -10.20 16 6 O -0.48 -11.35 15.02 -18.96 -0.28 -11.63 16 7 C 0.53 10.32 3.60 -10.98 -0.04 10.28 16 8 O -0.44 -10.87 7.76 -18.95 -0.15 -11.02 16 9 N -0.60 -10.25 2.81 -165.22 -0.46 -10.71 16 10 C 0.09 1.08 4.05 -3.71 -0.02 1.07 16 11 C -0.14 -1.72 5.75 -26.61 -0.15 -1.87 16 12 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16 13 C -0.13 -2.26 4.94 -26.61 -0.13 -2.39 16 14 C 0.15 2.67 2.52 -67.60 -0.17 2.50 16 15 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 16 C 0.12 2.67 2.32 -66.95 -0.16 2.51 16 17 H 0.11 2.78 4.90 -56.90 -0.28 2.50 16 18 C -0.13 -2.55 6.33 -24.90 -0.16 -2.71 16 19 C -0.14 -3.04 7.08 -24.58 -0.17 -3.22 16 20 C 0.14 3.61 6.14 -2.50 -0.02 3.59 16 21 N -0.58 -14.84 1.92 -162.53 -0.31 -15.15 16 22 C -0.17 -4.71 7.37 -15.06 -0.11 -4.82 16 23 H 0.09 2.32 2.51 -52.49 -0.13 2.19 16 24 C -0.03 -0.91 5.48 -17.43 -0.10 -1.01 16 25 N -0.93 -28.56 10.02 55.49 0.56 -28.01 16 26 Si 0.89 23.19 29.26 -169.99 -4.97 18.22 16 27 H -0.28 -6.48 4.69 56.52 0.26 -6.22 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 30 H 0.08 0.79 4.61 -51.93 -0.24 0.55 16 31 H 0.07 0.51 7.73 -51.93 -0.40 0.10 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.68 4.48 -51.93 -0.23 1.45 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.08 1.08 4.07 -51.93 -0.21 0.87 16 36 H 0.39 3.29 7.83 -40.82 -0.32 2.97 16 37 H 0.40 4.43 8.93 -40.82 -0.36 4.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.07 2.62 -51.93 -0.14 0.93 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.03 7.09 -51.93 -0.37 0.66 16 45 H 0.10 2.23 6.39 -51.93 -0.33 1.90 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.94 6.76 -51.93 -0.35 0.59 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 51 H 0.12 3.39 5.50 -51.93 -0.29 3.11 16 52 H 0.24 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -36.58 357.21 -8.87 -45.45 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.94 Total: 11.59 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.95 Total: 6.08 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.05 Total: -64.08 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.43 Total: -22.65 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.97 Total: 18.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.58 -8.87 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025239654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.844 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds