Wall clock time and date at job start Tue Mar 31 2020 19:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47420 * 2 1 4 4 H 1.09008 * 109.87402 * 55.52216 * 3 2 1 5 5 C 1.54329 * 109.88198 * 294.51021 * 3 2 1 6 6 C 1.55161 * 103.10208 * 218.14552 * 5 3 2 7 7 C 1.55389 * 101.36540 * 35.49375 * 6 5 3 8 8 N 1.47022 * 110.01268 * 176.62364 * 3 2 1 9 9 C 1.34767 * 125.64747 * 298.46441 * 8 3 2 10 10 O 1.21352 * 120.00201 * 4.60834 * 9 8 3 11 11 C 1.49451 * 120.00217 * 184.61228 * 9 8 3 12 12 O 1.21351 * 119.99724 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00447 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00070 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47027 * 274.99584 * 14 13 11 16 16 C 1.53003 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46918 * 60.00181 * 16 15 14 18 18 N 1.46497 * 109.46702 * 179.97438 * 17 16 15 19 19 C 1.36936 * 120.00277 * 274.99787 * 18 17 16 20 20 H 1.08001 * 120.00000 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00092 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00149 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.46951 * 89.99545 * 23 21 19 25 25 H 1.48499 * 109.47051 * 209.99563 * 23 21 19 26 26 H 1.48502 * 109.47038 * 330.00015 * 23 21 19 27 27 C 1.52995 * 109.46879 * 300.00043 * 17 16 15 28 28 C 1.52999 * 109.46980 * 155.00132 * 14 13 11 29 29 H 1.08997 * 109.47042 * 305.02009 * 1 2 3 30 30 H 1.09001 * 109.46835 * 65.02199 * 1 2 3 31 31 H 1.09005 * 109.47027 * 185.02190 * 1 2 3 32 32 H 1.09000 * 109.46969 * 239.99984 * 2 1 3 33 33 H 1.09003 * 109.46817 * 120.00403 * 2 1 3 34 34 H 1.09000 * 110.71860 * 336.59925 * 5 3 2 35 35 H 1.08999 * 110.72211 * 99.69278 * 5 3 2 36 36 H 1.08993 * 111.00191 * 153.66267 * 6 5 3 37 37 H 1.09001 * 111.00124 * 277.51443 * 6 5 3 38 38 H 1.09000 * 110.34425 * 204.16863 * 7 6 5 39 39 H 1.08997 * 110.44358 * 81.91762 * 7 6 5 40 40 H 0.96995 * 120.00039 * 0.02562 * 13 11 9 41 41 H 1.08998 * 109.47547 * 34.99942 * 14 13 11 42 42 H 1.08998 * 109.47250 * 300.00540 * 15 14 13 43 43 H 1.09001 * 109.46623 * 60.00389 * 15 14 13 44 44 H 1.09000 * 109.46903 * 300.00386 * 16 15 14 45 45 H 1.08991 * 109.46908 * 180.02562 * 16 15 14 46 46 H 1.08998 * 109.46909 * 59.99891 * 17 16 15 47 47 H 0.97002 * 119.99962 * 95.00424 * 18 17 16 48 48 H 0.96995 * 120.00762 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.47226 * 299.99654 * 27 17 16 50 50 H 1.09008 * 109.46808 * 180.02562 * 27 17 16 51 51 H 1.09000 * 109.47206 * 299.99179 * 28 14 13 52 52 H 1.08997 * 109.47837 * 59.99805 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6165 1.9852 0.8451 5 6 1.6474 2.1379 -1.3205 6 6 2.8893 3.0111 -1.6409 7 6 4.0423 2.1023 -1.1318 8 7 3.5080 1.4570 0.0814 9 6 4.2433 0.9619 1.0964 10 8 3.7001 0.3751 2.0093 11 6 5.7277 1.1355 1.0980 12 8 6.2708 1.7227 0.1854 13 7 6.4632 0.6399 2.1128 14 6 7.9182 0.8106 2.1145 15 6 8.5639 -0.3081 1.2944 16 6 10.0835 -0.1303 1.2967 17 6 10.6016 -0.1882 2.7352 18 7 12.0567 -0.0185 2.7372 19 6 12.8725 -1.1003 2.5389 20 1 12.4432 -2.0786 2.3806 21 6 14.2513 -0.9395 2.5414 22 7 15.0355 -1.9794 2.3513 23 14 14.9939 0.7524 2.8160 24 1 15.2154 0.9658 4.2689 25 1 16.2906 0.8462 2.0985 26 1 14.0658 1.7901 2.2992 27 6 9.9559 0.9304 3.5552 28 6 8.4367 0.7529 3.5528 29 1 -0.3633 0.5897 0.8416 30 1 -0.3633 0.4340 -0.9316 31 1 -0.3633 -1.0238 0.0900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.4788 1.4034 -2.1080 35 1 0.7639 2.7607 -1.1805 36 1 2.9739 3.1917 -2.7125 37 1 2.8592 3.9507 -1.0891 38 1 4.9185 2.7028 -0.8874 39 1 4.2945 1.3517 -1.8808 40 1 6.0291 0.1702 2.8421 41 1 8.1714 1.7756 1.6754 42 1 8.3107 -1.2731 1.7335 43 1 8.1944 -0.2670 0.2697 44 1 10.3370 0.8347 0.8578 45 1 10.5434 -0.9269 0.7121 46 1 10.3480 -1.1532 3.1740 47 1 12.4423 0.8602 2.8792 48 1 15.9989 -1.8672 2.3534 49 1 10.2095 1.8954 3.1163 50 1 10.3254 0.8894 4.5799 51 1 7.9768 1.5500 4.1370 52 1 8.1836 -0.2120 3.9920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026589592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:06 Heat of formation + Delta-G solvation = -91.742029 kcal Electronic energy + Delta-G solvation = -29789.942988 eV Core-core repulsion = 25788.032637 eV Total energy + Delta-G solvation = -4001.910351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03158 -40.56944 -39.28223 -38.69483 -36.58762 -34.77197 -34.40776 -32.90326 -32.58787 -31.73824 -29.57721 -28.81417 -26.67991 -25.22460 -24.12455 -23.66396 -23.09811 -22.26445 -21.70163 -21.23159 -20.52988 -19.55177 -18.66970 -18.24189 -17.38855 -17.06844 -16.75692 -16.47579 -16.21365 -15.73190 -15.48683 -15.22297 -15.07263 -14.92794 -14.75952 -14.55127 -14.37420 -14.33514 -14.02558 -13.70522 -13.45581 -13.41666 -13.13713 -12.99800 -12.91316 -12.80013 -12.65078 -12.42850 -12.30174 -12.14696 -12.07159 -11.98728 -11.96217 -11.78705 -11.60762 -11.50376 -11.43037 -11.25001 -10.90114 -10.54683 -10.24430 -9.83270 -9.29057 -8.00738 -5.33698 0.29791 1.19006 1.38664 1.42138 1.49403 2.08084 2.40286 2.49901 3.21944 3.29981 3.58241 3.59127 3.66286 3.70984 3.81018 3.84660 4.16751 4.20660 4.21481 4.27905 4.31973 4.32628 4.45776 4.47189 4.55079 4.55692 4.58686 4.71889 4.78077 4.89658 4.90405 4.92276 4.98077 5.05060 5.08728 5.10194 5.13092 5.14728 5.21193 5.23314 5.24254 5.31772 5.34580 5.44878 5.47761 5.58757 5.79667 6.00845 6.21620 6.23817 6.63628 6.90788 7.10211 7.87203 8.06171 9.20929 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.002011 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.241700 B =13916.981752 C =14187.014521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.128 3.872 4 H 0.076 0.924 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.085 3.915 8 N -0.586 5.586 9 C 0.517 3.483 10 O -0.542 6.542 11 C 0.507 3.493 12 O -0.535 6.535 13 N -0.683 5.683 14 C 0.151 3.849 15 C -0.115 4.115 16 C -0.122 4.122 17 C 0.173 3.827 18 N -0.752 5.752 19 C -0.226 4.226 20 H 0.055 0.945 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.252 1.252 27 C -0.115 4.115 28 C -0.110 4.110 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.419 0.581 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.365 0.635 48 H 0.256 0.744 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.093 0.907 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.586 12.496 -5.682 36.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.094 0.906 5 C -0.157 4.157 6 C -0.165 4.165 7 C -0.037 4.037 8 N -0.319 5.319 9 C 0.300 3.700 10 O -0.420 6.420 11 C 0.288 3.712 12 O -0.412 6.412 13 N -0.335 5.335 14 C 0.048 3.952 15 C -0.154 4.154 16 C -0.163 4.163 17 C 0.065 3.935 18 N -0.395 5.395 19 C -0.357 4.357 20 H 0.073 0.927 21 C -0.260 4.260 22 N -0.637 5.637 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.226 1.226 26 H -0.176 1.176 27 C -0.153 4.153 28 C -0.148 4.148 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.198 0.802 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.111 0.889 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -33.385 12.363 -5.805 36.071 hybrid contribution 1.202 -0.040 0.340 1.249 sum -32.184 12.323 -5.466 34.893 Atomic orbital electron populations 1.21683 0.93100 1.02337 1.02856 1.21865 0.97883 0.95605 1.01924 1.22029 0.77680 0.97302 1.00385 0.90564 1.22774 0.99011 0.99236 0.94654 1.22927 0.92649 0.97676 1.03254 1.22940 0.98913 0.96666 0.85171 1.48526 1.08154 1.55994 1.19259 1.19833 0.87689 0.80120 0.82374 1.90734 1.73173 1.41723 1.36414 1.20165 0.87961 0.79950 0.83154 1.90707 1.73241 1.41675 1.35589 1.45849 1.07774 1.55811 1.24105 1.21100 0.77117 0.99440 0.97574 1.21780 0.94749 0.98960 0.99909 1.21992 0.94191 1.00938 0.99198 1.20492 0.81661 0.97774 0.93576 1.42814 1.02419 1.06438 1.87820 1.19026 0.88450 0.89030 1.39189 0.92741 1.25530 0.96522 1.01032 1.02914 1.69889 1.03499 1.31172 1.59132 0.85384 0.77606 0.80642 0.77983 1.20295 1.22606 1.17619 1.21673 0.94570 0.98384 1.00717 1.21675 0.94755 1.04313 0.94078 0.92425 0.90713 0.92407 0.91919 0.93115 0.89224 0.87681 0.87503 0.90169 0.89112 0.90977 0.74397 0.89714 0.91320 0.92703 0.92677 0.94316 0.93745 0.80161 0.93480 0.91347 0.90598 0.88886 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.66 71.98 0.70 -0.66 16 2 C -0.13 -1.96 5.39 30.59 0.16 -1.79 16 3 C 0.13 1.76 2.94 45.34 0.13 1.90 16 4 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 5 C -0.12 -0.84 5.60 31.79 0.18 -0.66 16 6 C -0.13 -1.04 7.12 32.16 0.23 -0.81 16 7 C 0.08 1.31 6.24 87.02 0.54 1.85 16 8 N -0.59 -10.95 3.07 -788.65 -2.42 -13.37 16 9 C 0.52 12.05 7.73 87.27 0.67 12.73 16 10 O -0.54 -14.35 15.30 -3.25 -0.05 -14.40 16 11 C 0.51 12.25 7.82 87.27 0.68 12.93 16 12 O -0.53 -14.77 13.37 -3.25 -0.04 -14.81 16 13 N -0.68 -14.57 5.07 -443.86 -2.25 -16.82 16 14 C 0.15 3.49 2.46 44.99 0.11 3.60 16 15 C -0.11 -3.16 5.49 30.60 0.17 -2.99 16 16 C -0.12 -4.22 5.50 30.60 0.17 -4.05 16 17 C 0.17 6.26 2.77 44.99 0.12 6.38 16 18 N -0.75 -34.64 4.93 -322.95 -1.59 -36.23 16 19 C -0.23 -12.90 10.41 84.03 0.87 -12.03 16 20 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 22 N -0.99 -63.93 13.97 21.65 0.30 -63.62 16 23 Si 0.96 45.79 27.74 68.60 1.90 47.69 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 27 C -0.11 -3.07 5.39 30.58 0.16 -2.90 16 28 C -0.11 -2.23 5.39 30.58 0.16 -2.07 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.45 7.58 -2.39 -0.02 0.43 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.91 8.06 -2.39 -0.02 0.89 16 33 H 0.05 1.04 6.61 -2.39 -0.02 1.03 16 34 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.34 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 1.74 5.89 -2.39 -0.01 1.73 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 7.70 8.07 -92.71 -0.75 6.95 16 41 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 47 H 0.37 16.07 5.66 -92.71 -0.52 15.55 16 48 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 49 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 50 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 51 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -73.38 403.42 0.97 -72.41 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.42 Total: 31.36 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.54 Total: 7.80 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.96 Total: -130.04 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.09 Total: -29.22 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -73.38 0.97 -72.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026589592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.331 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds