Wall clock time and date at job start Tue Mar 31 2020 19:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47137 * 2 1 4 4 H 1.08998 * 109.87191 * 304.98419 * 3 2 1 5 5 C 1.54321 * 110.00715 * 66.08495 * 3 2 1 6 6 C 1.55163 * 102.94043 * 141.68206 * 5 3 2 7 7 C 1.55127 * 101.48335 * 324.33075 * 6 5 3 8 8 N 1.47020 * 109.88035 * 183.96909 * 3 2 1 9 9 C 1.34776 * 125.64952 * 61.45303 * 8 3 2 10 10 O 1.21351 * 120.00017 * 5.56252 * 9 8 3 11 11 C 1.49456 * 120.00261 * 185.55888 * 9 8 3 12 12 O 1.21350 * 119.99372 * 6.33556 * 11 9 8 13 13 N 1.34772 * 120.00245 * 186.33287 * 11 9 8 14 14 C 1.46925 * 120.63063 * 6.84265 * 13 11 9 15 15 C 1.53193 * 108.77778 * 126.36781 * 14 13 11 16 16 C 1.53047 * 109.30663 * 54.63616 * 15 14 13 17 17 C 1.53035 * 109.53997 * 298.63229 * 16 15 14 18 18 H 1.09006 * 109.50042 * 301.38849 * 17 16 15 19 19 N 1.46500 * 109.50094 * 181.32196 * 17 16 15 20 20 C 1.46501 * 119.99577 * 300.00192 * 19 17 16 21 21 C 1.36933 * 120.00176 * 119.99954 * 19 17 16 22 22 H 1.08003 * 120.00053 * 46.62731 * 21 19 17 23 23 C 1.38809 * 119.99889 * 226.62431 * 21 19 17 24 24 N 1.31622 * 119.99970 * 178.22118 * 23 21 19 25 25 Si 1.86794 * 120.00214 * 358.49525 * 23 21 19 26 26 H 1.48501 * 109.47424 * 273.97232 * 25 23 21 27 27 H 1.48506 * 109.46992 * 33.97313 * 25 23 21 28 28 H 1.48502 * 109.47544 * 153.97077 * 25 23 21 29 29 C 1.46925 * 120.62854 * 186.82038 * 13 11 9 30 30 H 1.09003 * 109.47048 * 304.71090 * 1 2 3 31 31 H 1.09004 * 109.46831 * 64.70804 * 1 2 3 32 32 H 1.08994 * 109.47439 * 184.70921 * 1 2 3 33 33 H 1.09001 * 109.47021 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47261 * 120.00042 * 2 1 3 35 35 H 1.08999 * 110.71963 * 260.03999 * 5 3 2 36 36 H 1.08996 * 110.72419 * 23.13825 * 5 3 2 37 37 H 1.09000 * 111.00343 * 82.56648 * 6 5 3 38 38 H 1.09001 * 110.99935 * 206.42220 * 6 5 3 39 39 H 1.08996 * 110.50001 * 278.45010 * 7 6 5 40 40 H 1.09004 * 110.34129 * 156.06337 * 7 6 5 41 41 H 1.09006 * 109.58752 * 6.58405 * 14 13 11 42 42 H 1.08999 * 109.70252 * 246.22896 * 14 13 11 43 43 H 1.08997 * 109.49968 * 294.68786 * 15 14 13 44 44 H 1.08993 * 109.49615 * 174.58564 * 15 14 13 45 45 H 1.09003 * 109.45258 * 178.61681 * 16 15 14 46 46 H 1.08994 * 109.46060 * 58.65572 * 16 15 14 47 47 H 1.08996 * 109.47060 * 266.03285 * 20 19 17 48 48 H 1.09004 * 109.47359 * 26.03443 * 20 19 17 49 49 H 1.08999 * 109.46851 * 146.03756 * 20 19 17 50 50 H 0.96998 * 120.00371 * 179.97438 * 24 23 21 51 51 H 1.08998 * 109.58545 * 113.84494 * 29 13 11 52 52 H 1.08996 * 109.58705 * 353.41907 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6094 1.9878 -0.8399 5 6 1.6618 2.1363 1.3256 6 6 2.9115 3.0030 1.6331 7 6 4.0548 2.0910 1.1158 8 7 3.5071 1.4542 -0.0957 9 6 4.2314 0.9594 -1.1189 10 8 3.6726 0.5416 -2.1117 11 6 5.7230 0.9252 -1.0308 12 8 6.2769 1.2347 0.0036 13 7 6.4528 0.5507 -2.1001 14 6 5.8101 0.3176 -3.4006 15 6 6.5215 1.1641 -4.4610 16 6 8.0197 0.8527 -4.4355 17 6 8.5943 1.2140 -3.0638 18 1 8.4196 2.2711 -2.8631 19 7 10.0343 0.9452 -3.0506 20 6 10.5283 -0.4123 -3.2945 21 6 10.9186 1.9628 -2.8104 22 1 10.7472 2.6449 -1.9909 23 6 12.0353 2.1175 -3.6203 24 7 12.8666 3.1163 -3.4112 25 14 12.3542 0.9126 -5.0117 26 1 13.0990 -0.2611 -4.4892 27 1 11.0595 0.4629 -5.5835 28 1 13.1575 1.5782 -6.0686 29 6 7.9063 0.3682 -1.9876 30 1 -0.3633 0.5852 0.8448 31 1 -0.3633 0.4391 -0.9292 32 1 -0.3634 -1.0241 0.0844 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.7802 2.7637 1.1946 36 1 1.4963 1.4005 2.1125 37 1 2.8791 3.9440 1.0838 38 1 3.0099 3.1806 2.7040 39 1 4.3071 1.3359 1.8603 40 1 4.9324 2.6877 0.8671 41 1 4.7604 0.6064 -3.3465 42 1 5.8857 -0.7374 -3.6641 43 1 6.3659 2.2214 -4.2469 44 1 6.1176 0.9284 -5.4455 45 1 8.5248 1.4356 -5.2057 46 1 8.1731 -0.2096 -4.6251 47 1 10.6716 -0.9232 -2.3424 48 1 9.8027 -0.9605 -3.8954 49 1 11.4781 -0.3631 -3.8270 50 1 13.6472 3.2242 -3.9769 51 1 8.1551 -0.6828 -2.1345 52 1 8.2398 0.6902 -1.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027641367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:35 Heat of formation + Delta-G solvation = -41.298574 kcal Electronic energy + Delta-G solvation = -31076.641358 eV Core-core repulsion = 27076.918399 eV Total energy + Delta-G solvation = -3999.722959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22169 -40.57154 -39.03982 -38.85237 -36.88717 -34.49943 -34.10073 -33.22947 -32.63118 -31.17281 -28.85341 -28.13838 -27.60138 -25.76756 -25.39340 -23.82346 -23.13048 -22.98406 -21.58871 -20.65421 -20.08574 -18.98957 -18.36130 -18.16053 -17.66256 -17.50333 -16.93293 -16.46348 -15.86722 -15.78662 -15.52897 -15.31475 -15.27980 -14.93628 -14.77421 -14.58071 -14.45950 -14.34566 -14.04652 -13.97121 -13.94191 -13.67759 -13.43067 -13.09265 -12.99243 -12.80794 -12.62302 -12.56139 -12.25515 -12.15248 -12.11665 -12.04442 -11.84463 -11.67512 -11.61545 -11.58196 -11.42509 -11.23209 -10.75879 -10.24374 -9.95646 -9.76620 -8.70278 -8.18210 -5.82423 0.25857 1.12524 1.29728 1.38824 1.51663 2.01390 2.26319 2.37622 3.01815 3.07757 3.25863 3.56655 3.64961 3.86474 3.89450 3.95332 4.08766 4.13804 4.18520 4.22800 4.29407 4.32596 4.43750 4.46862 4.54754 4.56037 4.59710 4.71313 4.73089 4.78660 4.82663 4.88781 4.92785 4.95458 4.97713 5.00182 5.07804 5.09662 5.15031 5.16494 5.24911 5.31299 5.33911 5.39038 5.40971 5.47250 5.93424 5.99017 6.14717 6.17943 6.53926 6.84148 6.94118 7.51749 7.97066 8.95916 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.002734 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.366348 B =10239.912675 C =10918.672632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.127 3.873 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.095 3.905 8 N -0.584 5.584 9 C 0.526 3.474 10 O -0.522 6.522 11 C 0.496 3.504 12 O -0.546 6.546 13 N -0.574 5.574 14 C 0.069 3.931 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.171 3.829 18 H 0.043 0.957 19 N -0.618 5.618 20 C 0.104 3.896 21 C -0.268 4.268 22 H 0.030 0.970 23 C -0.024 4.024 24 N -0.958 5.958 25 Si 0.982 3.018 26 H -0.274 1.274 27 H -0.249 1.249 28 H -0.315 1.315 29 C 0.109 3.891 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.072 0.928 49 H 0.020 0.980 50 H 0.265 0.735 51 H 0.082 0.918 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.648 -6.683 6.089 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.026 3.974 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.166 4.166 7 C -0.027 4.027 8 N -0.316 5.316 9 C 0.309 3.691 10 O -0.401 6.401 11 C 0.279 3.721 12 O -0.425 6.425 13 N -0.306 5.306 14 C -0.051 4.051 15 C -0.160 4.160 16 C -0.169 4.169 17 C 0.064 3.936 18 H 0.062 0.938 19 N -0.343 5.343 20 C -0.039 4.039 21 C -0.398 4.398 22 H 0.048 0.952 23 C -0.220 4.220 24 N -0.601 5.601 25 Si 0.812 3.188 26 H -0.202 1.202 27 H -0.173 1.173 28 H -0.245 1.245 29 C -0.015 4.015 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.160 0.840 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.038 0.962 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.459 -6.695 6.016 29.849 hybrid contribution 1.503 -0.134 -0.483 1.584 sum -26.956 -6.830 5.533 28.353 Atomic orbital electron populations 1.21683 0.92881 1.02622 1.02765 1.21851 0.98042 0.95287 1.01891 1.22065 0.77219 0.97622 1.00498 0.90239 1.22777 0.98777 0.99255 0.94638 1.22903 0.92735 0.97650 1.03285 1.22709 0.98002 0.96444 0.85541 1.48554 1.08440 1.55649 1.18998 1.19583 0.87250 0.79253 0.83004 1.90420 1.71997 1.48482 1.29231 1.20353 0.88698 0.78866 0.84156 1.90725 1.73147 1.48113 1.30481 1.48120 1.07749 1.64197 1.10560 1.23060 1.01100 1.01100 0.79868 1.21891 0.94079 0.99862 1.00209 1.22028 0.95882 1.01882 0.97116 1.20745 0.82368 0.96847 0.93664 0.93823 1.44014 1.01276 1.04358 1.84613 1.21508 0.97493 0.86122 0.98803 1.18561 1.04342 1.07402 1.09471 0.95249 1.26414 0.97816 0.98166 0.99625 1.69928 1.15385 1.32515 1.42268 0.85340 0.78152 0.77299 0.78015 1.20173 1.17329 1.24453 1.22139 0.77893 1.00781 1.00642 0.90617 0.92551 0.92106 0.93187 0.91790 0.87420 0.88915 0.90245 0.87396 0.90709 0.91185 0.84044 0.89918 0.92721 0.87864 0.93086 0.90884 0.95533 0.90940 0.96237 0.92632 0.89974 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.82 71.98 0.71 -0.70 16 2 C -0.13 -2.01 5.39 30.60 0.17 -1.85 16 3 C 0.13 1.98 2.87 45.34 0.13 2.11 16 4 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.12 -1.03 5.49 31.78 0.17 -0.85 16 6 C -0.13 -1.44 7.10 32.06 0.23 -1.21 16 7 C 0.10 1.87 5.80 86.93 0.50 2.38 16 8 N -0.58 -12.91 3.06 -789.18 -2.42 -15.33 16 9 C 0.53 14.48 7.51 87.27 0.66 15.14 16 10 O -0.52 -14.67 12.31 -3.25 -0.04 -14.71 16 11 C 0.50 16.11 7.67 87.27 0.67 16.78 16 12 O -0.55 -20.19 13.49 -3.25 -0.04 -20.24 16 13 N -0.57 -18.17 2.97 -820.48 -2.44 -20.61 16 14 C 0.07 1.79 6.03 86.36 0.52 2.31 16 15 C -0.12 -3.20 6.08 30.67 0.19 -3.02 16 16 C -0.13 -4.30 5.13 30.62 0.16 -4.14 16 17 C 0.17 6.95 2.74 45.07 0.12 7.07 16 18 H 0.04 2.03 7.89 -2.38 -0.02 2.01 16 19 N -0.62 -29.57 2.40 -702.34 -1.69 -31.26 16 20 C 0.10 4.28 8.26 127.77 1.06 5.34 16 21 C -0.27 -15.79 9.92 84.03 0.83 -14.95 16 22 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 23 C -0.02 -1.43 5.50 84.86 0.47 -0.96 16 24 N -0.96 -61.42 13.97 21.65 0.30 -61.12 16 25 Si 0.98 47.38 24.61 68.60 1.69 49.06 16 26 H -0.27 -12.55 6.84 99.48 0.68 -11.87 16 27 H -0.25 -11.00 6.70 99.48 0.67 -10.33 16 28 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 29 C 0.11 3.94 5.80 86.36 0.50 4.45 16 30 H 0.07 0.48 7.31 -2.39 -0.02 0.47 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 1.03 6.92 -2.39 -0.02 1.01 16 34 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.64 7.79 -2.39 -0.02 0.62 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.75 6.69 -2.38 -0.02 1.73 16 41 H 0.14 3.70 4.19 -58.04 -0.24 3.46 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 2.19 6.71 -2.39 -0.02 2.17 16 47 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 2.46 6.46 -2.38 -0.02 2.44 16 49 H 0.02 0.87 2.36 -2.39 -0.01 0.86 16 50 H 0.26 16.00 8.31 -92.71 -0.77 15.22 16 51 H 0.08 2.70 7.51 -2.39 -0.02 2.68 16 52 H 0.07 2.75 7.00 -2.39 -0.02 2.74 16 Total: -1.00 -73.56 387.53 3.05 -70.51 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.61 Total: 15.80 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 7.08 Total: 27.88 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -6.24 Total: -128.31 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.08 Total: -34.94 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.69 Total: 49.06 kcal Total: -73.56 3.05 -70.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027641367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.213 kcal (2) G-P(sol) polarization free energy of solvation -73.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds