Wall clock time and date at job start Tue Mar 31 2020 19:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 H 1.08999 * 109.99743 * 51.08511 * 3 2 1 5 5 C 1.54330 * 109.99164 * 290.04918 * 3 2 1 6 6 C 1.55161 * 103.01910 * 218.66247 * 5 3 2 7 7 C 1.54917 * 101.57917 * 35.30859 * 6 5 3 8 8 N 1.47019 * 109.88205 * 172.18003 * 3 2 1 9 9 C 1.34779 * 125.64873 * 298.39744 * 8 3 2 10 10 O 1.21351 * 119.99975 * 4.25106 * 9 8 3 11 11 C 1.49454 * 120.00017 * 184.25629 * 9 8 3 12 12 O 1.21345 * 119.99922 * 353.26612 * 11 9 8 13 13 N 1.34778 * 119.99956 * 173.26108 * 11 9 8 14 14 C 1.46920 * 120.63157 * 172.62934 * 13 11 9 15 15 C 1.53185 * 108.77762 * 126.41271 * 14 13 11 16 16 C 1.53036 * 109.31423 * 54.63566 * 15 14 13 17 17 C 1.53038 * 109.53986 * 298.63699 * 16 15 14 18 18 H 1.09001 * 109.52070 * 301.39470 * 17 16 15 19 19 N 1.46503 * 109.50089 * 181.31282 * 17 16 15 20 20 C 1.46491 * 119.99943 * 300.16123 * 19 17 16 21 21 C 1.36937 * 119.99518 * 120.16146 * 19 17 16 22 22 H 1.07998 * 120.00291 * 332.79420 * 21 19 17 23 23 C 1.38819 * 119.99616 * 153.07612 * 21 19 17 24 24 N 1.31615 * 119.99685 * 167.91624 * 23 21 19 25 25 Si 1.86797 * 120.00012 * 347.92025 * 23 21 19 26 26 H 1.48497 * 109.47387 * 83.96788 * 25 23 21 27 27 H 1.48498 * 109.47314 * 203.96814 * 25 23 21 28 28 H 1.48507 * 109.47164 * 323.96820 * 25 23 21 29 29 C 1.46928 * 120.62887 * 352.65241 * 13 11 9 30 30 H 1.09004 * 109.47131 * 305.33416 * 1 2 3 31 31 H 1.09006 * 109.46777 * 65.33299 * 1 2 3 32 32 H 1.09003 * 109.46801 * 185.32595 * 1 2 3 33 33 H 1.09002 * 109.47299 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.46576 * 119.99919 * 2 1 3 35 35 H 1.08998 * 110.85391 * 100.20063 * 5 3 2 36 36 H 1.08996 * 110.67000 * 337.04332 * 5 3 2 37 37 H 1.08993 * 111.00834 * 277.23181 * 6 5 3 38 38 H 1.09000 * 111.00297 * 153.37844 * 6 5 3 39 39 H 1.08996 * 110.36268 * 204.14756 * 7 6 5 40 40 H 1.08999 * 110.46087 * 81.87446 * 7 6 5 41 41 H 1.08995 * 109.58774 * 246.20149 * 14 13 11 42 42 H 1.09008 * 109.58468 * 6.48468 * 14 13 11 43 43 H 1.09008 * 109.50217 * 174.58693 * 15 14 13 44 44 H 1.09004 * 109.49872 * 294.64996 * 15 14 13 45 45 H 1.09000 * 109.46224 * 178.61277 * 16 15 14 46 46 H 1.09003 * 109.45724 * 58.65507 * 16 15 14 47 47 H 1.09000 * 109.47307 * 274.38841 * 20 19 17 48 48 H 1.09000 * 109.47323 * 34.38936 * 20 19 17 49 49 H 1.09004 * 109.47196 * 154.38712 * 20 19 17 50 50 H 0.97006 * 120.00075 * 179.97438 * 24 23 21 51 51 H 1.08993 * 109.58600 * 113.80048 * 29 13 11 52 52 H 1.08992 * 109.59036 * 353.36840 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5577 2.0084 0.7970 5 6 1.7472 2.1057 -1.3624 6 6 3.0175 2.9599 -1.6157 7 6 4.1222 2.0639 -1.0018 8 7 3.4981 1.4573 0.1881 9 6 4.1557 0.9886 1.2672 10 8 3.5445 0.4331 2.1562 11 6 5.6376 1.1532 1.3689 12 8 6.2647 1.5972 0.4296 13 7 6.2776 0.8085 2.5039 14 6 7.7455 0.8113 2.5659 15 6 8.1871 1.6695 3.7555 16 6 7.5053 1.1606 5.0276 17 6 5.9872 1.2850 4.8794 18 1 5.7234 2.3263 4.6944 19 7 5.3365 0.8269 6.1095 20 6 5.5376 -0.5469 6.5765 21 6 4.5405 1.6831 6.8226 22 1 4.7135 2.7480 6.7743 23 6 3.5148 1.1817 7.6122 24 7 2.9056 1.9661 8.4759 25 14 2.9991 -0.6063 7.4491 26 1 3.8906 -1.4563 8.2785 27 1 1.5966 -0.7612 7.9116 28 1 3.1003 -1.0229 6.0272 29 6 5.5206 0.4225 3.7024 30 1 -0.3633 0.5944 0.8384 31 1 -0.3633 0.4289 -0.9340 32 1 -0.3633 -1.0233 0.0954 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.8621 2.7391 -1.3033 36 1 1.6285 1.3512 -2.1400 37 1 2.9557 3.9157 -1.0955 38 1 3.1825 3.1076 -2.6829 39 1 4.9828 2.6671 -0.7130 40 1 4.4220 1.2904 -1.7088 41 1 8.1076 -0.2084 2.6966 42 1 8.1495 1.2271 1.6428 43 1 9.2690 1.6023 3.8709 44 1 7.9037 2.7074 3.5805 45 1 7.8368 1.7540 5.8796 46 1 7.7700 0.1154 5.1882 47 1 4.8203 -1.2057 6.0871 48 1 6.5504 -0.8685 6.3342 49 1 5.3916 -0.5888 7.6559 50 1 2.1886 1.6159 9.0274 51 1 5.7012 -0.6289 3.9258 52 1 4.4565 0.5840 3.5304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027641368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:39 Heat of formation + Delta-G solvation = -19.492799 kcal Electronic energy + Delta-G solvation = -31678.716058 eV Core-core repulsion = 27679.938669 eV Total energy + Delta-G solvation = -3998.777389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.02092 -39.41660 -37.71329 -37.61375 -35.21926 -33.61127 -32.49896 -31.71236 -31.54273 -29.43852 -28.06947 -26.42108 -26.23084 -24.49658 -23.82606 -22.99687 -22.29082 -21.37112 -20.39399 -19.53320 -18.85109 -17.18807 -17.09817 -16.64914 -16.47208 -15.69103 -15.42106 -15.24016 -14.83678 -14.51251 -14.42832 -14.10867 -13.79772 -13.72083 -13.58519 -13.39509 -13.25285 -12.95009 -12.69013 -12.59778 -12.50926 -12.28582 -12.09964 -12.03859 -11.77637 -11.59771 -11.41059 -11.38275 -11.10181 -10.98473 -10.93633 -10.64182 -10.55641 -10.34651 -10.15486 -10.01392 -9.86691 -9.46032 -8.93284 -8.79978 -8.61898 -8.49021 -6.92643 -5.89473 -3.31599 1.53462 2.29610 3.27777 3.36643 3.43850 3.53880 3.55369 4.14467 4.34610 4.48181 4.56841 4.60390 4.90617 4.92838 5.03227 5.10096 5.13019 5.18310 5.22023 5.31714 5.32030 5.40317 5.49328 5.52469 5.57196 5.61239 5.65169 5.72533 5.78642 5.84280 5.89552 5.91013 5.93825 5.98229 6.05670 6.10302 6.17023 6.23265 6.31048 6.31381 6.40905 6.46427 6.60144 6.68693 6.82530 6.88259 7.16036 7.42802 7.79159 7.99991 8.10718 8.35994 8.96508 9.75348 10.07111 11.26652 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.004356 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.876648 B = 6426.127668 C = 8289.420182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.135 3.865 4 H 0.082 0.918 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.097 3.903 8 N -0.591 5.591 9 C 0.519 3.481 10 O -0.495 6.495 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.129 4.129 16 C -0.136 4.136 17 C 0.171 3.829 18 H 0.072 0.928 19 N -0.600 5.600 20 C 0.086 3.914 21 C -0.262 4.262 22 H 0.087 0.913 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.901 3.099 26 H -0.289 1.289 27 H -0.308 1.308 28 H -0.269 1.269 29 C 0.049 3.951 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.017 0.983 48 H 0.035 0.965 49 H 0.062 0.938 50 H 0.262 0.738 51 H 0.062 0.938 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -1.670 -21.348 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.032 3.968 4 H 0.100 0.900 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.025 4.025 8 N -0.325 5.325 9 C 0.303 3.697 10 O -0.370 6.370 11 C 0.293 3.707 12 O -0.413 6.413 13 N -0.303 5.303 14 C -0.013 4.013 15 C -0.167 4.167 16 C -0.176 4.176 17 C 0.062 3.938 18 H 0.091 0.909 19 N -0.323 5.323 20 C -0.059 4.059 21 C -0.390 4.390 22 H 0.104 0.896 23 C -0.175 4.175 24 N -0.559 5.559 25 Si 0.734 3.266 26 H -0.217 1.217 27 H -0.237 1.237 28 H -0.195 1.195 29 C -0.074 4.074 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.035 0.965 48 H 0.054 0.946 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.858 -1.758 -21.110 21.375 hybrid contribution -0.313 -1.138 0.138 1.189 sum 2.545 -2.896 -20.972 21.324 Atomic orbital electron populations 1.21707 0.94937 1.02042 1.01777 1.21925 0.96419 0.95926 1.03314 1.21799 0.79693 0.97155 0.98142 0.89960 1.22742 0.98572 0.99302 0.95847 1.22859 0.94421 0.98661 1.01579 1.22635 0.96969 0.96702 0.86196 1.48357 1.07520 1.59057 1.17579 1.19939 0.88385 0.79864 0.81532 1.90588 1.68694 1.41108 1.36648 1.19913 0.88024 0.79397 0.83403 1.90644 1.67924 1.44800 1.37957 1.48149 1.07246 1.63446 1.11499 1.21743 0.78906 1.00520 1.00152 1.21874 1.00116 0.99894 0.94850 1.22085 0.97614 1.01150 0.96725 1.20686 0.90505 0.97443 0.85142 0.90935 1.44079 1.55964 1.09583 1.22636 1.21607 0.98129 0.86703 0.99420 1.18939 1.07866 0.90671 1.21506 0.89579 1.25259 0.96384 0.97730 0.98133 1.69757 1.26114 1.35737 1.24329 0.86906 0.75930 0.85609 0.78196 1.21702 1.23726 1.19496 1.23783 1.01043 0.99453 0.83123 0.92296 0.92775 0.92493 0.91985 0.90058 0.89853 0.90368 0.90424 0.89718 0.88024 0.91210 0.91277 0.89146 0.90932 0.91510 0.91278 0.92301 0.96506 0.94642 0.91935 0.92770 0.91989 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.71 37.16 0.36 -1.02 16 2 C -0.14 -1.56 5.44 -26.73 -0.15 -1.70 16 3 C 0.13 1.52 2.89 -66.95 -0.19 1.33 16 4 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 5 C -0.13 -0.98 5.85 -24.89 -0.15 -1.13 16 6 C -0.14 -1.06 7.09 -24.58 -0.17 -1.23 16 7 C 0.10 1.03 6.12 -2.53 -0.02 1.02 16 8 N -0.59 -7.85 3.06 -163.52 -0.50 -8.35 16 9 C 0.52 8.50 7.59 -11.58 -0.09 8.42 16 10 O -0.49 -9.47 11.94 5.50 0.07 -9.40 16 11 C 0.51 8.29 7.70 -11.58 -0.09 8.20 16 12 O -0.53 -8.63 13.21 5.50 0.07 -8.56 16 13 N -0.57 -9.19 2.97 -173.28 -0.52 -9.70 16 14 C 0.11 1.44 6.44 -3.72 -0.02 1.42 16 15 C -0.13 -1.68 6.08 -26.62 -0.16 -1.84 16 16 C -0.14 -2.20 5.10 -26.69 -0.14 -2.34 16 17 C 0.17 3.39 2.75 -67.81 -0.19 3.21 16 18 H 0.07 1.55 7.89 -51.93 -0.41 1.14 16 19 N -0.60 -14.31 2.63 -173.35 -0.46 -14.76 16 20 C 0.09 1.90 7.30 59.84 0.44 2.34 16 21 C -0.26 -7.39 10.02 -15.06 -0.15 -7.54 16 22 H 0.09 2.60 8.05 -52.49 -0.42 2.18 16 23 C 0.02 0.69 5.36 -17.43 -0.09 0.60 16 24 N -0.92 -28.54 13.97 55.49 0.78 -27.76 16 25 Si 0.90 23.34 23.91 -169.99 -4.07 19.28 16 26 H -0.29 -7.14 6.42 56.52 0.36 -6.78 16 27 H -0.31 -8.16 7.11 56.52 0.40 -7.75 16 28 H -0.27 -6.93 6.19 56.52 0.35 -6.58 16 29 C 0.05 0.91 5.38 -3.71 -0.02 0.89 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.05 0.41 7.74 -51.93 -0.40 0.01 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 34 H 0.08 1.18 6.51 -51.93 -0.34 0.84 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.22 6.08 -51.93 -0.32 0.90 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.15 7.00 -51.92 -0.36 0.79 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 47 H 0.02 0.39 5.20 -51.93 -0.27 0.12 16 48 H 0.04 0.66 6.47 -51.93 -0.34 0.33 16 49 H 0.06 1.47 5.43 -51.93 -0.28 1.19 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 51 H 0.06 1.16 7.51 -51.93 -0.39 0.77 16 52 H 0.14 3.02 4.23 -55.21 -0.23 2.78 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -32.55 384.61 -8.46 -41.00 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.80 Total: 1.85 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -0.83 Total: 10.60 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.70 Total: -60.57 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.14 Total: -17.96 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.07 Total: 19.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -8.46 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027641368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.509 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds