Wall clock time and date at job start Tue Mar 31 2020 19:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 H 1.08999 * 109.99743 * 51.08511 * 3 2 1 5 5 C 1.54330 * 109.99164 * 290.04918 * 3 2 1 6 6 C 1.55161 * 103.01910 * 218.66247 * 5 3 2 7 7 C 1.54917 * 101.57917 * 35.30859 * 6 5 3 8 8 N 1.47019 * 109.88205 * 172.18003 * 3 2 1 9 9 C 1.34779 * 125.64873 * 298.39744 * 8 3 2 10 10 O 1.21351 * 119.99975 * 4.25106 * 9 8 3 11 11 C 1.49454 * 120.00017 * 184.25629 * 9 8 3 12 12 O 1.21345 * 119.99922 * 353.26612 * 11 9 8 13 13 N 1.34778 * 119.99956 * 173.26108 * 11 9 8 14 14 C 1.46920 * 120.63157 * 172.62934 * 13 11 9 15 15 C 1.53185 * 108.77762 * 126.41271 * 14 13 11 16 16 C 1.53036 * 109.31423 * 54.63566 * 15 14 13 17 17 C 1.53038 * 109.53986 * 298.63699 * 16 15 14 18 18 H 1.09001 * 109.52070 * 301.39470 * 17 16 15 19 19 N 1.46503 * 109.50089 * 181.31282 * 17 16 15 20 20 C 1.46491 * 119.99943 * 300.16123 * 19 17 16 21 21 C 1.36937 * 119.99518 * 120.16146 * 19 17 16 22 22 H 1.07998 * 120.00291 * 332.79420 * 21 19 17 23 23 C 1.38819 * 119.99616 * 153.07612 * 21 19 17 24 24 N 1.31615 * 119.99685 * 167.91624 * 23 21 19 25 25 Si 1.86797 * 120.00012 * 347.92025 * 23 21 19 26 26 H 1.48497 * 109.47387 * 83.96788 * 25 23 21 27 27 H 1.48498 * 109.47314 * 203.96814 * 25 23 21 28 28 H 1.48507 * 109.47164 * 323.96820 * 25 23 21 29 29 C 1.46928 * 120.62887 * 352.65241 * 13 11 9 30 30 H 1.09004 * 109.47131 * 305.33416 * 1 2 3 31 31 H 1.09006 * 109.46777 * 65.33299 * 1 2 3 32 32 H 1.09003 * 109.46801 * 185.32595 * 1 2 3 33 33 H 1.09002 * 109.47299 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.46576 * 119.99919 * 2 1 3 35 35 H 1.08998 * 110.85391 * 100.20063 * 5 3 2 36 36 H 1.08996 * 110.67000 * 337.04332 * 5 3 2 37 37 H 1.08993 * 111.00834 * 277.23181 * 6 5 3 38 38 H 1.09000 * 111.00297 * 153.37844 * 6 5 3 39 39 H 1.08996 * 110.36268 * 204.14756 * 7 6 5 40 40 H 1.08999 * 110.46087 * 81.87446 * 7 6 5 41 41 H 1.08995 * 109.58774 * 246.20149 * 14 13 11 42 42 H 1.09008 * 109.58468 * 6.48468 * 14 13 11 43 43 H 1.09008 * 109.50217 * 174.58693 * 15 14 13 44 44 H 1.09004 * 109.49872 * 294.64996 * 15 14 13 45 45 H 1.09000 * 109.46224 * 178.61277 * 16 15 14 46 46 H 1.09003 * 109.45724 * 58.65507 * 16 15 14 47 47 H 1.09000 * 109.47307 * 274.38841 * 20 19 17 48 48 H 1.09000 * 109.47323 * 34.38936 * 20 19 17 49 49 H 1.09004 * 109.47196 * 154.38712 * 20 19 17 50 50 H 0.97006 * 120.00075 * 179.97438 * 24 23 21 51 51 H 1.08993 * 109.58600 * 113.80048 * 29 13 11 52 52 H 1.08992 * 109.59036 * 353.36840 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5577 2.0084 0.7970 5 6 1.7472 2.1057 -1.3624 6 6 3.0175 2.9599 -1.6157 7 6 4.1222 2.0639 -1.0018 8 7 3.4981 1.4573 0.1881 9 6 4.1557 0.9886 1.2672 10 8 3.5445 0.4331 2.1562 11 6 5.6376 1.1532 1.3689 12 8 6.2647 1.5972 0.4296 13 7 6.2776 0.8085 2.5039 14 6 7.7455 0.8113 2.5659 15 6 8.1871 1.6695 3.7555 16 6 7.5053 1.1606 5.0276 17 6 5.9872 1.2850 4.8794 18 1 5.7234 2.3263 4.6944 19 7 5.3365 0.8269 6.1095 20 6 5.5376 -0.5469 6.5765 21 6 4.5405 1.6831 6.8226 22 1 4.7135 2.7480 6.7743 23 6 3.5148 1.1817 7.6122 24 7 2.9056 1.9661 8.4759 25 14 2.9991 -0.6063 7.4491 26 1 3.8906 -1.4563 8.2785 27 1 1.5966 -0.7612 7.9116 28 1 3.1003 -1.0229 6.0272 29 6 5.5206 0.4225 3.7024 30 1 -0.3633 0.5944 0.8384 31 1 -0.3633 0.4289 -0.9340 32 1 -0.3633 -1.0233 0.0954 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.8621 2.7391 -1.3033 36 1 1.6285 1.3512 -2.1400 37 1 2.9557 3.9157 -1.0955 38 1 3.1825 3.1076 -2.6829 39 1 4.9828 2.6671 -0.7130 40 1 4.4220 1.2904 -1.7088 41 1 8.1076 -0.2084 2.6966 42 1 8.1495 1.2271 1.6428 43 1 9.2690 1.6023 3.8709 44 1 7.9037 2.7074 3.5805 45 1 7.8368 1.7540 5.8796 46 1 7.7700 0.1154 5.1882 47 1 4.8203 -1.2057 6.0871 48 1 6.5504 -0.8685 6.3342 49 1 5.3916 -0.5888 7.6559 50 1 2.1886 1.6159 9.0274 51 1 5.7012 -0.6289 3.9258 52 1 4.4565 0.5840 3.5304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027641368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:38 Heat of formation + Delta-G solvation = -40.903224 kcal Electronic energy + Delta-G solvation = -31679.644484 eV Core-core repulsion = 27679.938669 eV Total energy + Delta-G solvation = -3999.705815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.23095 -40.55726 -39.13552 -38.80410 -36.88214 -34.52234 -34.04261 -33.36548 -32.61508 -31.03135 -28.89870 -28.17261 -27.62182 -25.62179 -25.56537 -24.09785 -23.28148 -22.47556 -21.60549 -20.83547 -20.08921 -18.97415 -18.33778 -18.12617 -17.63683 -17.33142 -16.95816 -16.39854 -16.00699 -15.86965 -15.59385 -15.48561 -15.19215 -14.90830 -14.77433 -14.59276 -14.40444 -14.32431 -14.13834 -13.94248 -13.83052 -13.71206 -13.47299 -13.17541 -13.05441 -12.63857 -12.59041 -12.42624 -12.18230 -12.17591 -12.10961 -12.02362 -11.77188 -11.72069 -11.62017 -11.57726 -11.45594 -11.39979 -10.79491 -10.19522 -9.98305 -9.75010 -8.90630 -8.17338 -5.55274 0.26151 1.15758 1.27881 1.41843 1.48422 2.01451 2.24943 2.39390 2.96912 3.13880 3.32710 3.57423 3.64748 3.82113 3.90176 3.95604 4.06274 4.14262 4.16373 4.19377 4.30526 4.31439 4.44659 4.47089 4.53649 4.55579 4.63315 4.70284 4.71631 4.81706 4.85056 4.85864 4.91225 4.93333 4.95844 4.99563 5.06841 5.07806 5.09848 5.15186 5.23682 5.30332 5.32710 5.39112 5.42388 5.49267 5.81847 5.97512 6.09541 6.16629 6.54939 6.85709 6.89717 7.59827 7.93920 9.02774 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.004356 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.876648 B = 6426.127668 C = 8289.420182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.124 3.876 4 H 0.062 0.938 5 C -0.115 4.115 6 C -0.127 4.127 7 C 0.091 3.909 8 N -0.586 5.586 9 C 0.506 3.494 10 O -0.533 6.533 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.573 5.573 14 C 0.106 3.894 15 C -0.119 4.119 16 C -0.126 4.126 17 C 0.168 3.832 18 H 0.044 0.956 19 N -0.613 5.613 20 C 0.085 3.915 21 C -0.249 4.249 22 H 0.050 0.950 23 C -0.034 4.034 24 N -0.963 5.963 25 Si 0.962 3.038 26 H -0.264 1.264 27 H -0.318 1.318 28 H -0.269 1.269 29 C 0.064 3.936 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.261 0.739 51 H 0.067 0.933 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -2.932 -24.389 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.153 4.153 6 C -0.165 4.165 7 C -0.031 4.031 8 N -0.319 5.319 9 C 0.290 3.710 10 O -0.412 6.412 11 C 0.291 3.709 12 O -0.411 6.411 13 N -0.306 5.306 14 C -0.014 4.014 15 C -0.157 4.157 16 C -0.165 4.165 17 C 0.060 3.940 18 H 0.063 0.937 19 N -0.337 5.337 20 C -0.059 4.059 21 C -0.378 4.378 22 H 0.068 0.932 23 C -0.228 4.228 24 N -0.610 5.610 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.247 1.247 28 H -0.194 1.194 29 C -0.059 4.059 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.034 0.966 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.295 -3.013 -24.226 24.788 hybrid contribution -0.678 -0.624 0.978 1.344 sum 3.616 -3.638 -23.249 23.808 Atomic orbital electron populations 1.21683 0.93365 1.02242 1.02695 1.21859 0.97759 0.95559 1.01948 1.22042 0.78399 0.97393 0.99967 0.92000 1.22760 0.99234 0.99693 0.93602 1.22869 0.92869 0.97658 1.03094 1.22837 0.97587 0.97289 0.85352 1.48582 1.08671 1.57402 1.17281 1.20132 0.88667 0.80137 0.82065 1.90576 1.69337 1.43168 1.38153 1.19940 0.88066 0.79312 0.83536 1.90639 1.67936 1.44723 1.37819 1.48134 1.08420 1.63425 1.10572 1.21995 0.76868 1.01970 1.00603 1.21835 1.01913 0.99033 0.92934 1.21947 0.94319 1.02119 0.98133 1.20801 0.92890 0.96042 0.84227 0.93713 1.44160 1.55711 1.09871 1.23938 1.21631 1.00488 0.85367 0.98381 1.18853 1.07965 0.90007 1.21013 0.93178 1.25902 0.96802 1.01845 0.98298 1.69895 1.27303 1.37818 1.25961 0.85924 0.75251 0.81330 0.78316 1.19021 1.24738 1.19416 1.23283 0.99956 0.99111 0.83572 0.93537 0.90036 0.92285 0.90691 0.93984 0.88013 0.88438 0.90739 0.86634 0.89524 0.90042 0.89042 0.88165 0.87246 0.92535 0.92307 0.90740 0.96644 0.90563 0.93412 0.92964 0.91501 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.71 71.98 0.70 -1.84 16 2 C -0.13 -2.98 5.44 30.60 0.17 -2.82 16 3 C 0.12 2.76 2.89 45.34 0.13 2.89 16 4 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 5 C -0.12 -1.46 5.85 31.79 0.19 -1.27 16 6 C -0.13 -1.61 7.09 31.99 0.23 -1.38 16 7 C 0.09 1.79 6.12 86.86 0.53 2.32 16 8 N -0.59 -15.59 3.06 -789.61 -2.42 -18.01 16 9 C 0.51 17.09 7.59 87.27 0.66 17.75 16 10 O -0.53 -21.57 11.94 -3.25 -0.04 -21.60 16 11 C 0.51 16.45 7.70 87.27 0.67 17.12 16 12 O -0.53 -16.63 13.21 -3.23 -0.04 -16.68 16 13 N -0.57 -17.98 2.97 -820.51 -2.44 -20.42 16 14 C 0.11 2.52 6.44 86.36 0.56 3.08 16 15 C -0.12 -2.78 6.08 30.67 0.19 -2.59 16 16 C -0.13 -3.84 5.10 30.62 0.16 -3.69 16 17 C 0.17 6.71 2.75 45.07 0.12 6.84 16 18 H 0.04 2.00 7.89 -2.39 -0.02 1.98 16 19 N -0.61 -29.53 2.63 -702.35 -1.85 -31.37 16 20 C 0.09 3.63 7.30 127.77 0.93 4.57 16 21 C -0.25 -14.62 10.02 84.04 0.84 -13.77 16 22 H 0.05 3.24 8.05 -2.91 -0.02 3.21 16 23 C -0.03 -2.07 5.36 84.86 0.46 -1.61 16 24 N -0.96 -62.44 13.97 21.65 0.30 -62.14 16 25 Si 0.96 49.23 23.91 68.60 1.64 50.87 16 26 H -0.26 -12.36 6.42 99.48 0.64 -11.73 16 27 H -0.32 -16.63 7.11 99.48 0.71 -15.92 16 28 H -0.27 -13.58 6.19 99.48 0.62 -12.97 16 29 C 0.06 2.41 5.38 86.36 0.46 2.88 16 30 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.08 1.01 7.74 -2.38 -0.02 0.99 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 34 H 0.04 1.28 6.51 -2.39 -0.02 1.26 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.92 7.72 -2.39 -0.02 0.90 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 2.00 6.08 -2.39 -0.01 1.98 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 2.25 7.00 -2.38 -0.02 2.23 16 43 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 2.06 6.74 -2.39 -0.02 2.04 16 47 H 0.02 0.68 5.20 -2.39 -0.01 0.67 16 48 H 0.08 2.62 6.47 -2.39 -0.02 2.60 16 49 H 0.05 2.18 5.43 -2.39 -0.01 2.16 16 50 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 51 H 0.07 2.42 7.51 -2.39 -0.02 2.41 16 52 H 0.11 5.07 4.23 -54.25 -0.23 4.84 16 Total: -1.00 -75.39 384.61 2.68 -72.72 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.53 Total: 18.17 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 6.99 Total: 28.46 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.40 Total: -131.94 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.08 Total: -38.28 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.64 Total: 50.87 kcal Total: -75.39 2.68 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027641368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.814 kcal (2) G-P(sol) polarization free energy of solvation -75.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds