Wall clock time and date at job start Tue Mar 31 2020 19:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 H 1.08997 * 109.99753 * 297.20134 * 3 2 1 5 5 C 1.54315 * 109.77341 * 58.35862 * 3 2 1 6 6 C 1.55158 * 102.86291 * 141.88338 * 5 3 2 7 7 C 1.54907 * 101.58176 * 324.30230 * 6 5 3 8 8 N 1.47024 * 109.88138 * 176.10562 * 3 2 1 9 9 C 1.34777 * 125.64599 * 61.67643 * 8 3 2 10 10 O 1.21352 * 120.00256 * 5.41088 * 9 8 3 11 11 C 1.49453 * 120.00035 * 185.40594 * 9 8 3 12 12 O 1.21355 * 119.99440 * 6.65186 * 11 9 8 13 13 N 1.34778 * 120.00241 * 186.65107 * 11 9 8 14 14 C 1.46925 * 120.62963 * 186.10272 * 13 11 9 15 15 C 1.53190 * 108.77369 * 233.60993 * 14 13 11 16 16 C 1.53035 * 109.31217 * 305.36607 * 15 14 13 17 17 C 1.53039 * 109.53993 * 61.36678 * 16 15 14 18 18 H 1.09002 * 109.49590 * 58.62026 * 17 16 15 19 19 N 1.46497 * 109.50179 * 178.68105 * 17 16 15 20 20 C 1.46502 * 119.99819 * 59.93426 * 19 17 16 21 21 C 1.36935 * 120.00496 * 239.93968 * 19 17 16 22 22 H 1.08003 * 119.99968 * 31.27475 * 21 19 17 23 23 C 1.38815 * 120.00473 * 211.27626 * 21 19 17 24 24 N 1.31628 * 119.99434 * 6.78830 * 23 21 19 25 25 Si 1.86793 * 120.00212 * 186.78683 * 23 21 19 26 26 H 1.48499 * 109.47278 * 60.00405 * 25 23 21 27 27 H 1.48498 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47261 * 299.99755 * 25 23 21 29 29 C 1.46930 * 120.60234 * 6.12717 * 13 11 9 30 30 H 1.09000 * 109.46658 * 64.85021 * 1 2 3 31 31 H 1.08999 * 109.46789 * 184.84744 * 1 2 3 32 32 H 1.08996 * 109.46947 * 304.85175 * 1 2 3 33 33 H 1.08997 * 109.47051 * 239.99482 * 2 1 3 34 34 H 1.09000 * 109.47023 * 119.99983 * 2 1 3 35 35 H 1.09003 * 110.92756 * 23.46835 * 5 3 2 36 36 H 1.09003 * 110.58790 * 260.14649 * 5 3 2 37 37 H 1.08991 * 111.00453 * 206.22552 * 6 5 3 38 38 H 1.09003 * 111.00252 * 82.37734 * 6 5 3 39 39 H 1.08997 * 110.36842 * 278.17113 * 7 6 5 40 40 H 1.09004 * 110.36839 * 155.84446 * 7 6 5 41 41 H 1.09003 * 109.58131 * 113.82391 * 14 13 11 42 42 H 1.08999 * 109.58566 * 353.40010 * 14 13 11 43 43 H 1.09000 * 109.49578 * 185.41809 * 15 14 13 44 44 H 1.08994 * 109.52461 * 65.33736 * 15 14 13 45 45 H 1.09003 * 109.46038 * 301.34535 * 16 15 14 46 46 H 1.09000 * 109.46199 * 181.38954 * 16 15 14 47 47 H 1.08998 * 109.47316 * 85.21405 * 20 19 17 48 48 H 1.09000 * 109.46986 * 325.20946 * 20 19 17 49 49 H 1.08998 * 109.47343 * 205.21490 * 20 19 17 50 50 H 0.96998 * 119.99697 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.61656 * 6.61694 * 29 13 11 52 52 H 1.08999 * 109.56198 * 246.19482 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7229 1.9500 -0.9110 5 6 1.4959 2.1886 1.2363 6 6 2.6959 3.0761 1.6601 7 6 3.8962 2.1534 1.3320 8 7 3.5073 1.4541 0.0939 9 6 4.3561 0.9189 -0.8058 10 8 3.9286 0.4561 -1.8429 11 6 5.8241 0.8956 -0.5263 12 8 6.2409 1.2466 0.5580 13 7 6.6850 0.4847 -1.4785 14 6 8.1148 0.3289 -1.1781 15 6 8.9237 1.1358 -2.1986 16 6 8.5279 0.7051 -3.6127 17 6 7.0418 0.9927 -3.8383 18 1 6.8513 2.0563 -3.6949 19 7 6.6711 0.6092 -5.2027 20 6 6.8347 -0.7783 -5.6436 21 6 6.1717 1.5475 -6.0660 22 1 6.4904 2.5766 -5.9885 23 6 5.2558 1.1763 -7.0408 24 7 4.7659 -0.0454 -7.0523 25 14 4.7185 2.4103 -8.3361 26 1 5.9024 2.8627 -9.1100 27 1 3.7424 1.7707 -9.2544 28 1 4.0841 3.5783 -7.6740 29 6 6.2110 0.1848 -2.8365 30 1 -0.3632 0.4368 -0.9303 31 1 -0.3633 -1.0240 0.0868 32 1 -0.3633 0.5872 0.8433 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.2348 1.4885 2.0299 36 1 0.6377 2.8039 0.9657 37 1 2.6571 3.3028 2.7254 38 1 2.7333 3.9910 1.0687 39 1 4.0557 1.4373 2.1381 40 1 4.7960 2.7459 1.1663 41 1 8.3894 -0.7239 -1.2443 42 1 8.3197 0.6997 -0.1738 43 1 9.9873 0.9522 -2.0467 44 1 8.7159 2.1981 -2.0702 45 1 8.7134 -0.3623 -3.7325 46 1 9.1198 1.2602 -4.3405 47 1 5.9560 -1.3564 -5.3577 48 1 7.7202 -1.2067 -5.1741 49 1 6.9497 -0.8040 -6.7272 50 1 4.1262 -0.3049 -7.7336 51 1 5.1603 0.4607 -2.9266 52 1 6.3298 -0.8798 -3.0377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027641369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:42 Heat of formation + Delta-G solvation = -28.208947 kcal Electronic energy + Delta-G solvation = -31555.760688 eV Core-core repulsion = 27556.605338 eV Total energy + Delta-G solvation = -3999.155350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89795 -39.30996 -37.58510 -37.42905 -34.90595 -33.59076 -32.39690 -31.62115 -31.30025 -28.70651 -27.96482 -26.28425 -25.92429 -24.44097 -23.52883 -22.98121 -22.26070 -21.26831 -20.24320 -19.33740 -18.69093 -17.11927 -16.98863 -16.47471 -16.42461 -15.58179 -15.28768 -14.85670 -14.73038 -14.39931 -14.16404 -13.87591 -13.76353 -13.61876 -13.46724 -13.40047 -13.09235 -12.65062 -12.52408 -12.48110 -12.27965 -12.18102 -11.88504 -11.81001 -11.44555 -11.34145 -11.21446 -11.02452 -10.87099 -10.84187 -10.74965 -10.58490 -10.53737 -10.34681 -10.31295 -10.14634 -9.86002 -9.72170 -8.86000 -8.64607 -8.47851 -8.33098 -6.57931 -5.71445 -3.22938 1.65589 2.40736 3.39364 3.41563 3.45697 3.46370 3.55083 4.23919 4.39760 4.50542 4.59361 4.66136 4.95794 5.06867 5.14806 5.16173 5.24226 5.24840 5.35273 5.35839 5.49540 5.50799 5.56300 5.62598 5.68400 5.70620 5.76045 5.79765 5.82517 5.93263 5.98426 6.00917 6.05568 6.10999 6.14152 6.22554 6.31599 6.35714 6.42998 6.56544 6.72757 6.86829 6.98468 7.03452 7.26550 7.39439 7.59604 7.73707 7.84443 7.93291 8.23490 8.50010 9.28251 9.88549 10.42683 11.34545 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004078 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.470366 B = 6863.865895 C = 8650.568812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.136 3.864 4 H 0.082 0.918 5 C -0.126 4.126 6 C -0.138 4.138 7 C 0.106 3.894 8 N -0.593 5.593 9 C 0.518 3.482 10 O -0.488 6.488 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.570 5.570 14 C 0.109 3.891 15 C -0.128 4.128 16 C -0.136 4.136 17 C 0.169 3.831 18 H 0.061 0.939 19 N -0.586 5.586 20 C 0.161 3.839 21 C -0.261 4.261 22 H 0.063 0.937 23 C 0.012 3.988 24 N -0.900 5.900 25 Si 0.903 3.097 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.049 3.951 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.020 0.980 48 H -0.004 1.004 49 H 0.051 0.949 50 H 0.254 0.746 51 H 0.144 0.856 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 2.147 18.595 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.033 3.967 4 H 0.100 0.900 5 C -0.164 4.164 6 C -0.177 4.177 7 C -0.016 4.016 8 N -0.328 5.328 9 C 0.302 3.698 10 O -0.363 6.363 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.302 5.302 14 C -0.013 4.013 15 C -0.167 4.167 16 C -0.176 4.176 17 C 0.059 3.941 18 H 0.080 0.920 19 N -0.308 5.308 20 C 0.016 3.984 21 C -0.391 4.391 22 H 0.081 0.919 23 C -0.188 4.188 24 N -0.544 5.544 25 Si 0.733 3.267 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C -0.073 4.073 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.014 0.986 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.161 0.839 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.591 1.928 18.352 18.634 hybrid contribution -0.293 0.442 -0.837 0.991 sum -2.884 2.370 17.515 17.908 Atomic orbital electron populations 1.21736 0.94948 1.01885 1.01989 1.21885 0.96306 0.96000 1.03253 1.21733 0.78831 0.96832 0.99312 0.89999 1.22737 0.98123 0.98601 0.96957 1.22879 0.94337 0.98317 1.02122 1.22464 0.98213 0.94914 0.86015 1.48351 1.06312 1.55448 1.22706 1.19987 0.87351 0.79412 0.83093 1.90606 1.77574 1.45197 1.22941 1.19908 0.87093 0.79266 0.84733 1.90664 1.78939 1.48147 1.24058 1.48265 1.07519 1.62490 1.11939 1.21722 0.79320 1.00271 0.99999 1.21874 0.98943 1.00159 0.95726 1.22113 0.99475 1.01296 0.94671 1.20672 0.90793 0.97206 0.85392 0.92027 1.43784 1.74224 1.06852 1.05925 1.20747 0.94662 0.84442 0.98517 1.19090 1.18930 0.90947 1.10109 0.91919 1.25234 0.96402 0.96625 1.00540 1.70012 1.31737 1.17559 1.35045 0.86370 0.78190 0.80769 0.81361 1.20983 1.21585 1.20882 1.23885 1.05132 1.00794 0.77482 0.92388 0.92513 0.92546 0.90375 0.91930 0.90238 0.89908 0.89732 0.90514 0.91008 0.89150 0.91317 0.89340 0.91171 0.91782 0.92265 0.91794 0.96191 0.98603 0.93014 0.93600 0.83915 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.74 37.16 0.36 -1.00 16 2 C -0.14 -1.59 5.36 -26.73 -0.14 -1.73 16 3 C 0.14 1.60 2.98 -66.96 -0.20 1.40 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.13 -1.02 5.25 -24.90 -0.13 -1.15 16 6 C -0.14 -1.13 7.08 -24.58 -0.17 -1.30 16 7 C 0.11 1.20 5.78 -2.53 -0.01 1.18 16 8 N -0.59 -8.29 3.07 -163.52 -0.50 -8.79 16 9 C 0.52 8.97 7.54 -11.58 -0.09 8.89 16 10 O -0.49 -9.94 12.40 5.49 0.07 -9.88 16 11 C 0.51 8.77 7.67 -11.58 -0.09 8.68 16 12 O -0.54 -9.23 13.51 5.49 0.07 -9.15 16 13 N -0.57 -9.84 2.97 -173.27 -0.52 -10.36 16 14 C 0.11 1.57 6.44 -3.71 -0.02 1.55 16 15 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 16 C -0.14 -2.37 5.10 -26.69 -0.14 -2.50 16 17 C 0.17 3.57 2.74 -67.82 -0.19 3.38 16 18 H 0.06 1.38 7.89 -51.93 -0.41 0.97 16 19 N -0.59 -14.83 2.79 -173.35 -0.48 -15.31 16 20 C 0.16 3.98 7.98 59.85 0.48 4.45 16 21 C -0.26 -7.26 9.49 -15.06 -0.14 -7.40 16 22 H 0.06 1.72 7.84 -52.48 -0.41 1.31 16 23 C 0.01 0.33 5.14 -17.43 -0.09 0.24 16 24 N -0.90 -26.51 10.97 55.49 0.61 -25.90 16 25 Si 0.90 22.06 29.56 -169.99 -5.02 17.04 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.05 1.00 5.41 -3.71 -0.02 0.98 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.42 6.79 -51.93 -0.35 0.07 16 33 H 0.08 1.15 7.14 -51.93 -0.37 0.78 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.57 7.52 -51.93 -0.39 0.18 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.13 6.72 -51.93 -0.35 0.78 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 48 H 0.00 -0.10 6.47 -51.93 -0.34 -0.43 16 49 H 0.05 1.38 7.09 -51.93 -0.37 1.01 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.14 3.31 4.15 -55.60 -0.23 3.08 16 52 H 0.06 1.30 7.51 -51.93 -0.39 0.91 16 LS Contribution 393.03 15.07 5.92 5.92 Total: -1.00 -31.47 393.03 -9.54 -41.02 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.93 Total: 1.72 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -0.76 Total: 13.69 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.89 Total: -60.36 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.14 Total: -19.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.47 -9.54 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027641369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.806 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds