Wall clock time and date at job start Tue Mar 31 2020 19:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 H 1.08997 * 109.99753 * 297.20134 * 3 2 1 5 5 C 1.54315 * 109.77341 * 58.35862 * 3 2 1 6 6 C 1.55158 * 102.86291 * 141.88338 * 5 3 2 7 7 C 1.54907 * 101.58176 * 324.30230 * 6 5 3 8 8 N 1.47024 * 109.88138 * 176.10562 * 3 2 1 9 9 C 1.34777 * 125.64599 * 61.67643 * 8 3 2 10 10 O 1.21352 * 120.00256 * 5.41088 * 9 8 3 11 11 C 1.49453 * 120.00035 * 185.40594 * 9 8 3 12 12 O 1.21355 * 119.99440 * 6.65186 * 11 9 8 13 13 N 1.34778 * 120.00241 * 186.65107 * 11 9 8 14 14 C 1.46925 * 120.62963 * 186.10272 * 13 11 9 15 15 C 1.53190 * 108.77369 * 233.60993 * 14 13 11 16 16 C 1.53035 * 109.31217 * 305.36607 * 15 14 13 17 17 C 1.53039 * 109.53993 * 61.36678 * 16 15 14 18 18 H 1.09002 * 109.49590 * 58.62026 * 17 16 15 19 19 N 1.46497 * 109.50179 * 178.68105 * 17 16 15 20 20 C 1.46502 * 119.99819 * 59.93426 * 19 17 16 21 21 C 1.36935 * 120.00496 * 239.93968 * 19 17 16 22 22 H 1.08003 * 119.99968 * 31.27475 * 21 19 17 23 23 C 1.38815 * 120.00473 * 211.27626 * 21 19 17 24 24 N 1.31628 * 119.99434 * 6.78830 * 23 21 19 25 25 Si 1.86793 * 120.00212 * 186.78683 * 23 21 19 26 26 H 1.48499 * 109.47278 * 60.00405 * 25 23 21 27 27 H 1.48498 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47261 * 299.99755 * 25 23 21 29 29 C 1.46930 * 120.60234 * 6.12717 * 13 11 9 30 30 H 1.09000 * 109.46658 * 64.85021 * 1 2 3 31 31 H 1.08999 * 109.46789 * 184.84744 * 1 2 3 32 32 H 1.08996 * 109.46947 * 304.85175 * 1 2 3 33 33 H 1.08997 * 109.47051 * 239.99482 * 2 1 3 34 34 H 1.09000 * 109.47023 * 119.99983 * 2 1 3 35 35 H 1.09003 * 110.92756 * 23.46835 * 5 3 2 36 36 H 1.09003 * 110.58790 * 260.14649 * 5 3 2 37 37 H 1.08991 * 111.00453 * 206.22552 * 6 5 3 38 38 H 1.09003 * 111.00252 * 82.37734 * 6 5 3 39 39 H 1.08997 * 110.36842 * 278.17113 * 7 6 5 40 40 H 1.09004 * 110.36839 * 155.84446 * 7 6 5 41 41 H 1.09003 * 109.58131 * 113.82391 * 14 13 11 42 42 H 1.08999 * 109.58566 * 353.40010 * 14 13 11 43 43 H 1.09000 * 109.49578 * 185.41809 * 15 14 13 44 44 H 1.08994 * 109.52461 * 65.33736 * 15 14 13 45 45 H 1.09003 * 109.46038 * 301.34535 * 16 15 14 46 46 H 1.09000 * 109.46199 * 181.38954 * 16 15 14 47 47 H 1.08998 * 109.47316 * 85.21405 * 20 19 17 48 48 H 1.09000 * 109.46986 * 325.20946 * 20 19 17 49 49 H 1.08998 * 109.47343 * 205.21490 * 20 19 17 50 50 H 0.96998 * 119.99697 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.61656 * 6.61694 * 29 13 11 52 52 H 1.08999 * 109.56198 * 246.19482 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7229 1.9500 -0.9110 5 6 1.4959 2.1886 1.2363 6 6 2.6959 3.0761 1.6601 7 6 3.8962 2.1534 1.3320 8 7 3.5073 1.4541 0.0939 9 6 4.3561 0.9189 -0.8058 10 8 3.9286 0.4561 -1.8429 11 6 5.8241 0.8956 -0.5263 12 8 6.2409 1.2466 0.5580 13 7 6.6850 0.4847 -1.4785 14 6 8.1148 0.3289 -1.1781 15 6 8.9237 1.1358 -2.1986 16 6 8.5279 0.7051 -3.6127 17 6 7.0418 0.9927 -3.8383 18 1 6.8513 2.0563 -3.6949 19 7 6.6711 0.6092 -5.2027 20 6 6.8347 -0.7783 -5.6436 21 6 6.1717 1.5475 -6.0660 22 1 6.4904 2.5766 -5.9885 23 6 5.2558 1.1763 -7.0408 24 7 4.7659 -0.0454 -7.0523 25 14 4.7185 2.4103 -8.3361 26 1 5.9024 2.8627 -9.1100 27 1 3.7424 1.7707 -9.2544 28 1 4.0841 3.5783 -7.6740 29 6 6.2110 0.1848 -2.8365 30 1 -0.3632 0.4368 -0.9303 31 1 -0.3633 -1.0240 0.0868 32 1 -0.3633 0.5872 0.8433 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.2348 1.4885 2.0299 36 1 0.6377 2.8039 0.9657 37 1 2.6571 3.3028 2.7254 38 1 2.7333 3.9910 1.0687 39 1 4.0557 1.4373 2.1381 40 1 4.7960 2.7459 1.1663 41 1 8.3894 -0.7239 -1.2443 42 1 8.3197 0.6997 -0.1738 43 1 9.9873 0.9522 -2.0467 44 1 8.7159 2.1981 -2.0702 45 1 8.7134 -0.3623 -3.7325 46 1 9.1198 1.2602 -4.3405 47 1 5.9560 -1.3564 -5.3577 48 1 7.7202 -1.2067 -5.1741 49 1 6.9497 -0.8040 -6.7272 50 1 4.1262 -0.3049 -7.7336 51 1 5.1603 0.4607 -2.9266 52 1 6.3298 -0.8798 -3.0377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027641369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:41 Heat of formation + Delta-G solvation = -47.124390 kcal Electronic energy + Delta-G solvation = -31556.580923 eV Core-core repulsion = 27556.605338 eV Total energy + Delta-G solvation = -3999.975585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19583 -40.51808 -39.00652 -38.78811 -36.68044 -34.54433 -33.93496 -33.08040 -32.58851 -30.45254 -28.83902 -28.01326 -27.58072 -25.60586 -25.31628 -24.14538 -23.32869 -22.46706 -21.49003 -20.70087 -20.02759 -18.83679 -18.34514 -18.02358 -17.64069 -17.06583 -16.75715 -16.38249 -15.84718 -15.69555 -15.55601 -15.45075 -15.10956 -14.86066 -14.78641 -14.45821 -14.35205 -14.17749 -13.91772 -13.80767 -13.54381 -13.44167 -13.04136 -12.94242 -12.81490 -12.71392 -12.53263 -12.48010 -12.24552 -12.22881 -12.15464 -12.11230 -12.06076 -11.68033 -11.60466 -11.59563 -11.48085 -11.39469 -10.63290 -10.20282 -9.93248 -9.72889 -8.63326 -7.86017 -5.40590 0.28480 1.18744 1.43861 1.46325 1.52852 2.03740 2.27200 2.49924 3.03635 3.30612 3.58449 3.62078 3.68930 3.84616 3.97657 3.99830 4.14050 4.14427 4.18953 4.23763 4.32934 4.36827 4.43742 4.54697 4.58303 4.68052 4.69830 4.78525 4.82969 4.88194 4.93175 4.97664 4.98446 5.01722 5.07478 5.09108 5.11562 5.17463 5.21981 5.25319 5.33041 5.34430 5.40044 5.46378 5.54892 5.62452 5.67180 6.00001 6.17425 6.37690 6.58219 6.89512 7.15558 7.84226 8.32636 9.17983 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004078 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.470366 B = 6863.865895 C = 8650.568812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.125 3.875 4 H 0.062 0.938 5 C -0.114 4.114 6 C -0.127 4.127 7 C 0.098 3.902 8 N -0.588 5.588 9 C 0.505 3.495 10 O -0.532 6.532 11 C 0.507 3.493 12 O -0.535 6.535 13 N -0.572 5.572 14 C 0.105 3.895 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.167 3.833 18 H 0.043 0.957 19 N -0.603 5.603 20 C 0.179 3.821 21 C -0.272 4.272 22 H 0.063 0.937 23 C -0.042 4.042 24 N -0.932 5.932 25 Si 0.967 3.033 26 H -0.273 1.273 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.068 3.932 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.059 0.941 47 H -0.009 1.009 48 H 0.029 0.971 49 H 0.025 0.975 50 H 0.249 0.751 51 H 0.115 0.885 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 3.436 21.240 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.152 4.152 6 C -0.165 4.165 7 C -0.023 4.023 8 N -0.321 5.321 9 C 0.289 3.711 10 O -0.411 6.411 11 C 0.290 3.710 12 O -0.414 6.414 13 N -0.304 5.304 14 C -0.015 4.015 15 C -0.155 4.155 16 C -0.164 4.164 17 C 0.059 3.941 18 H 0.062 0.938 19 N -0.325 5.325 20 C 0.034 3.966 21 C -0.403 4.403 22 H 0.080 0.920 23 C -0.238 4.238 24 N -0.577 5.577 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.218 1.218 28 H -0.205 1.205 29 C -0.056 4.056 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.010 0.990 48 H 0.048 0.952 49 H 0.044 0.956 50 H 0.059 0.941 51 H 0.132 0.868 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.159 3.255 21.077 21.436 hybrid contribution -0.404 0.062 -1.542 1.595 sum -2.563 3.318 19.535 19.980 Atomic orbital electron populations 1.21710 0.92731 1.02735 1.02754 1.21820 0.98186 0.95556 1.01440 1.22005 0.77681 0.97322 1.00754 0.92032 1.22767 0.98529 0.98679 0.95220 1.22888 0.92274 0.97279 1.04057 1.22698 0.99381 0.95402 0.84813 1.48582 1.07172 1.53753 1.22602 1.20168 0.87900 0.79727 0.83277 1.90600 1.78181 1.47502 1.24778 1.19930 0.87174 0.79140 0.84773 1.90654 1.78993 1.48016 1.23698 1.48220 1.08942 1.62608 1.10679 1.21984 0.77319 1.01541 1.00697 1.21828 1.01015 0.99703 0.92990 1.21948 0.95964 1.01526 0.96983 1.20792 0.93503 0.96173 0.83669 0.93829 1.43982 1.74465 1.06541 1.07541 1.20461 0.94784 0.84309 0.97034 1.19403 1.18719 0.91444 1.10689 0.91954 1.25987 0.96726 0.98345 1.02768 1.70185 1.32457 1.19289 1.35749 0.85357 0.77846 0.78509 0.78797 1.19861 1.21790 1.20464 1.23319 1.03502 0.99677 0.79071 0.93227 0.92026 0.89742 0.94587 0.91302 0.88281 0.87798 0.86524 0.90639 0.90100 0.90502 0.89658 0.88055 0.87362 0.92164 0.91852 0.92203 0.99028 0.95241 0.95564 0.94148 0.86821 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.74 71.98 0.70 -1.77 16 2 C -0.13 -3.12 5.36 30.60 0.16 -2.96 16 3 C 0.12 2.92 2.98 45.34 0.13 3.05 16 4 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.11 -1.51 5.25 31.78 0.17 -1.34 16 6 C -0.13 -1.68 7.08 31.99 0.23 -1.45 16 7 C 0.10 2.07 5.78 86.85 0.50 2.57 16 8 N -0.59 -16.62 3.07 -789.63 -2.42 -19.04 16 9 C 0.51 18.34 7.54 87.27 0.66 19.00 16 10 O -0.53 -23.42 12.40 -3.25 -0.04 -23.46 16 11 C 0.51 17.69 7.67 87.27 0.67 18.36 16 12 O -0.53 -17.80 13.51 -3.26 -0.04 -17.85 16 13 N -0.57 -19.78 2.97 -820.47 -2.44 -22.21 16 14 C 0.11 2.81 6.44 86.36 0.56 3.37 16 15 C -0.12 -2.99 6.08 30.67 0.19 -2.80 16 16 C -0.12 -4.19 5.10 30.62 0.16 -4.03 16 17 C 0.17 7.19 2.74 45.07 0.12 7.31 16 18 H 0.04 2.01 7.89 -2.39 -0.02 1.99 16 19 N -0.60 -31.44 2.79 -702.36 -1.96 -33.40 16 20 C 0.18 9.14 7.98 127.77 1.02 10.16 16 21 C -0.27 -15.58 9.49 84.03 0.80 -14.78 16 22 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 23 C -0.04 -2.43 5.14 84.86 0.44 -2.00 16 24 N -0.93 -57.10 10.97 21.65 0.24 -56.86 16 25 Si 0.97 46.39 29.56 68.60 2.03 48.42 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 29 C 0.07 2.85 5.41 86.36 0.47 3.32 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.00 6.79 -2.39 -0.02 0.99 16 33 H 0.04 1.15 7.14 -2.39 -0.02 1.13 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 0.99 7.52 -2.39 -0.02 0.97 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.84 6.72 -2.38 -0.02 1.83 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 2.51 7.00 -2.39 -0.02 2.49 16 43 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 2.08 6.75 -2.39 -0.02 2.06 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H -0.01 -0.48 7.76 -2.39 -0.02 -0.50 16 48 H 0.03 1.28 6.47 -2.39 -0.02 1.26 16 49 H 0.03 1.43 7.09 -2.39 -0.02 1.41 16 50 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 51 H 0.11 5.65 4.15 -60.59 -0.25 5.40 16 52 H 0.05 2.29 7.51 -2.39 -0.02 2.27 16 Total: -1.00 -72.78 393.03 2.98 -69.79 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.65 Total: 18.62 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: 6.97 Total: 35.99 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -6.58 Total: -131.52 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.08 Total: -41.31 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.78 2.98 -69.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027641369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.668 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds