Wall clock time and date at job start Tue Mar 31 2020 20:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46732 * 2 1 4 4 H 1.08999 * 109.47613 * 54.24888 * 3 2 1 5 5 C 1.50701 * 109.47244 * 174.24448 * 3 2 1 6 6 O 1.21282 * 119.99736 * 104.75550 * 5 3 2 7 7 N 1.34771 * 119.99996 * 284.75997 * 5 3 2 8 8 C 1.46925 * 120.63389 * 354.95820 * 7 5 3 9 9 C 1.53186 * 108.77922 * 233.61101 * 8 7 5 10 10 C 1.53040 * 109.31494 * 305.36991 * 9 8 7 11 11 C 1.53037 * 109.54101 * 61.36181 * 10 9 8 12 12 H 1.08993 * 109.49991 * 58.58975 * 11 10 9 13 13 N 1.46499 * 109.49867 * 178.68785 * 11 10 9 14 14 C 1.46502 * 120.00085 * 59.99687 * 13 11 10 15 15 C 1.36934 * 120.00145 * 240.00010 * 13 11 10 16 16 H 1.08001 * 119.99837 * 24.56253 * 15 13 11 17 17 C 1.38812 * 120.00173 * 204.56438 * 15 13 11 18 18 N 1.31612 * 120.00008 * 7.34501 * 17 15 13 19 19 Si 1.86801 * 119.99815 * 187.34417 * 17 15 13 20 20 H 1.48499 * 109.46995 * 90.00147 * 19 17 15 21 21 H 1.48499 * 109.47055 * 210.00062 * 19 17 15 22 22 H 1.48501 * 109.47126 * 330.00186 * 19 17 15 23 23 C 1.46935 * 120.62952 * 174.96447 * 7 5 3 24 24 N 1.46503 * 109.47246 * 294.24910 * 3 2 1 25 25 C 1.46758 * 124.35092 * 119.72710 * 24 3 2 26 26 C 1.54662 * 105.38224 * 162.85121 * 25 24 3 27 27 C 1.54633 * 101.68253 * 25.76777 * 26 25 24 28 28 C 1.34421 * 124.34613 * 300.02010 * 24 3 2 29 29 O 1.21281 * 124.94325 * 0.43672 * 28 24 3 30 30 H 1.09008 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47435 * 299.99692 * 1 2 3 32 32 H 1.08999 * 109.47374 * 60.00353 * 1 2 3 33 33 H 1.08996 * 109.47010 * 240.00180 * 2 1 3 34 34 H 1.08999 * 109.47374 * 119.99647 * 2 1 3 35 35 H 1.09004 * 109.58432 * 113.82383 * 8 7 5 36 36 H 1.08996 * 109.58288 * 353.40659 * 8 7 5 37 37 H 1.08992 * 109.49692 * 185.41149 * 9 8 7 38 38 H 1.09005 * 109.49703 * 65.31208 * 9 8 7 39 39 H 1.09006 * 109.45498 * 301.34494 * 10 9 8 40 40 H 1.08998 * 109.46122 * 181.38627 * 10 9 8 41 41 H 1.09002 * 109.46798 * 95.10119 * 14 13 11 42 42 H 1.08994 * 109.47293 * 215.09531 * 14 13 11 43 43 H 1.08997 * 109.47125 * 335.10187 * 14 13 11 44 44 H 0.97005 * 119.99887 * 179.97438 * 18 17 15 45 45 H 1.09007 * 109.58126 * 6.60093 * 23 7 5 46 46 H 1.08994 * 109.58469 * 246.17788 * 23 7 5 47 47 H 1.08998 * 110.24571 * 281.97857 * 25 24 3 48 48 H 1.09000 * 110.24690 * 43.98539 * 25 24 3 49 49 H 1.08994 * 111.19397 * 267.59376 * 26 25 24 50 50 H 1.08999 * 110.82169 * 143.77170 * 26 25 24 51 51 H 1.08999 * 110.48551 * 216.30892 * 27 26 25 52 52 H 1.09000 * 110.59824 * 93.72358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5949 1.9853 0.8340 5 6 3.5401 1.4450 0.1425 6 8 4.2402 1.6795 -0.8197 7 7 4.1038 1.1867 1.3391 8 6 3.2709 1.0097 2.5364 9 6 3.7653 1.9654 3.6267 10 6 5.2601 1.7359 3.8613 11 6 6.0317 2.0319 2.5733 12 1 5.8459 3.0611 2.2662 13 7 7.4654 1.8422 2.8077 14 6 7.9717 0.5341 3.2304 15 6 8.3322 2.8876 2.6316 16 1 7.9763 3.9039 2.7141 17 6 9.6683 2.6410 2.3470 18 7 10.0734 1.4127 2.1036 19 14 10.8911 4.0526 2.3095 20 1 11.4714 4.2409 3.6634 21 1 11.9764 3.7419 1.3447 22 1 10.1977 5.2972 1.8907 23 6 5.5631 1.0768 1.4711 24 7 1.6678 2.0920 -1.2594 25 6 0.8193 3.2855 -1.3565 26 6 1.0635 3.8481 -2.7763 27 6 1.4966 2.5787 -3.5458 28 6 2.0551 1.6680 -2.4747 29 8 2.7507 0.6964 -2.6824 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.3509 -0.0189 2.8884 36 1 2.2322 1.2359 2.2956 37 1 3.2188 1.7771 4.5507 38 1 3.6008 2.9953 3.3097 39 1 5.4266 0.6993 4.1543 40 1 5.6091 2.3977 4.6540 41 1 8.3069 -0.0253 2.3570 42 1 8.8077 0.6724 3.9161 43 1 7.1773 -0.0180 3.7326 44 1 11.0070 1.2404 1.9044 45 1 6.0367 1.3474 0.5273 46 1 5.8300 0.0538 1.7361 47 1 -0.2289 3.0144 -1.2303 48 1 1.1130 4.0192 -0.6057 49 1 1.8591 4.5930 -2.7735 50 1 0.1450 4.2620 -3.1923 51 1 2.2655 2.8210 -4.2794 52 1 0.6391 2.1141 -4.0327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027688256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:02 Heat of formation + Delta-G solvation = -61.534503 kcal Electronic energy + Delta-G solvation = -31595.009984 eV Core-core repulsion = 27594.409530 eV Total energy + Delta-G solvation = -4000.600454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00154 -40.67245 -38.82996 -37.38638 -36.82141 -35.85476 -33.90150 -32.83415 -31.90813 -30.69268 -28.47591 -28.28186 -28.08086 -26.05059 -25.21683 -23.29176 -23.01674 -22.70128 -21.71626 -20.34877 -19.55133 -18.82394 -18.36925 -17.89417 -17.41001 -17.08991 -16.57984 -16.21802 -15.87165 -15.60315 -15.39996 -15.24494 -15.17922 -14.88695 -14.56408 -14.46578 -14.30450 -14.05775 -13.93500 -13.83028 -13.61735 -13.45142 -13.29784 -12.94700 -12.89847 -12.82310 -12.51674 -12.40405 -12.24744 -12.20117 -12.12655 -12.10551 -11.94904 -11.83367 -11.73368 -11.64125 -11.40361 -10.91841 -10.69130 -10.57388 -9.70044 -9.62626 -8.78027 -7.87222 -5.38783 1.40304 1.42633 1.50184 1.51669 1.61823 1.94021 2.21228 2.46880 3.26673 3.35260 3.53240 3.60961 3.65422 3.83469 3.86988 3.98130 4.06404 4.09708 4.11876 4.22644 4.22968 4.34935 4.36691 4.48842 4.58109 4.67806 4.69383 4.70837 4.77088 4.81811 4.86497 4.89184 4.93045 5.04218 5.06479 5.08958 5.15391 5.17389 5.24544 5.25069 5.38204 5.40444 5.47454 5.55341 5.57822 5.63128 5.69615 6.22198 6.29116 6.45553 7.10725 7.15653 7.34078 7.82109 8.25312 9.15102 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003276 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.525506 B = 8545.037530 C = 9486.381160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C 0.152 3.848 4 H 0.153 0.847 5 C 0.484 3.516 6 O -0.578 6.578 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.120 4.120 10 C -0.123 4.123 11 C 0.170 3.830 12 H 0.042 0.958 13 N -0.611 5.611 14 C 0.182 3.818 15 C -0.267 4.267 16 H 0.067 0.933 17 C -0.053 4.053 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.271 1.271 23 C 0.117 3.883 24 N -0.611 5.611 25 C 0.098 3.902 26 C -0.121 4.121 27 C -0.152 4.152 28 C 0.503 3.497 29 O -0.574 6.574 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.058 0.942 41 H -0.005 1.005 42 H 0.018 0.982 43 H 0.035 0.965 44 H 0.248 0.752 45 H 0.032 0.968 46 H 0.053 0.947 47 H 0.110 0.890 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.128 0.872 51 H 0.087 0.913 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.480 2.919 0.000 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.170 4.170 3 C 0.045 3.955 4 H 0.170 0.830 5 C 0.272 3.728 6 O -0.457 6.457 7 N -0.339 5.339 8 C -0.022 4.022 9 C -0.159 4.159 10 C -0.162 4.162 11 C 0.062 3.938 12 H 0.060 0.940 13 N -0.333 5.333 14 C 0.037 3.963 15 C -0.398 4.398 16 H 0.085 0.915 17 C -0.247 4.247 18 N -0.586 5.586 19 Si 0.799 3.201 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.196 1.196 23 C -0.008 4.008 24 N -0.345 5.345 25 C -0.023 4.023 26 C -0.159 4.159 27 C -0.192 4.192 28 C 0.292 3.708 29 O -0.452 6.452 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.013 0.987 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.128 0.872 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.147 0.853 51 H 0.106 0.894 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.572 2.466 -0.574 29.680 hybrid contribution 2.259 0.239 -0.558 2.340 sum -27.313 2.704 -1.132 27.470 Atomic orbital electron populations 1.21666 0.91515 1.02826 1.03152 1.21847 0.99265 0.92981 1.02928 1.21040 0.88664 0.97282 0.88519 0.82963 1.21910 0.92609 0.76058 0.82218 1.90735 1.65379 1.49701 1.39843 1.48323 1.06560 1.70150 1.08845 1.22232 0.95206 1.01033 0.83707 1.21898 0.94391 0.99724 0.99874 1.21927 0.95747 1.01743 0.96790 1.20774 0.83447 0.95999 0.93573 0.93962 1.44157 1.02123 1.09003 1.78041 1.20479 0.94557 0.85431 0.95792 1.19552 0.90630 0.87856 1.41715 0.91486 1.25911 1.00129 0.98859 0.99849 1.70239 1.15302 1.20068 1.52971 0.85205 0.78498 0.78982 0.77400 1.20437 1.22223 1.19587 1.21906 0.80025 0.99572 0.99328 1.48204 1.50988 1.30759 1.04535 1.22526 0.95515 0.85287 0.98983 1.22666 1.04267 0.95439 0.93505 1.22363 1.03325 0.96615 0.96857 1.21658 0.78315 0.84790 0.86024 1.90684 1.38795 1.30906 1.84864 0.91850 0.89413 0.92873 0.94131 0.89187 0.89763 0.86168 0.86777 0.91634 0.91914 0.92343 0.98678 0.96293 0.94685 0.94274 0.94938 0.92854 0.87222 0.89366 0.91055 0.85348 0.89434 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.81 71.98 0.71 -0.83 16 2 C -0.13 -2.62 5.11 30.59 0.16 -2.47 16 3 C 0.15 3.32 1.81 44.24 0.08 3.40 16 4 H 0.15 1.88 6.52 -2.39 -0.02 1.87 16 5 C 0.48 16.88 6.83 87.66 0.60 17.47 16 6 O -0.58 -27.81 13.66 16.58 0.23 -27.59 16 7 N -0.60 -19.33 2.97 -818.90 -2.43 -21.76 16 8 C 0.10 1.87 5.37 86.36 0.46 2.34 16 9 C -0.12 -2.36 6.08 30.67 0.19 -2.17 16 10 C -0.12 -3.79 5.13 30.62 0.16 -3.63 16 11 C 0.17 7.24 2.74 45.07 0.12 7.36 16 12 H 0.04 1.94 7.88 -2.39 -0.02 1.92 16 13 N -0.61 -32.17 2.82 -702.36 -1.98 -34.15 16 14 C 0.18 9.41 7.89 127.77 1.01 10.42 16 15 C -0.27 -15.56 9.59 84.03 0.81 -14.75 16 16 H 0.07 3.81 7.82 -2.91 -0.02 3.78 16 17 C -0.05 -3.11 5.21 84.86 0.44 -2.66 16 18 N -0.94 -58.71 10.51 21.65 0.23 -58.48 16 19 Si 0.97 47.48 29.56 68.60 2.03 49.51 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 C 0.12 5.01 5.80 86.36 0.50 5.51 16 24 N -0.61 -13.44 2.21 -797.85 -1.77 -15.21 16 25 C 0.10 1.06 7.31 86.90 0.64 1.69 16 26 C -0.12 -1.28 7.19 31.72 0.23 -1.05 16 27 C -0.15 -2.74 6.86 30.59 0.21 -2.53 16 28 C 0.50 14.87 6.69 87.90 0.59 15.46 16 29 O -0.57 -24.14 14.85 16.58 0.25 -23.90 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.65 7.78 -2.39 -0.02 0.63 16 33 H 0.04 1.20 6.60 -2.39 -0.02 1.19 16 34 H 0.09 1.55 7.03 -2.39 -0.02 1.54 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.12 1.26 5.30 -2.39 -0.01 1.24 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.90 6.72 -2.38 -0.02 1.89 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H -0.01 -0.30 7.33 -2.39 -0.02 -0.32 16 42 H 0.02 1.03 7.29 -2.39 -0.02 1.01 16 43 H 0.03 1.51 6.46 -2.39 -0.02 1.49 16 44 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 45 H 0.03 1.74 7.00 -2.38 -0.02 1.72 16 46 H 0.05 2.31 7.51 -2.39 -0.02 2.29 16 47 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -93.18 394.54 4.33 -88.85 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.89 Total: 9.18 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 6.89 Total: 33.55 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -5.95 Total: -129.60 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: 0.47 Total: -51.48 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -93.18 4.33 -88.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027688256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.314 kcal (2) G-P(sol) polarization free energy of solvation -93.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds