Wall clock time and date at job start Tue Mar 31 2020 19:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47421 * 2 1 4 4 C 1.50700 * 109.47482 * 120.00332 * 2 1 3 5 5 O 1.21281 * 119.99844 * 255.86433 * 4 2 1 6 6 N 1.34776 * 120.00076 * 75.85905 * 4 2 1 7 7 C 1.47616 * 120.90495 * 181.72092 * 6 4 2 8 8 C 1.53882 * 107.50739 * 132.48997 * 7 6 4 9 9 H 1.09001 * 112.09785 * 182.66257 * 8 7 6 10 10 C 1.54542 * 108.36809 * 307.00706 * 8 7 6 11 11 C 1.54276 * 104.85009 * 89.29488 * 10 8 7 12 12 C 1.54963 * 104.81113 * 359.81363 * 11 10 8 13 13 H 1.08993 * 112.25728 * 146.60392 * 12 11 10 14 14 C 1.47165 * 120.70870 * 2.40304 * 6 4 2 15 15 N 1.48306 * 107.20622 * 59.11429 * 8 7 6 16 16 C 1.36934 * 128.08149 * 106.10210 * 15 8 7 17 17 H 1.08005 * 119.99680 * 12.84971 * 16 15 8 18 18 C 1.38811 * 120.00539 * 192.85920 * 16 15 8 19 19 N 1.31615 * 119.99630 * 9.78206 * 18 16 15 20 20 Si 1.86799 * 119.99969 * 189.78900 * 18 16 15 21 21 H 1.48505 * 109.46878 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46898 * 299.99313 * 20 18 16 23 23 H 1.48501 * 109.47543 * 59.99578 * 20 18 16 24 24 N 1.46903 * 109.46785 * 240.00406 * 2 1 3 25 25 C 1.47015 * 110.99941 * 185.07003 * 24 2 1 26 26 C 1.53099 * 109.25717 * 177.60517 * 25 24 2 27 27 O 1.43016 * 109.25960 * 56.84633 * 26 25 24 28 28 C 1.43010 * 113.73762 * 301.33212 * 27 26 25 29 29 C 1.47012 * 111.00370 * 61.43250 * 24 2 1 30 30 H 1.09001 * 109.47010 * 299.99686 * 1 2 3 31 31 H 1.08998 * 109.47649 * 59.99543 * 1 2 3 32 32 H 1.08998 * 109.47501 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47068 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46733 * 300.00479 * 3 2 1 35 35 H 1.09001 * 109.46773 * 60.00168 * 3 2 1 36 36 H 1.09001 * 109.38225 * 13.37088 * 7 6 4 37 37 H 1.08998 * 110.63515 * 252.32021 * 7 6 4 38 38 H 1.08997 * 110.36823 * 208.14057 * 10 8 7 39 39 H 1.09008 * 110.36303 * 330.45396 * 10 8 7 40 40 H 1.09000 * 110.36703 * 118.84489 * 11 10 8 41 41 H 1.09002 * 110.36819 * 241.05169 * 11 10 8 42 42 H 1.08997 * 109.75139 * 107.61220 * 14 6 4 43 43 H 1.09003 * 109.74965 * 346.87594 * 14 6 4 44 44 H 0.97005 * 119.99734 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.50231 * 297.53966 * 25 24 2 46 46 H 1.08996 * 109.50601 * 57.66948 * 25 24 2 47 47 H 1.09001 * 109.50791 * 296.90957 * 26 25 24 48 48 H 1.09006 * 109.54199 * 176.80467 * 26 25 24 49 49 H 1.09004 * 109.50515 * 298.73056 * 28 27 26 50 50 H 1.09003 * 109.53860 * 178.62645 * 28 27 26 51 51 H 1.09000 * 109.50711 * 302.32833 * 29 24 2 52 52 H 1.09005 * 109.50657 * 62.41281 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4764 -0.0715 2.1607 6 7 1.9882 -2.0558 1.2970 7 6 2.4399 -2.7703 2.5071 8 6 1.3601 -3.8075 2.8625 9 1 1.5977 -4.3496 3.7778 10 6 -0.0016 -3.0821 2.9508 11 6 -0.5726 -3.1374 1.5186 12 6 0.5016 -3.8890 0.6926 13 1 0.0634 -4.4954 -0.1000 14 6 1.5015 -2.8491 0.1570 15 7 1.2199 -4.7122 1.6957 16 6 1.6568 -6.0040 1.5714 17 1 1.9851 -6.5494 2.4439 18 6 1.6780 -6.6126 0.3239 19 7 1.4647 -5.8979 -0.7605 20 14 2.0089 -8.4457 0.1845 21 1 1.9774 -8.8471 -1.2449 22 1 3.3448 -8.7523 0.7559 23 1 0.9671 -9.1951 0.9317 24 7 2.0196 -0.6924 -1.1995 25 6 3.4841 -0.8180 -1.1745 26 6 3.9454 -1.5959 -2.4098 27 8 3.4790 -0.9312 -3.5871 28 6 2.0569 -0.7923 -3.6446 29 6 1.5764 -0.0063 -2.4218 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.5519 -2.0597 3.3261 37 1 3.3888 -3.2744 2.3239 38 1 -0.6639 -3.6014 3.6435 39 1 0.1394 -2.0473 3.2632 40 1 -1.5156 -3.6839 1.5071 41 1 -0.7142 -2.1298 1.1275 42 1 2.3385 -3.3561 -0.3231 43 1 1.0048 -2.1962 -0.5608 44 1 1.4791 -6.3233 -1.6322 45 1 3.9346 0.1745 -1.1801 46 1 3.7883 -1.3514 -0.2739 47 1 3.5381 -2.6064 -2.3768 48 1 5.0344 -1.6428 -2.4255 49 1 1.5945 -1.7794 -3.6475 50 1 1.7792 -0.2577 -4.5531 51 1 0.4881 0.0529 -2.4318 52 1 1.9958 0.9996 -2.4470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029516594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:28 Heat of formation + Delta-G solvation = -9.585639 kcal Electronic energy + Delta-G solvation = -33844.181588 eV Core-core repulsion = 29845.833806 eV Total energy + Delta-G solvation = -3998.347783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94198 -39.16142 -37.91254 -36.24270 -33.59968 -32.37226 -31.98434 -31.13540 -30.42154 -29.20825 -27.35198 -26.68415 -26.14959 -24.43381 -23.62050 -23.56110 -22.06603 -20.31813 -19.60915 -19.05770 -18.40409 -17.48571 -16.41436 -16.06393 -15.60609 -15.44357 -15.19717 -14.93025 -14.81741 -14.64814 -14.36552 -14.12025 -13.71441 -13.45504 -13.25545 -12.95180 -12.74850 -12.58202 -12.29810 -12.11660 -11.94926 -11.84434 -11.76332 -11.58182 -11.49133 -11.28882 -11.23253 -11.00834 -10.90638 -10.77141 -10.73803 -10.39303 -10.28367 -10.03730 -9.73839 -9.62169 -9.52894 -9.47432 -9.21947 -8.79197 -8.09044 -7.95029 -6.78791 -5.80699 -3.14309 3.01462 3.36711 3.42239 3.42761 3.62697 3.74250 3.96262 4.43768 4.67982 4.90031 4.98812 5.07875 5.10170 5.15981 5.25629 5.29274 5.35614 5.37312 5.52950 5.59455 5.65430 5.71580 5.72912 5.76017 5.78405 5.81139 5.84266 5.87850 5.96347 6.00842 6.04940 6.14647 6.15752 6.22005 6.32643 6.45095 6.47860 6.60842 6.68737 6.80928 6.85942 6.88749 6.92553 6.97086 7.19271 7.22548 7.41630 7.52736 7.71262 8.16775 8.21162 8.73194 9.09431 9.71131 10.48249 11.31053 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.005529 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.272487 B = 5063.124058 C = 6443.243651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.092 3.908 3 C -0.162 4.162 4 C 0.519 3.481 5 O -0.569 6.569 6 N -0.577 5.577 7 C 0.100 3.900 8 C 0.135 3.865 9 H 0.073 0.927 10 C -0.122 4.122 11 C -0.143 4.143 12 C 0.162 3.838 13 H 0.121 0.879 14 C 0.100 3.900 15 N -0.586 5.586 16 C -0.223 4.223 17 H 0.074 0.926 18 C -0.003 4.003 19 N -0.912 5.912 20 Si 0.909 3.091 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.287 1.287 24 N -0.507 5.507 25 C 0.014 3.986 26 C 0.065 3.935 27 O -0.388 6.388 28 C 0.064 3.936 29 C 0.010 3.990 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.253 0.747 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 11.933 -3.295 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.000 4.000 3 C -0.221 4.221 4 C 0.305 3.695 5 O -0.449 6.449 6 N -0.307 5.307 7 C -0.025 4.025 8 C 0.026 3.974 9 H 0.092 0.908 10 C -0.161 4.161 11 C -0.182 4.182 12 C 0.054 3.946 13 H 0.138 0.862 14 C -0.023 4.023 15 N -0.307 5.307 16 C -0.351 4.351 17 H 0.092 0.908 18 C -0.200 4.200 19 N -0.559 5.559 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.213 1.213 23 H -0.213 1.213 24 N -0.233 5.233 25 C -0.114 4.114 26 C -0.011 4.011 27 O -0.307 6.307 28 C -0.013 4.013 29 C -0.118 4.118 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.084 0.916 50 H 0.112 0.888 51 H 0.108 0.892 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.687 11.581 -3.134 12.115 hybrid contribution 0.463 -0.279 0.208 0.579 sum -1.225 11.302 -2.926 11.738 Atomic orbital electron populations 1.22126 0.91833 1.04295 1.02308 1.21242 0.97045 0.92618 0.89090 1.22203 1.01827 0.95625 1.02455 1.20115 0.78856 0.82632 0.87895 1.90628 1.48491 1.66230 1.39595 1.48344 1.60688 1.04608 1.17056 1.22440 0.98386 0.94679 0.86999 1.21929 0.92558 0.90313 0.92591 0.90847 1.22439 0.97546 0.98867 0.97274 1.22882 0.99446 0.99536 0.96310 1.22165 0.89470 0.89898 0.93033 0.86174 1.23020 0.99563 0.93268 0.86453 1.45192 1.64496 1.09745 1.11244 1.18952 1.37045 0.86015 0.93058 0.90813 1.24742 1.01955 0.98119 0.95195 1.69806 1.55292 1.33757 0.97010 0.86248 0.78000 0.85162 0.76597 1.21647 1.21278 1.21332 1.62883 1.10862 1.48618 1.00972 1.22856 0.87774 1.00155 1.00589 1.22668 0.99312 0.96158 0.83004 1.87937 1.21602 1.79372 1.41788 1.22646 0.81546 1.00368 0.96744 1.22932 1.01648 0.96615 0.90594 0.91701 0.91574 0.89693 0.92237 0.92045 0.91062 0.91185 0.92025 0.92923 0.92955 0.93091 0.92575 0.90925 0.87814 0.93629 0.93831 0.89355 0.91051 0.88798 0.91647 0.88850 0.89193 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.84 37.16 0.29 -1.55 16 2 C 0.09 1.30 0.29 -132.75 -0.04 1.26 16 3 C -0.16 -2.10 7.19 37.16 0.27 -1.84 16 4 C 0.52 9.15 5.10 -10.99 -0.06 9.10 16 5 O -0.57 -11.59 15.49 5.56 0.09 -11.50 16 6 N -0.58 -10.62 1.80 -171.17 -0.31 -10.93 16 7 C 0.10 1.93 5.98 -2.97 -0.02 1.91 16 8 C 0.13 2.69 4.27 -65.67 -0.28 2.41 16 9 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 10 C -0.12 -2.20 6.18 -25.25 -0.16 -2.36 16 11 C -0.14 -2.61 6.21 -25.03 -0.16 -2.77 16 12 C 0.16 3.44 3.17 -65.43 -0.21 3.23 16 13 H 0.12 2.94 6.20 -51.93 -0.32 2.61 16 14 C 0.10 1.92 3.99 -3.22 -0.01 1.90 16 15 N -0.59 -13.59 2.81 -152.35 -0.43 -14.02 16 16 C -0.22 -5.74 10.38 -15.06 -0.16 -5.89 16 17 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 18 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 19 N -0.91 -23.92 10.54 55.49 0.58 -23.34 16 20 Si 0.91 20.96 29.56 -169.99 -5.03 15.94 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 N -0.51 -6.87 1.61 -219.99 -0.35 -7.23 16 25 C 0.01 0.20 4.51 -3.71 -0.02 0.19 16 26 C 0.07 0.91 7.01 37.21 0.26 1.17 16 27 O -0.39 -5.41 10.83 -35.23 -0.38 -5.79 16 28 C 0.06 0.74 7.01 37.21 0.26 1.00 16 29 C 0.01 0.11 4.86 -3.71 -0.02 0.09 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.66 6.38 -51.93 -0.33 0.33 16 32 H 0.08 1.16 3.77 -51.93 -0.20 0.96 16 33 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 36 H 0.07 1.33 7.13 -51.93 -0.37 0.96 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.92 7.86 -51.92 -0.41 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.93 4.88 -51.93 -0.25 0.67 16 42 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 43 H 0.10 1.82 3.66 -51.93 -0.19 1.63 16 44 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.04 0.61 6.56 -51.93 -0.34 0.27 16 46 H 0.09 1.47 6.30 -51.93 -0.33 1.14 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 0.87 6.22 -51.93 -0.32 0.55 16 52 H 0.05 0.50 6.42 -51.93 -0.33 0.17 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -28.19 367.16 -8.67 -36.86 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.25 Total: 6.79 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.13 Total: 7.68 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.51 Total: -55.51 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.30 Total: -17.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.19 -8.67 -36.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029516594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.276 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds