Wall clock time and date at job start Tue Mar 31 2020 19:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 H 1.08999 * 109.99837 * 305.09472 * 3 2 1 5 5 C 1.54311 * 109.77591 * 66.24975 * 3 2 1 6 6 C 1.55153 * 102.86538 * 141.88405 * 5 3 2 7 7 C 1.54915 * 101.58120 * 324.30300 * 6 5 3 8 8 N 1.47022 * 109.88041 * 183.99816 * 3 2 1 9 9 C 1.34774 * 125.64825 * 61.67965 * 8 3 2 10 10 O 1.21354 * 119.99908 * 355.76744 * 9 8 3 11 11 C 1.49452 * 119.99977 * 175.76593 * 9 8 3 12 12 O 1.21340 * 120.00071 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99842 * 180.02562 * 11 9 8 14 14 C 1.46497 * 119.99869 * 180.02562 * 13 11 9 15 15 H 1.09000 * 109.36881 * 35.25597 * 14 13 11 16 16 C 1.50875 * 109.36540 * 154.99873 * 14 13 11 17 17 C 1.52574 * 109.36027 * 212.07599 * 16 14 13 18 18 C 1.47095 * 114.32643 * 274.98990 * 17 16 14 19 19 C 1.54861 * 110.32012 * 62.80118 * 18 17 16 20 20 N 1.44583 * 109.57904 * 288.74220 * 19 18 17 21 21 C 1.36935 * 118.64711 * 270.71698 * 20 19 18 22 22 H 1.08001 * 120.00187 * 143.80764 * 21 20 19 23 23 C 1.38816 * 119.99913 * 323.80779 * 21 20 19 24 24 N 1.31618 * 120.00026 * 155.76679 * 23 21 20 25 25 Si 1.86800 * 119.99909 * 335.76880 * 23 21 20 26 26 H 1.48501 * 109.46921 * 95.30833 * 25 23 21 27 27 H 1.48498 * 109.47059 * 215.30347 * 25 23 21 28 28 H 1.48498 * 109.47182 * 335.31036 * 25 23 21 29 29 C 1.47580 * 122.72890 * 90.76321 * 20 19 18 30 30 H 1.08992 * 109.47561 * 183.68942 * 1 2 3 31 31 H 1.09002 * 109.46728 * 303.69238 * 1 2 3 32 32 H 1.09000 * 109.47050 * 63.68396 * 1 2 3 33 33 H 1.08997 * 109.46567 * 239.99526 * 2 1 3 34 34 H 1.09001 * 109.46710 * 120.00173 * 2 1 3 35 35 H 1.09009 * 110.92459 * 23.47036 * 5 3 2 36 36 H 1.08997 * 110.74315 * 260.22097 * 5 3 2 37 37 H 1.09003 * 111.00725 * 206.23319 * 6 5 3 38 38 H 1.08999 * 111.04122 * 82.39463 * 6 5 3 39 39 H 1.08995 * 110.36697 * 278.17207 * 7 6 5 40 40 H 1.08996 * 110.45711 * 155.89223 * 7 6 5 41 41 H 0.97004 * 120.00003 * 359.97438 * 13 11 9 42 42 H 1.09001 * 109.49147 * 92.11335 * 16 14 13 43 43 H 1.08999 * 109.49196 * 332.04200 * 16 14 13 44 44 H 1.09004 * 108.51168 * 153.73591 * 17 16 14 45 45 H 1.09004 * 108.51192 * 36.24256 * 17 16 14 46 46 H 1.08997 * 109.32830 * 302.53977 * 18 17 16 47 47 H 1.08997 * 109.18543 * 182.97463 * 18 17 16 48 48 H 1.08995 * 109.45444 * 48.77232 * 19 18 17 49 49 H 1.09005 * 109.44576 * 168.72319 * 19 18 17 50 50 H 0.97005 * 120.00122 * 179.97438 * 24 23 21 51 51 H 1.08996 * 108.94792 * 197.15312 * 29 20 19 52 52 H 1.09005 * 108.96529 * 78.51189 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6091 1.9902 -0.8381 5 6 1.6627 2.1297 1.3291 6 6 2.9101 3.0004 1.6342 7 6 4.0552 2.0972 1.1116 8 7 3.5071 1.4541 -0.0964 9 6 4.2307 0.9633 -1.1220 10 8 3.6761 0.3893 -2.0361 11 6 5.7163 1.1259 -1.1335 12 8 6.2710 1.6995 -0.2194 13 7 6.4400 0.6356 -2.1595 14 6 7.8963 0.7945 -2.1705 15 1 8.2755 0.7233 -1.1511 16 6 8.5123 -0.2967 -3.0108 17 6 9.8823 -0.6583 -2.4450 18 6 10.9792 0.1999 -2.9186 19 6 10.7513 1.6631 -2.4654 20 7 9.6548 2.2367 -3.2132 21 6 9.9265 2.8642 -4.3995 22 1 9.2324 2.7859 -5.2232 23 6 11.0941 3.6011 -4.5434 24 7 11.6038 3.7994 -5.7406 25 14 11.9418 4.3112 -3.0379 26 1 13.0105 3.3834 -2.5879 27 1 12.5403 5.6263 -3.3810 28 1 10.9489 4.4884 -1.9481 29 6 8.2547 2.1748 -2.7505 30 1 -0.3634 -1.0254 0.0661 31 1 -0.3633 0.5701 0.8551 32 1 -0.3633 0.4556 -0.9212 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5045 1.3931 2.1170 36 1 0.7780 2.7538 1.2035 37 1 3.0104 3.1780 2.7050 38 1 2.8739 3.9418 1.0859 39 1 4.3154 1.3455 1.8567 40 1 4.9288 2.6978 0.8584 41 1 5.9966 0.1767 -2.8901 42 1 8.6236 0.0534 -4.0370 43 1 7.8684 -1.1760 -2.9940 44 1 10.1078 -1.6896 -2.7166 45 1 9.8362 -0.5926 -1.3579 46 1 11.0227 0.1619 -4.0070 47 1 11.9210 -0.1628 -2.5070 48 1 10.5138 1.6809 -1.4018 49 1 11.6561 2.2437 -2.6451 50 1 12.4195 4.3147 -5.8412 51 1 7.5944 2.3878 -3.5911 52 1 8.1019 2.9323 -1.9817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034479035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:42 Heat of formation + Delta-G solvation = -63.212328 kcal Electronic energy + Delta-G solvation = -30800.858774 eV Core-core repulsion = 26800.185564 eV Total energy + Delta-G solvation = -4000.673210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03669 -40.57768 -39.34478 -38.70421 -36.40865 -35.06045 -34.44179 -33.38625 -32.60852 -31.87523 -28.85114 -28.12537 -26.98997 -26.05816 -24.89234 -23.86981 -23.00538 -22.08399 -21.54619 -21.14594 -20.45554 -18.71839 -18.62272 -18.27799 -17.69002 -17.28791 -16.95216 -16.42100 -16.33017 -15.82492 -15.60403 -15.30530 -14.99155 -14.94324 -14.74274 -14.71820 -14.53476 -14.36756 -14.03957 -13.88118 -13.52082 -13.43617 -13.27798 -12.98507 -12.92981 -12.76734 -12.63460 -12.56903 -12.16812 -12.13091 -12.01587 -11.97317 -11.77824 -11.67231 -11.60252 -11.44779 -11.42361 -11.22359 -10.67928 -10.53176 -10.30105 -9.84019 -8.79407 -8.21803 -5.56353 0.29567 1.17874 1.27761 1.39599 1.50649 2.07405 2.38070 2.40501 3.02552 3.17549 3.43025 3.60127 3.66592 3.75611 3.85732 3.91665 4.13550 4.17123 4.21330 4.25273 4.28028 4.33716 4.44741 4.47082 4.54912 4.64095 4.72196 4.75418 4.82192 4.86928 4.91970 4.93805 4.98626 4.99922 5.08794 5.12490 5.15118 5.19188 5.23420 5.25508 5.29499 5.33595 5.34262 5.43324 5.47058 5.60940 5.94445 6.00509 6.13281 6.21127 6.62857 6.89247 7.00635 7.63889 7.98856 8.97853 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002732 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.643323 B =10246.398988 C =10786.788877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.126 3.874 4 H 0.072 0.928 5 C -0.117 4.117 6 C -0.129 4.129 7 C 0.086 3.914 8 N -0.586 5.586 9 C 0.519 3.481 10 O -0.542 6.542 11 C 0.506 3.494 12 O -0.534 6.534 13 N -0.682 5.682 14 C 0.145 3.855 15 H 0.086 0.914 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.135 4.135 19 C 0.133 3.867 20 N -0.605 5.605 21 C -0.259 4.259 22 H 0.043 0.957 23 C -0.015 4.015 24 N -0.943 5.943 25 Si 0.939 3.061 26 H -0.269 1.269 27 H -0.309 1.309 28 H -0.270 1.270 29 C 0.145 3.855 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.418 0.582 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.031 0.969 50 H 0.263 0.737 51 H 0.047 0.953 52 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.386 -8.880 18.246 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.024 3.976 4 H 0.090 0.910 5 C -0.154 4.154 6 C -0.167 4.167 7 C -0.036 4.036 8 N -0.319 5.319 9 C 0.302 3.698 10 O -0.420 6.420 11 C 0.287 3.713 12 O -0.411 6.411 13 N -0.335 5.335 14 C 0.040 3.960 15 H 0.104 0.896 16 C -0.150 4.150 17 C -0.136 4.136 18 C -0.175 4.175 19 C 0.008 3.992 20 N -0.329 5.329 21 C -0.388 4.388 22 H 0.060 0.940 23 C -0.212 4.212 24 N -0.587 5.587 25 Si 0.769 3.231 26 H -0.196 1.196 27 H -0.237 1.237 28 H -0.195 1.195 29 C 0.019 3.981 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.255 0.745 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -20.138 -8.739 18.294 28.576 hybrid contribution 0.747 0.636 -0.579 1.140 sum -19.390 -8.103 17.716 27.486 Atomic orbital electron populations 1.21691 0.93121 1.02596 1.02621 1.21858 0.97845 0.95337 1.02064 1.22041 0.77632 0.97613 1.00285 0.90999 1.22767 0.98838 0.99304 0.94509 1.22858 0.92897 0.97667 1.03281 1.22859 0.98615 0.96802 0.85329 1.48527 1.08277 1.56114 1.18966 1.19749 0.87553 0.80137 0.82374 1.90729 1.72521 1.42372 1.36427 1.20239 0.88201 0.79745 0.83139 1.90695 1.72568 1.41450 1.36380 1.45926 1.07705 1.56367 1.23507 1.21315 0.77894 0.95862 1.00924 0.89553 1.21251 0.97128 0.96988 0.99602 1.20221 0.93122 0.99687 1.00565 1.21268 0.98988 0.96280 1.00914 1.21285 0.89961 0.93549 0.94389 1.43810 1.01990 1.63931 1.23180 1.18683 1.05956 1.25122 0.89075 0.93971 1.25934 0.98911 0.98274 0.98105 1.69998 1.21720 1.42898 1.24125 0.85956 0.78623 0.76993 0.81576 1.19588 1.23744 1.19477 1.21527 0.85290 0.94596 0.96679 0.92042 0.90547 0.92915 0.93201 0.91443 0.88693 0.87768 0.87236 0.90688 0.90311 0.89661 0.74487 0.92265 0.89279 0.90419 0.91599 0.93871 0.90934 0.92621 0.95153 0.92771 0.93457 0.97066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.80 71.98 0.71 -0.89 16 2 C -0.13 -2.16 5.39 30.59 0.16 -2.00 16 3 C 0.13 2.10 2.94 45.34 0.13 2.24 16 4 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.12 -1.08 5.48 31.78 0.17 -0.91 16 6 C -0.13 -1.45 7.08 31.99 0.23 -1.22 16 7 C 0.09 1.58 6.21 86.86 0.54 2.12 16 8 N -0.59 -12.99 3.07 -789.64 -2.42 -15.41 16 9 C 0.52 14.39 7.73 87.27 0.67 15.06 16 10 O -0.54 -16.72 15.31 -3.26 -0.05 -16.77 16 11 C 0.51 15.06 7.81 87.27 0.68 15.75 16 12 O -0.53 -17.56 13.38 -3.21 -0.04 -17.61 16 13 N -0.68 -19.51 4.97 -445.64 -2.21 -21.73 16 14 C 0.15 4.63 2.27 44.62 0.10 4.73 16 15 H 0.09 2.81 6.75 -2.39 -0.02 2.79 16 16 C -0.11 -3.26 5.06 29.76 0.15 -3.11 16 17 C -0.10 -2.75 5.15 28.62 0.15 -2.61 16 18 C -0.13 -4.76 5.74 29.39 0.17 -4.59 16 19 C 0.13 5.63 4.51 87.37 0.39 6.03 16 20 N -0.61 -28.53 1.88 -698.42 -1.31 -29.84 16 21 C -0.26 -14.67 9.71 84.03 0.82 -13.86 16 22 H 0.04 2.65 8.05 -2.91 -0.02 2.62 16 23 C -0.02 -0.91 5.25 84.86 0.45 -0.46 16 24 N -0.94 -58.94 13.97 21.65 0.30 -58.64 16 25 Si 0.94 47.05 25.10 68.60 1.72 48.77 16 26 H -0.27 -12.64 6.65 99.48 0.66 -11.98 16 27 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 28 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 29 C 0.15 5.96 5.83 86.49 0.50 6.46 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.56 7.33 -2.39 -0.02 0.54 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.12 6.61 -2.39 -0.02 1.11 16 34 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 35 H 0.09 0.65 7.79 -2.38 -0.02 0.63 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 2.01 5.92 -2.39 -0.01 2.00 16 41 H 0.42 10.79 8.01 -92.71 -0.74 10.05 16 42 H 0.06 2.09 7.48 -2.39 -0.02 2.07 16 43 H 0.09 2.08 7.94 -2.39 -0.02 2.06 16 44 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.07 1.68 7.36 -2.39 -0.02 1.67 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 49 H 0.03 1.43 3.00 -2.38 -0.01 1.42 16 50 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 51 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 52 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -70.95 392.60 2.14 -68.82 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.12 Total: 19.66 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.03 Total: 22.75 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.65 Total: -125.62 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.09 Total: -34.38 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.72 Total: 48.77 kcal Total: -70.95 2.14 -68.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.603 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds